S/S fractionation by sulfate-reducing microbial communities in estuarine sediments

Sulfur isotope fractionation during microbial sulfate reduction in brackish estuarine sediments was studied using an experimental flow-through reactor approach designed to preserve the in situ physical, geochemical and microbial structure of the sediment. Concurrent measurements of potential sulfate reduction rates and ³⁴S/³²S fractionations were carried out using intact sediment slices (2 cm thick, 4.2 cm diameter) from unvegetated, intertidal sites adjoining a salt marsh along the Scheldt estuary, The Netherlands. A total of 30 reactor experiments were performed with sediments collected in February, May and October 2006. The effects of incubation temperature (10, 20, 30 and 50 °C) and sediment depth (0-2, 4-6 and 8-10 cm) were investigated. Sulfate was supplied in non-limiting concentrations via the reactor inflow solutions; no external electron donor was supplied. Isotope fractionations (ε values) were calculated from the measured differences in sulfate δ³⁴S between in- and outflow solutions of the reactors, under quasi-steady state conditions. Potential sulfate reduction rates (SRR) varied over one order of magnitude (5-49 nmol cm⁻³ h⁻¹) and were highest in the 30 °C incubations. They decreased systematically with depth, and were highest in the sediments collected closest to the vegetated marsh. Isotope fractionations ranged from 9‰ to 34‰ and correlated inversely with SRR, as predicted by the standard fractionation model for enzymatic sulfate reduction of Rees (1973). The ε versus SRR relationship, however, varied between sampling times, with higher ε values measured in February, at comparable SRRs, than in May and October. The observed ε versus SRR relationships also deviated from the previously reported inverse trend for sediments collected in a marine lagoon in Denmark (Canfield, 2001b). Thus, isotope fractionation during sulfate reduction is not uniquely determined by SRR, but is site- and time-dependent. Factors that may affect the ε versus SRR relationship include the structure and size of the sulfate-reducing community, and the nature and accessibility of organic substrates. Whole-sediment data such as those presented here provide a link between isotopic fractionations measured with pure cultures of sulfate-reducing prokaryotes and sulfur isotopic signatures recorded in sedimentary deposits.     

Thermodynamic and kinetic control on anaerobic oxidation of methane in marine sediments

The free energy yield of microbial respiration reactions in anaerobic marine sediments must be sufficient to be conserved as biologically usable energy in the form of ATP. Anaerobic oxidation of methane (AOM) coupled to sulfate reduction (SRR) has a very low standard free energy yield of ΔG^° = −33 kJ mol⁻¹, but the in situ energy yield strongly depends on the concentrations of substrates and products in the pore water of the sediment. In this work ΔG for the AOM-SRR process was calculated from the pore water concentrations of methane, sulfate, sulfide, and dissolved inorganic carbon (DIC) in sediment cores from different sites of the European continental margin in order to determine the influence of thermodynamic regulation on the activity and distribution of microorganisms mediating AOM-SRR. In the zone of methane and sulfate coexistence, the methane-sulfate transition zone (SMTZ), the energy yield was rarely less than −20 kJ mol⁻¹ and was mostly rather constant throughout this zone. The kinetic drive was highest at the lower part of the SMTZ, matching the occurrence of maximum AOM rates. The results show that the location of maximum AOM rates is determined by a combination of thermodynamic and kinetic drive, whereas the rate activity mainly depends on kinetic regulation.     

Weak coupling between sulfate reduction and the anaerobic oxidation of methane in methane-rich seafloor sediments during ex situ incubation

