Microbiological composition of native and exotic clams from Tagus estuary: Effect of season and environmental parameters

The influence of seasonal and environmental parameters on the occurrence of bacteria was investigated in two clam species (Venerupis pullastra and Ruditapes philippinarum), water and sediment from the Tagus estuary. Total viable counts (TVC), Escherichia coli, Salmonella spp. and Vibrio spp. were evaluated during one-year. Overall, significant seasonal variations were found in both sampling sites, especially for E. coli and Vibrio spp. levels. In summer, significantly higher Vibrio spp. levels were found in R. philippinarum and sediment samples, but not in V. pullastra clams and water samples. In contrast, significantly higher TVC and E. coli levels were observed in winter months in water and sediment samples. Salmonella spp. was generally isolated when higher levels of E. coli were detected, particularly in R. philippinarum. This study is useful for authorities to develop monitoring strategies for coastal contamination and to estimate human health risks associated with the consumption of bivalves.     

Impact of the Phaeocystis globosa spring bloom on the intertidal benthic compartment in the eastern English Channel: a synthesis

From 1999 to 2005, studies carried out in the frame of regional and national French programs aimed to determine whether the Phaeocystisglobosa bloom affected the intertidal benthic communities of the French coast of the eastern English Channel in terms of composition and/or functioning. Study sites were chosen to cover most of the typical shore types encountered on this coast (a rocky shore, an exposed sandy beach and a small estuary). Both the presence of active Phaeocystis cells and their degradation product (foam) did have a significant impact on the studied shores. The primary production and growth rates of the kelp Saccharina latissima decreased during the bloom because of a shortage of light and nutrient for the macroalgae. On sandy sediments, the benthic metabolism (community respiration and community primary production), as well as the nitrification rate, were enhanced during foam deposits, in relation with the presence of bacteria and active pelagic cells within the decaying colonies. In estuarine sediments, the most impressive impact was the formation of a crust at the sediment surface due to drying foam. This led to anoxic conditions in the surface sediment and resulted in a high mortality among the benthic community. Some organisms also tended to migrate upward and were then directly accessible to the higher trophic level represented by birds. Phaeocystis then created a shortcut in the estuarine trophic network. Most of these modifications lasted shortly and all the systems considered came back to their regular properties and activities a few weeks after the end of the bloom, except for the most impacted estuarine area.     

Temporal changes in Sphingomonas and Mycobacterium populations in mangrove sediments contaminated with different concentrations of polycyclic aromatic hydrocarbons (PAHs)

The change in community diversity and structure of the indigenous, dominant, polycyclic aromatic hydrocarbon (PAH)-degrading bacterial genera, Sphingomonas and Mycobacterium, due to contamination in the environment is not very well known. A combination of PCR-DGGE with specific primers and a cultivation-dependent microbiological method was used to detect different populations of Sphingomonas and Mycobacterium in mangrove sediments. The structure of the entire bacterial community (including Sphingomonas) did not show a shift due to environmental contamination, whereas the diversity of Mycobacterium populations in mangrove sediments with higher PAH contamination increased from exposure between Day 0 and Day 30. The isolated Mycobacterium strains migrated to the same position as the major bands of the bacterial communities in Mycobacterium-specific DGGE. A dioxygenase gene system, nidA, which is commonly found in PAH-degrading Mycobacterium strains, was also detected in the more highly contaminated sediment slurries. The present study revealed that Mycobacterium species were the dominant PAH-degraders and played an important role in degrading PAHs in contaminated mangrove sediments.     