We investigated coupling between sulfate reduction (SR) and anaerobic oxidation of methane (AOM) by quantifying pore water geochemical profiles, determining rates of microbial processes, and examining microbial community structure at two sites within Mississippi Canyon lease block 118 (MC118) in the Northern Gulf of Mexico. Sediments from the northwest seep contained high concentrations of methane while sediments from the southwest seep contained methane, gaseous n-alkanes and liquid hydrocarbons and had abundant surficial accumulations of gas hydrate. Volumetric (21.5 μmol cm⁻³ day⁻¹) and integrated (1429 mmol m⁻² day⁻¹) rates of SR at MC118 in ex situ incubations are the highest reported thus far for seafloor environments. AOM rates were small in comparison, with volumetric rates ranging from 0.1 to 12.6 nmol cm⁻³ day⁻¹. Diffusion cannot adequately supply the sulfate required to support these high SR rates so additional mechanisms, possibly biological sulfide oxidation and/or downward advection, play important roles in supplying sulfate at these sites. The microbial communities at MC118 included sulfate-reducing bacteria phylogenetically associated with Desulfobacterium anilini, which is capable of complex hydrocarbon degradation. Despite low AOM rates, the majority of archaea identified were phylogenetically related to previously described methane oxidizing archaea. To evaluate whether weak coupling between SR and AOM occurs in habitats lacking the complex hydrocarbon milieu present at MC118, we compiled available SR and AOM rates and found that the global median ratio of SR to AOM was 10.7:1 rather than the expected 1:1. The global median integrated AOM rate was used to refine global estimates for AOM rates at cold seeps; these new estimates are only 5% of the previous estimate.     

Concurrent low- and high-affinity sulfate reduction kinetics in marine sediment

Bacterial sulfate reduction in marine sediments generally occurs in the presence of high millimolar concentrations of sulfate. Published data indicate that low sulfate concentrations may limit sulfate reduction rates below 0.2-2 mM. Yet, high sulfate reduction rates occur in the 1-100 μM range in freshwater sediments and at the sulfate-methane transition in marine sediments. Through a combination of ³⁵S-tracer experiments, including initial velocity experiments and time course experiments, we searched for different sulfate affinities in the mixed community of sulfate reducers in a marine sediment. We supported the radiotracer experiments with a highly sensitive ion chromatographic technique for sulfate with a detection limit of 0.15 μM SO₄²⁻ in marine pore water. Our results showed that high and low affinities for sulfate co-occur and that the applied experimental approach may determine the observed apparent half saturation constant, K_m. Our experimental and model data both show that sulfate reduction in the studied marine sediment could be explained by two dominating affinities for sulfate: a low affinity with a mean half saturation constant, K_m, of 430 μM SO₄²⁻ and a high affinity with a mean K_m of 2.6 μM SO₄²⁻. The high-affinity sulfate reduction was thermodynamically un-constrained down to <1 μM SO₄²⁻, both in our experiments and under in situ conditions. The reduction of radio-labeled sulfate was partly reversible due to concurrent re-oxidation of sulfide by Fe(III) and possibly due to a reversibility of the enzymatic pathway of sulfate reduction. A literature survey of apparent K_m values for sediments and pure cultures is presented and discussed.     

Influence of the enzyme dissimilatory sulfite reductase on stable isotope fractionation during sulfate reduction

The stable isotopes of sulfate are often used as a tool to assess bacterial sulfate reduction on the macro scale. However, the mechanisms of stable isotope fractionation of sulfur and oxygen at the enzymatic level are not yet fully understood. In batch experiments with water enriched in ¹⁸O we investigated the effect of different nitrite concentrations on sulfur isotope fractionation by Desulfovibrio desulfuricans.With increasing nitrite concentrations, we found sulfur isotope enrichment factors ranging from −11.2 ± 1.8‰ to −22.5 ± 3.2‰. Furthermore, the δ¹⁸O values in the remaining sulfate increased from approximately 50-120‰ when ¹⁸O-enriched water was supplied. Since ¹⁸O-exchange with ambient water does not take place in sulfate, but rather in intermediates of the sulfate reduction pathway (e.g. ), we suggest that nitrite affects the steady-state concentration and the extent of reoxidation of the metabolic intermediate sulfite to sulfate during sulfate reduction. Given that nitrite is known to inhibit the production of the enzyme dissimilatory sulfite reductase, our results suggest that the activity of the dissimilatory sulfite reductase regulates the kinetic isotope fractionation of sulfur and oxygen during bacterial sulfate reduction. Our novel results also imply that isotope fractionation during bacterial sulfate reduction strongly depends on the cell internal enzymatic regulation rather than on the physico-chemical features of the individual enzymes.     

Dissolution kinetics as a function of the Gibbs free energy of reaction: An experimental study based on albite feldspar

Here we report on an experimental investigation of the relation between the dissolution rate of albite feldspar and the Gibbs free energy of reaction, ΔG_r. The experiments were carried out in a continuously stirred flow-through reactor at 150 °C and pH_(150 °C) 9.2. The dissolution rates R are based on steady-state Si and Al concentrations and sample mass loss. The overall relation between ΔG_r and R was determined over a free energy range of −150 < ΔG_r < −15.6 kJ mol⁻¹. The data define a continuous and highly non-linear, sigmoidal relation between R and ΔG_r that is characterized by three distinct free energy regions. The region furthest from equilibrium, delimited by −150 < ΔG_r < −70 kJ mol⁻¹, represents an extensive dissolution rate plateau with an average rate . In this free energy range the rates of dissolution are constant and independent of ΔG_r, as well as [Si] and [Al]. The free energy range delimited by −70 ? ΔG_r ? −25 kJ mol⁻¹, referred to as the ‘transition equilibrium’ region, is characterized by a sharp decrease in dissolution rates with increasing ΔG_r, indicating a very strong inverse dependence of the rates on free energy. Dissolution nearest equilibrium, defined by ΔG_r > −25 kJ mol⁻¹, represents the ‘near equilibrium’ region where the rates decrease as chemical equilibrium is approached, but with a much weaker dependence on ΔG_r. The lowest rate measured in this study, R = 6.2 × 10⁻¹¹ mol m⁻² s⁻¹ at ΔG_r = −16.3 kJ mol⁻¹, is more than two orders of magnitude slower than the plateau rate. The data have been fitted to a rate equation (adapted from Burch et al. [Burch, T. E., Nagy, K. L., Lasaga, A. C., 1993. Free energy dependence of albite dissolution kinetics at 80 °C and pH 8.8. Chem. Geol.105, 137-162]) that represents the sum of two parallel reactions

R=k₁[1-exp(-ng^m₁)]+k₂[1-exp(-g)]^m₂,     

Characterization of calcium isotopes in natural and synthetic barite

The mineral barite (BaSO₄) accommodates calcium in its crystal lattice, providing an archive of Ca-isotopes in the highly stable sulfate mineral. Holocene marine (pelagic) barite samples from the major ocean basins are isotopically indistinguishable from each other (δ^44/40Ca = −2.01 ± 0.15‰) but are different from hydrothermal and cold seep barite samples (δ^44/40Ca = −4.13 to −2.72‰). Laboratory precipitated (synthetic) barite samples are more depleted in the heavy Ca-isotopes than pelagic marine barite and span a range of Ca-isotope compositions, Δ^44/40Ca = −3.42 to −2.40‰. Temperature, saturation state, , and aCa²⁺/aBa²⁺ each influence the fractionation of Ca-isotopes in synthetic barite; however, the fractionation in marine barite samples is not strongly related to any measured environmental parameter. First-principles lattice dynamical modeling predicts that at equilibrium Ca-substituted barite will have much lower ⁴⁴Ca/⁴⁰Ca than calcite, by −9‰ at 0 °C and −8‰ at 25 °C. Based on this model, none of the measured barite samples appear to be in isotopic equilibrium with their parent solutions, although as predicted they do record lower δ^44/40Ca values than seawater and calcite. Kinetic fractionation processes therefore most likely control the extent of isotopic fractionation exhibited in barite. Potential fractionation mechanisms include factors influencing Ca²⁺ substitution for Ba²⁺ in barite (e.g. ionic strength and trace element concentration of the solution, competing complexation reactions, precipitation or growth rate, temperature, pressure, and saturation state) as well as nucleation and crystal growth rates. These factors should be considered when investigating controls on isotopic fractionation of Ca²⁺ and other elements in inorganic and biogenic minerals.     