Sedimentary record of anthropogenic metal inputs in the Tagus prodelta (Portugal)

Favourable oceanographic and environmental conditions allow the formation of a fine-grained deposit (Tagus prodelta) located at the mouth of the Tagus River. This fine-grained deposit results from the sink and accumulation of terrestrial and marine-derived materials. Three short sediment cores collected in the Tagus prodelta were investigated through the variability in grain-size, major and trace elements, C_org, N_tot, δ¹³C and ²¹⁰Pb dating to characterise the historical development of trace metal contamination. Historical trends indicated significant anthropogenic enrichments for Hg, Pb, Zn, Cu, Sb and Sn since the 1930s. Hg presents the highest level of anthropogenic enrichment (ca. EF_Hg=20) in cores 3576 (PO287-26-1B) and 3579 (PO287-27-1B) collected closer to the shore. Despite these elements were derived from distinct industrial sources, all of them presented similar temporal trends, which points to the importance of estuarine mixing processes originated by the tidal regime and wind before transfer to the adjoining coastal areas. The cores were characterised by smoothness of down-core variations and river flood events occurred in the last decades were not registered. Furthermore, the improvement of effluents treatment together with the closing of some industrial point sources in the last two decades is not evidenced in recent sediment composition of the Tagus prodelta. Besides sediment reworking in the upper sediment layers, sediment mixing inside the estuary may explain minor abrupt alterations with the depth.     

Effects of copper and the sea lice treatment Slice on nutrient release from marine sediments

Copper-based antifoulant paints and the sea lice treatment Slice^® are widely used, and often detectable in the sediments beneath farms where they are administered. Ten-day, whole sediment mesocosm experiments were conducted to examine how increasing sediment concentrations of copper or Slice^® influenced final water column concentrations of ammonium-nitrogen (NH₄-N), nitrate + nitrite-nitrogen (NO_X-N) and phosphate-phosphorus (PO₄-P) in the presence of the non-target, benthic organisms Corophium volutator and Hediste diversicolor. Nominal sediment concentrations of copper and Slice^® had significant effects on the resulting concentrations of almost all nutrients examined. The overall trends in nutrient concentrations at the end of the 10-day incubations were highly similar between the trials with either copper or Slice^®, irrespective of the invertebrate species present. This suggests that nutrient exchange from the experimental sediments was primarily influenced by the direct effect of copper/Slice^® dose on the sediment microbial community, rather than the indirect effect of reduced bioturbation/irrigation due to increased macrofaunal mortality.     

Comparison of the role of two Spartina species in terms of phytostabilization and bioaccumulation of metals in the estuarine sediment

In the joint estuary of the Odiel and Tinto rivers (SW Spain), the invasive Spartina densiflora Brongn. and the native Spartina maritima (Curtis) Fernald are growing over sediments with extreme concentrations of heavy metals. The contents of As, Cu, Fe, Mn, Pb and Zn were determined in sediments, rhizosediments and different tissues of both species, from Odiel and Tinto marshes. S. densiflora showed a higher capability to retain metals around their roots and to control the uptake or transport of metals, mediated by a higher formation of plaques of Fe/Mn (hydro) oxides on the roots. At the Tinto marsh, there were no differences between the metal concentrations of the sediment and those of the rhizosediment, a fact that could be explained by the extremely high concentrations of metals which can pass over a threshold value, altering the properties of root cells and preventing roots from acting as a ‘barrier’ to the uptake or transport of metals.     

Shallow sublittoral meiofauna communities and sediment polycyclic aromatic hydrocarbons (PAHs) content on the Galician coast (NW Spain), six months after the Prestige oil spill

The aim of this work was to detect the impact of Prestige oil spill on meiobenthic community structure at higher levels of taxonomic aggregation. In addition, the relationship between sediment individual polycyclic aromatic hydrocarbon (PAH) concentration and meiofauna community structure was investigated. Six months after the Prestige oil spill, meiobenthos community and sediment PAHs content from seven shallow subtidal localities along the Galician coast were studied. Two sites presented differences in community structure, characterized by high densities of nematodes, gastrotrichs and turbellarians, and low densities of copepods. Chrysene and triphenylene were only found at these two disturbed sites and could be responsible for differences of meiobenthos community structure. However, differences in community structure of sites could be linked with sedimentary parameters, and discrimination between the effect of PAHs and sedimentary parameters was impossible due to the lack of baseline studies on meiobenthos and PAHs contents in this area.     