Sulfur biogeochemistry and isotopic fractionation in shallow groundwater and sediments of Owens Dry Lake, California

Groundwater and sediment samples (∼ 1 m depth) at sites representative of different groundwater pathways were collected to determine the aqueous speciation of sulfur and the fractionation of sulfur isotopes in aqueous and solid phases. In addition, selected sediment samples at 5 depths (from oxic to anoxic layers) were collected to investigate the processes controlling sulfur biogeochemistry in sedimentary layers. Pyrite was the dominant sulfur-bearing phase in the capillary fringe and groundwater zones where anoxic conditions are found. Low concentrations of pyrite (< 5.9 g kg^− 1) coupled with high concentrations of dissolved sulfide (4.81 to 134.7 mg L^− 1) and low concentrations of dissolved Fe (generally < 1 mg L^− 1) and reducible solid-phase Fe indicate that availability of reactive Fe limits pyrite formation. The relative uniformity of down-core isotopic trends for sulfur-bearing mineral phases in the sedimentary layers suggests that sulfate reduction does not result in significant sulfate depletion in the sediment. Sulfate availability in the deeper sediments may be enhanced by convective vertical mixing between upper and lower sedimentary layers due to evaporative concentration. The large isotope fractionation between dissolved sulfate and sedimentary sulfides at Owens Lake provides evidence for initial fractionation from bacterial sulfate reduction and additional fractionation generated by sulfide oxidation followed by disproportionation of intermediate oxidation state sulfur compounds. The high salinity in the Owens Lake brines may be a factor controlling sulfate reduction and disproportionation in hypersaline conditions and results in relatively constant values for isotope fractionation between dissolved sulfate and total reduced sulfur.     

Calcite dissolution kinetics in the system CaCO3-H2O-CO2 at high undersaturation

Dissolution rates of limestone covered by a water film open to a CO₂-containing atmosphere are controlled by the chemical composition of the CaCO₃-H₂O-CO₂ solution at the water-mineral interface. This composition is determined by the Ca²⁺-concentration at this boundary, conversion of CO₂ into H⁺ and in the solution, and by diffusional mass transport of the dissolved species from and towards the water-limestone interface. A system of coupled diffusion-reaction equations for Ca²⁺, , and CO₂ is derived. The Ca²⁺ flux rates at the surface of the mineral are defined by the PWP-empirical rate law. These flux rates by the rules of stoichiometry must be equal to the flux rates of CO₂ across the air-water interface. In the solution, CO₂ is converted into H⁺ and . At low water-film thickness this reaction becomes rate limiting. The time dependent diffusion-reaction equations are solved for free drift dissolution by a finite-difference scheme, to obtain the dissolution rate of calcite as a function of the average calcium concentration in the water film. Dissolution rates are obtained for high undersaturation. The results reveal two regimes of linear dissolution kinetics, which can be described by a rate law F = α_i(m_ic_eq − c), where c is the calcium concentration in the water film, c_eq the equilibrium concentration with respect to calcite. For index i = 0, a fast rate law, which here is reported for the first time, is found with α₀ = 3 × 10⁻⁶ m s⁻¹ and m₀ = 0.3. For c > m₀c_eq, a slow rate law is valid with α₁ = 3 × 10⁻⁷ m  s⁻¹ and m₁ = 1, which confirms earlier work. The numbers given above are valid for film thickness of several tenths of a millimetre and at 20 °C. These rates are proven experimentally, using a flat inclined limestone plate covered by a laminar flowing water film injected at an input point with known flow rate Q and calcium concentration. From the concentration measured after flow distance x the dissolution rates are determined. These experiments have been performed at a carbon-dioxide pressure of 0.00035 atm and also of 0.01 atm. The results are in good agreement to the theoretical predictions.     

Internally consistent thermodynamic data for magnesium sulfate hydrates

Experimental studies on the stability of several Mg-sulfate hydrates including epsomite (MgSO₄·7H₂O), hexahydrite (MgSO₄·6H₂O), starkeyite (MgSO₄·4H₂O), and kieserite (MgSO₄·H₂O) as a function of temperature and relative humidity are in poor agreement with calculations based on thermodynamic properties of these substances taken from the literature. Therefore, we synthesized four different MgSO₄ hydrates and measured their enthalpies of formation by solution calorimetry at T = 298.15 K. The resulting enthalpies of formation from the elements are:

•

Δ_fH⁰₂₉₈ (epsomite) = −3387.7 ± 1.3 kJmol⁻¹

•

Δ_fH⁰₂₉₈ (hexahydrite) = −3088.1 ± 1.1 kJmol⁻¹

•

Δ_fH⁰₂₉₈ (sanderite, MgSO₄·2H₂O) = −1894.9 ± 1.3 kJmol⁻¹

•

Δ_fH⁰₂₉₈ (kieserite) = −1612.4 ± 1.3 kJmol⁻¹

Using mathematical programming (MAP) techniques, standard thermodynamic values consistent both with our calorimetric data and previously published humidity brackets could be derived:

•

Epsomite: Δ_fH⁰₂₉₈ = −3388.7 kJmol⁻¹, S⁰₂₉₈ = 371.3 Jmol⁻¹ K⁻¹, Δ_fG⁰₂₉₈ = −2871.0 kJmol⁻¹

•

Hexahydrite: Δ_fH⁰₂₉₈ = −3087.3 kJmol⁻¹, S⁰₂₉₈ = 348.5 Jmol⁻¹ K⁻¹, Δ_fG⁰₂₉₈ = −2632.3 kJmol⁻¹

•

Starkeyite: Δ_fH⁰₂₉₈ = −2496.1 kJmol⁻¹, S⁰₂₉₈ = 259.9 Jmol⁻¹ K⁻¹, Δ_fG⁰₂₉₈ = −2153.8 kJmol⁻¹

•

Kieserite: Δ_fH⁰₂₉₈ = −1611.5 kJmol⁻¹, S⁰₂₉₈ = 126.0 Jmol⁻¹ K⁻¹, Δ_fG⁰₂₉₈ = −1437.9 kJmol⁻¹

Additionally, heat capacity measurements and standard entropy determinations of several magnesium sulfate hydrate minerals from the literature are analyzed and judged against estimates obtained from a linear combination of the heat capacities of MgSO₄ and hexagonal ice. The results of the MAP analysis are compared to these estimates to conclude that heat capacity and entropy correlate well with the number of waters of hydration. However, even the good correlation is not good enough to capture the fine variations in these properties. Consequently, their experimental measurement is inevitable if reliable thermodynamic data are sought. Our MAP thermodynamic data show that epsomite, hexahydrite, and kieserite have stability fields in the T-%RH space. Starkeyite is metastable. Although no MAP data could have been derived for pentahydrite (MgSO₄·5H₂O) and sanderite, their transient existence suggest that both of them are metastable as well.     

Re-assessing the surface cycling of molybdenum and rhenium

We re-evaluate the cycling of molybdenum (Mo) and rhenium (Re) in the near-surface environment. World river average Mo and Re concentrations, initially based on a handful of rivers, are calculated using 38 rivers representing five continents, and 11 of 19 large-scale drainage regions. Our new river concentration estimates are 8.0 nmol kg⁻¹ (Mo), and 16.5 pmol kg⁻¹ (Re, natural + anthropogenic). The linear relationship of dissolved Re and in global rivers (R² = 0.76) indicates labile continental Re is predominantly hosted within sulfide minerals and reduced sediments; it also provides a means of correcting for the anthropogenic contribution of Re to world rivers using independent estimates of anthropogenic sulfate. Approximately 30% of Re in global rivers is anthropogenic, yielding a pre-anthropogenic world river average of 11.2 pmol Re kg⁻¹. The potential for anthropogenic contribution is also seen in the non-negligible Re concentrations in precipitation (0.03-5.9 pmol kg⁻¹), and the nmol kg⁻¹ level Re concentrations of mine waters. The linear Mo- relationship (R² = 0.69) indicates that the predominant source of Mo to rivers is the weathering of pyrite. An anthropogenic Mo correction was not done as anthropogenically-influenced samples do not display the unambiguous metal enrichment observed for Re. Metal concentrations in high temperature hydrothermal fluids from the Manus Basin indicate that calculated end-member fluids (i.e. Mg-free) yield negative Mo and Re concentrations, showing that Mo and Re can be removed more quickly than Mg during recharge. High temperature hydrothermal fluids are unimportant sinks relative to their river sources 0.4% (Mo), and 0.1% (pre-anthropogenic Re). We calculate new seawater response times of 4.4 × 10⁵ yr (τ_Mo) and 1.3 × 10⁵ yr (τ_Re, pre-anthropogenic).     