Methane levels in shallow subtropical lake sediments: Dependence on the trophic status of the lake and allochthonous input

The vertical sediment profiles (10 cm) of the margins of three shallow subtropical lakes (Rio Grande, Brazil) with different trophic states and surrounding areas were evaluated to identify the effects of the allochthonous input on the methane concentration in the sediment. Sediment cores were collected to quantify the organic matter content (OM) and total carbon (TC), total nitrogen (TN), total phosphorous (TP) and methane (CH₄) concentrations.The three lakes were distinguished according to the trophic status and classified as oligotrophic, dystrophic and eutrophic. The natural characteristics of the dystrophic and eutrophic lakes have been changed due to the allochthonous input of leaves and twigs (Eucalyptus sp.) and the excreta of birds, respectively. In the eutrophic lake, the allochthonous input contributed to high autochthonous production. The highest values of OM, TC, TN and TP were found in the superficial sediments of the dystrophic and eutrophic lakes. The accumulation of allochthonous organic matter in the littoral zone promoted changes in the vertical sediment profiles and contributed to increases in the CH₄ concentrations in the sediment.     

Chlorella-bearing ciliates (Stentor, Ophrydium) dominate in an oligotrophic, deep North Patagonian lake (Lake Caburgua, Chile)

The aim of this study was to present quantitative data on the population dynamics of Chlorella-bearing ciliates (Stentor, Ophrydium) compared to the total zooplankton community in a deep, oligotrophic North Patagonian lake. Mixotrophic and heterotrophic ciliates, rotifers and microcrustaceans, and important ecological parameters were sampled during a 1-year study. The results showed a low biodiversity with only a few dominant species in every zooplankton group. Three mixotrophic ciliates - Stentor araucanus, S. amethystinus and Ophrydium naumanni - were found. They peaked in summer and autumn with maximum values of 152-313 Ind L⁻¹ (Stentor) and 1880 Ind L⁻¹ (Ophrydium). Their contribution to the total ciliate abundance was 16±17% (annual average). Both Stentor species displayed a distinct vertical zonation during the stratification period with peak depth between 10 and 15 m (metalimnion). The contribution to total zooplankton biomass was 59.4% on an annual average (Stentor: 41%, O. naumanni: 18.4%) and 83% during the stratification period. Both abundance and biomass of mixotrophic ciliates correlated strongly with temperature and to a lesser degree with copepods, rotifers and small cladocerans. According to this study mixotrophic ciliates were by far the dominant zooplankton group in Lake Caburgua. We report for the first time the importance of O. naumanni in a deep Chilean North Patagonian lake.     

Inshore/offshore gradients of imposex and organotin contamination in Nassarius reticulatus (L.) along the Portuguese coast

Imposex and organotin (OT) tissue contamination of the netted whelk Nassarius reticulatus (L.) were assessed in the continental shelves around the main estuaries of the central coast of Portugal (Lisbon: Tagus estuary; Setúbal: Sado estuary) and the main coastal lagoon in the Southern of Portugal (Faro: Ria Formosa). Pollution levels were higher in areas of more intense boat traffic and shipyard activities and imposex showed a clear decreasing gradient from the estuaries to the offshore, in relation to a similar gradient of tissue contamination by tributyltin. Remarkably, imposex was extensively spread over the adjacent continental shelves of Tagus and Sado estuaries. The current work shows that TBT pollution is undoubtedly a matter of concern not only for the above estuaries where harbours are implanted but also for the adjacent continental shelves, regardless the massive dilution of contaminants that may occur in these deeper areas.     