Arsenic, iron and sulfur co-diagenesis in lake sediments

Profiles of porewater pH and dissolved As, Fe, Mn, sulfate, total sulfide (ΣS^−II), total zero-valent sulfur (ΣS⁰), organic carbon and major ion concentrations, as well as those of solid As, acid-volatile sulfide (AVS), total S, Fe, Mn, Al, organic C, ²¹⁰Pb and ¹³⁷Cs were determined in the sediment of four lakes spanning a range of redox and geochemical conditions. An inverse modeling approach, based on a one-dimensional transport-reaction equation assuming steady-state, was applied to the porewater As profiles and used to constrain the net rates of reactions involving As (). The model defines depth intervals where As is either released to (positive ) or removed from (negative ) the porewaters.At two of the sites, whose bottom water were oxygenated at sampling time, a production zone ( = 12 × 10⁻¹⁸ mol cm⁻³ s⁻¹-71 × 10⁻¹⁸ mol cm⁻³ s⁻¹) is inferred a few cm below the sediment-water interface, coincident with sharp porewater As and Fe peaks that indicate an intense coupled recycling of As and Fe. This process is confirmed by solid As and Fe maxima just below the sediment surface. In these two lakes a zone of As consumption ( = −5 × 10⁻¹⁸ mol cm⁻³ s⁻¹ to −53 × 10⁻¹⁸ mol cm⁻³ s⁻¹), attributed to the slow adsorption of As to authigenic Fe oxyhydroxides, occurs just above the production zone. A second-order rate constant of 0.12 ± 0.03 cm³ mol⁻¹ s⁻¹ is estimated for this adsorption reaction.Such features in the porewater and solid profiles were absent from the two other lakes that develop a seasonally anoxic hypolimnion. Thermodynamic calculations indicate that the porewaters of the four lakes, when sulfidic (i.e., ΣS^−II ? 0.1 μM), were undersaturated with respect to all known solid As sulfides; the calculation also predicts the presence of As^V oxythioanions in the sulfidic waters, as suggested by a recent study. In the sulfidic waters, the removal of As ( = −1 × 10⁻¹⁸ mol cm⁻³ s⁻¹ to −23 × 10⁻¹⁸ mol cm⁻³ s⁻¹) consistently occurred when saturation, with respect to FeS_(s), was reached and when As^V oxythioanions were predicted to be significant components of total dissolved As. This finding has potential implications for As transport in other anoxic waters and should be tested in a wider variety of natural environments.     

Effect of pH and organic ligands on the kinetics of smectite dissolution at 25 °C

Forward dissolution rates of Na-Montmorillonite (Wyoming) SWy-2 smectite (Ca_0.06Na_0.56)[Al_3.08Fe(III)_0.38Mg_0.54] [Si_7.93 Al_0.07]O₂₀(OH)₄ were measured at 25 °C in a mixed-flow reactor equipped with interior dialysis compartment (6-8 kDa membrane) as a function of pH (1-12), dissolved carbonate (0.5-10 mM), phosphate (10⁻⁵ to 0.03 M), and nine organic ligands (acetate, oxalate, citrate, EDTA, alginate, glucuronic acid, 3,4-dihydroxybenzoic acid, gluconate, and glucosamine) in the concentration range from 10⁻⁵ to 0.03 M. In organic-free solutions, the Si-based rates decrease with increasing pH at 1 ? pH ? 8 with a slope close to −0.2. At 9 ? pH ? 12, the Si-based rates increase with a slope of ∼0.3. In contrast, non-stoichiometric Mg release weakly depends on pH at 1 ? pH ? 12 and decreases with increasing pH. The empirical expression describing Si-release rates [R, mol/cm²/s] obtained in the present study at 25 °C, I = 0.01 M is given by