Lake morphometry and wind exposure may shape the plankton community structure in acidic mining lakes

Acidic mining lakes (pH <3) are specific habitats exhibiting particular chemical and biological characteristics. The species richness is low and mixotrophy and omnivory are common features of the plankton food web in such lakes. The plankton community structure of mining lakes of different morphometry and mixing type but similar chemical characteristics (Lake 130, Germany and Lake Langau, Austria) was investigated. The focus was laid on the species composition, the trophic relationship between the phago-mixotrophic flagellate Ochromonas sp. and bacteria and the formation of a deep chlorophyll maximum along a vertical pH-gradient. The shallow wind-exposed Lake 130 exhibited a higher species richness than Lake Langau. This increase in species richness was made up mainly by mero-planktic species, suggesting a strong benthic/littoral - pelagic coupling. Based on the field data from both lakes, a nonlinear, negative relation between bacteria and Ochromonas biomass was found, suggesting that at an Ochromonas biomass below 50 μg C L⁻¹, the grazing pressure on bacteria is low and with increasing Ochromonas biomass bacteria decline. Furthermore, in Lake Langau, a prominent deep chlorophyll maximum was found with chlorophyll concentrations ca. 50 times higher than in the epilimnion which was build up by the euglenophyte Lepocinclis sp. We conclude that lake morphometry, and specific abiotic characteristics such as mixing behaviour influence the community structure in these mining lakes.     

Resistance of Lophelia pertusa to coverage by sediment and petroleum drill cuttings

In laboratory experiments, the cold-water coral Lophelia pertusa was exposed to settling particles. The effects of reef sediment, petroleum drill cuttings and a mix of both, on the development of anoxia at the coral surface were studied using O₂, pH and H₂S microsensors and by assessing coral polyp mortality. Due to the branching morphology of L. pertusa and the release of coral mucus, accumulation rates of settling material on coral branches were low. Microsensors detected H₂S production in only a few samples, and sulfate reduction rates of natural reef sediment slurries were low (<0.3 nmol S cm⁻³ d⁻¹). While the exposure to sediment clearly reduced the coral’s accessibility to oxygen, L. pertusa tolerated both partial low-oxygen and anoxic conditions without any visible detrimental short-term effect, such as tissue damage or death. However, complete burial of coral branches for >24 h in reef sediment resulted in suffocation.     

Reconstruction of historical nutrient levels in Korean and Japanese coastal areas based on dinoflagellate cyst assemblages

Dinoflagellate cysts acquired from sediment cores were analyzed in order to reconstruct historical nutrient levels in Gamak Bay, Korea and Ariake Bay, Japan. Dinoflagellate cyst assemblages in Gamak Bay were characterized by high proportions of heterotrophic cysts such as Brigantedinium spp., Protoperidinium americanum and Polykrikos cysts, which suggested that nutrients levels may have already been high before 1970s, and then increased further to the hypertrophic conditions of the 1990s. In contrast, dinoflagellate cyst assemblages in Ariake Bay were characterized by high relative abundances of Lingulodinium machaerophorum and Spiniferites spp., which suggested that nutrient levels in Ariake Bay had increased gradually since the mid 1960s, and may have been significantly enhanced by the mid 1980s. Dinoflagellate cyst assemblages reflecting environmental changes in the two bays are contrasting, perhaps due to different nutrient enrichment mechanisms. This suggests that the indicators of nutrient levels encoded in dinoflagellate cyst assemblages may exhibit site-specific information.     

Levels of persistent organic pollutants and residual pattern of DDTs in small cetaceans from the coast of São Paulo, Brazil

The State of São Paulo is the most developed area in Brazil and was impacted by persistent organic pollutants for several decades. This study investigated organochlorines in five species of small cetaceans (Pontoporia blainvillei, Stenella frontalis, Sotalia guianensis, Tursiops truncatus and Steno bredanensis) found dead along the coast of São Paulo between 1997 and 2003. DDTs (15.9 μg g⁻¹ lipid; mean for all pooled individuals) and PCBs (8.08 μg g⁻¹) exhibited the highest concentrations in the animals, reflecting large amounts formerly used in Brazil. Lower levels of mirex (0.149 μg g⁻¹), HCB (0.051 μg g⁻¹), CHLs (0.008 μg g⁻¹) and HCHs (0.007 μg g⁻¹) were detected in all species. Residual pattern of DDTs in dolphins suggests that o,p′-DDT is more recalcitrant than p,p′-DDT in the body of the animals and/or the environment. In contrast to p,p′-DDT, residues of o,p′-DDT seem to be preferentially converted into o,p′-DDD rather than o,p′-DDE.     

Diatom community dynamics in a tropical,monsoon-influenced environment: West coast of India

Diatom communities are influenced by environmental perturbations, such as the monsoon system that impact the niche opportunities of species. To discern the influence of the monsoon system on diatom community structure, we sampled during two consecutive post-monsoons (2001 and 2002) and the intervening pre-monsoon at Mumbai and Jawaharlal Nehru ports along the central west coast of India. Characteristic temporal shifts in diatom community structure were observed across the sampling periods; these were mainly driven by temperature, salinity and dissolved oxygen saturation. The nutrient-poor pre-monsoon period supported low abundance yet high species richness and diversity of diatoms. Coscinodiscus, Cyclotella, Thalassiosira, Triceratium, Pleurosigma, Skeletonema and Surirella were the most dominant genera. Both the post-monsoon periods, following dissimilar monsoon events, were dominated by Skeletonema costatum, but differed in some of the residual species. Thalassiosira and Thalassionema spp. dominated mostly during post-monsoon I whereas Triceratium and Pleurosigma spp. dominated during post-monsoon II. To understand the underlying ecological mechanisms involved in such dynamics, we focus on the dominant diatom species in post-monsoon periods, S. costatum, that contributes up to 60% to total diatom cell numbers. This research is relevant in light of the fluctuating monsoon regimes over the Asian continent, the confounding effects of anthropogenic eutrophication and the resulting cascading effects on trophic web dynamics.     

Critical erosion profiles in macro-tidal estuary sediments: Implications for the stability of intertidal mud and the slope of mud banks

Vertical profiles of the critical erosion threshold (τ_crit) in sediment have been measured at 11 stations along the axis of the Tamar Estuary and at a single station in a tributary of the Tamar at St. John's Ford. The τ_crit of surface sediment increased from 0.04 Pa in the upper, brackish estuary to 0.09 Pa in the lower estuary. In the upper estuary τ_crit only increased slightly with depth whereas in the marine estuary τ_crit increased rapidly from 0.09 Pa at the surface to 0.25 Pa at 15 cm below the sediment surface. The results showed that the relationship between τ_crit and bulk density (ρ_b) obtained previously for surface sediment was also applicable to sediments from depths of 10–15 cm and probably deeper. Profiles of ρ_b were measured to depths of 70 cm using a corer. In the lower (marine) estuary ρ_b increased with depth in the sediment from 1580 kg m⁻³ at the surface to 1720 kg m⁻³ at 70 cm. In the upper estuary ρ_b values were lower at 1170–1200 kg m⁻³ and profiles were almost homogeneous indicating that consolidation was not occurring. The mid-estuary was transitional between these two situations. These results are consistent with the seasonal accumulation and loss of ‘mobile’ sediment observed previously in the upper estuary with changes in river flow, and with the apparent stability of intertidal mud in the lower marine estuary deduced from historical bathymetric survey records. The slopes of the intertidal mud banks ranged from 1–2% in the lower estuary to 20–25% in mid-estuary but, instead of continuing to increase in steepness towards the head as the estuary became narrower, the measured slopes actually decreased. It is speculated that the lack of consolidation through continual mobilisation and settlement cycles combined with an increase in silt content in the upper estuary resulted in sediment that lacked the mechanical strength to maintain steep slopes.     

Coastal habitat degradation and green sea turtle diets in Southeastern Brazil

To show the influence of coastal habitat degradation on the availability of food for green turtles (Chelonia mydas), we assessed the dietary preferences and macroalgae community at a feeding area in a highly urbanized region. The area showed low species richness and was classified as degraded. We examined stomach contents of 15 dead stranded turtles (CCL = 44.0 cm (SD 6.7 cm)). The diet was composed primarily of green algae Ulva spp. (83.6%). In contrast, the macroalgae community was dominated by the green alga Caulerpa mexicana. We found a selection for red algae, seagrass and Ulva spp., and avoidance for C. mexicana and brown alga Dictyopteris delicatula. The low diversity of available food items, possibly a result of environmental degradation, likely contributed to the low dietary diversity. The nutritional implications of this restricted diet are unclear.     

Effects of lanthanum(III) and EDTA on the growth and competition of Microcystis aeruginosa and Scenedesmus quadricauda

Rare earth elements (REEs) are widely used to increase crop production in China. However, little attention has been paid to their impacts on aquatic ecology. Batch cultivation was used here to study the effects of lanthanum (La) and EDTA on the growth and competition of the cyanobacterium Microcystis aeruginosa and the green alga Scenedesmus quadricauda. When EDTA was present at a very low concentration (0.269 μmol L⁻¹), low lanthanum concentrations (?7.2 μmol L⁻¹) had little stimulative effect on the growth of M. aeruginosa and S. quadricauda, whereas a high lanthanum concentration (72 μmol L⁻¹) had significant inhibitory effect on both of them. The results of cultivation experiments suggested that the inhibitory effect on M. aeruginosa was higher than that on S. quadricauda and S. quadricauda could become dominant in mixed cultures. When lanthanum was not added to the culture medium, high EDTA concentrations (>13.4 μmol L⁻¹) had a great inhibitory effect on the growth of M. aeruginosa but little effect on the growth of S. quadricauda, which could become dominant in the mixed cultures.Lanthanum and EDTA had complex effects on the growth and competition of M. aeruginosa and S. quadricauda. EDTA did not change the stimulation of low lanthanum concentrations on both, but at intermediated concentrations (2.69-13.4 μmol L⁻¹) it could greatly alleviate lanthanum inhibition on M. aeruginosa; thus, M. aeruginosa would dominate S. quadricauda in these mixed cultures. Lanthanum at low concentration (7.2 μmol L⁻¹) could also alleviate the inhibition of high EDTA on M. aeruginosa, but did not alter the outcome of the competition.     

Riverine input and air–sea CO2 exchanges near the Changjiang (Yangtze River) Estuary: Status quo and implication on possible future changes in metabolic status

Due to anthropogenic activities, the nutrient loadings of the Changjiang (Yangtze River) are strickly on the rise. The high nutrient concentrations notwithstanding, river water was pCO₂ supersaturated in the inner estuary during summer 2003 but decreased quickly in the mid-estuary due to mixing with low pCO₂ waters from offshore. In addition, settling of particles in the estuary resulted in better light conditions so that phytoplankton bloomed, driving down pCO₂ to ∼200 μatm. In the outer estuary and outside of the bloom area, pCO₂ increased again to near or just below saturation. Literature data also reveal that the mainstream of the Changjiang is always supersaturated with respect to CO₂ probably because the decomposition of terrestrial organic matter overwhelms the consumption of CO₂ due to biological production.     

Temporal evolution of lead isotope ratios in sediments of the Central Portuguese Margin: A fingerprint of human activities

Stable Pb isotope ratios (²⁰⁶Pb/²⁰⁷Pb, ²⁰⁸Pb/²⁰⁶Pb), ²¹⁰Pb, Pb, Al, Ca, Fe, Mn and Si concentrations were measured in 7 sediment cores from the west coast of the Iberian Peninsula to assess the Pb contamination throughout the last 200 years. Independently of their locations, all cores are characterized by increasing Pb/Al rends not related to grain-size changes. Conversely, decreasing trends of ²⁰⁶Pb/²⁰⁷Pb were found towards the present. This tendency suggest a change in Pb sources reflecting an increased proportion derived from anthropogenic activities. The highest anthropogenic Pb inventories for sediments younger than 1950s were found in the two shallowest cores of Cascais and Lisboa submarine canyons, reflecting the proximity of the Tagus estuary. Lead isotope signatures also help demonstrate that sediments contaminated with Pb are not constrained to estuarine–coastal areas and upper parts of submarine canyons, but are also to transferred to a lesser extent to deeper parts of the Portuguese Margin.