     

Kinetics of microbial sulfate reduction in estuarine sediments

Kinetic parameters of microbial sulfate reduction in intertidal sediments from a freshwater, brackish and marine site of the Scheldt estuary (Belgium, the Netherlands) were determined. Sulfate reduction rates (SRR) were measured at 10, 21, and 30 °C, using both flow-through reactors containing intact sediment slices and conventional sediment slurries. At the three sites, and for all depth intervals studied (0-2, 2-4, 4-6 and 6-8 cm), the dependence of potential SRR on the sulfate concentration followed the Michaelis-Menten rate equation. Apparent sulfate half-saturation concentrations, K_m, measured in the flow-through reactor experiments were comparable at the freshwater and marine sites (0.1-0.3 mM), but somewhat higher at the brackish site (0.4-0.9 mM). Maximum potential SRR, R_max, in the 0-4 cm depth interval of the freshwater sediments were similar to those in the 0-6 cm interval of the marine sediments (10-46 nmol cm⁻³ h⁻¹ at 21 °C), despite much lower in situ sulfate availability and order-of-magnitude lower densities of sulfate-reducing bacteria (SRB), at the freshwater site. Values of R_max in the brackish sediments were lower (3.7-7.6 nmol cm⁻³ h⁻¹ at 21 °C), probably due to less labile organic matter, as inferred from higher C_org/N ratios. Inflow solutions supplemented with lactate enhanced potential SRR at all three sites. Slurry incubations systematically yielded higher R_max values than flow-through reactor experiments for the freshwater and brackish sediments, but similar values for the marine sediments. Transport limitation of potential SRR at the freshwater and brackish sites may be related to the lower sediment porosities and SRB densities compared to the marine site. Multiple rate controls, including sulfate availability, organic matter quality, temperature, and SRB abundance, modulate in situ sulfate-reducing activity along the estuarine salinity gradient.     

Microbial ammonia oxidation and enhanced nitrogen cycling in the Endeavour hydrothermal plume

Ammonium was injected from the subseafloor hydrothermal system at the Endeavour Segment, Juan de Fuca Ridge, into the deep-sea water column resulting in an -rich (?177 nM) neutrally buoyant hydrothermal plume. This was quickly removed by both autotrophic ammonia oxidation and assimilation. The former accounted for at least 93% of total net removal, with its maximum rate in the neutrally buoyant plume (?53 nM d⁻¹) up to 10-fold that in background deep water. Ammonia oxidation in this plume potentially added 26-130 mg into the deep-sea water column. This oxidation process was heavily influenced by the presence of organic-rich particles, with which ammonia-oxidizing bacteria (AOB) were often associated (40-68%). AOB contributed up to 10.8% of the total microbial communities within the plume, and might constitute a novel lineage of β-proteobacterial AOB based on 16S rRNA and amoA phylogenetic analyses. Meanwhile, assimilation rates were also substantially enhanced within the neutrally buoyant plume (?26.4 nM d⁻¹) and accounted for at least 47% of total net removal rates. The combined oxidation and assimilation rates always exceeded total net removal rates, suggesting active in situregeneration rates of at least an order of magnitude greater than the particulate nitrogen flux from the euphotic zone. Ammonia oxidation is responsible for turnover of 0.7-13 days and is probably the predominant in situ organic carbon production process (0.6-13 mg C m⁻² d⁻¹) at early stages of Endeavour neutrally buoyant plumes.     

An experimental study of magnesite dissolution rates at neutral to alkaline conditions and 150 and 200 °C as a function of pH, total dissolved carbonate concentration, and chemical affinity

Steady-state magnesite dissolution rates were measured in mixed-flow reactors at 150 and 200 °C and 4.6 < pH < 8.4, as a function of ionic strength (0.001 M ? I ? 1 M), total dissolved carbonate concentration (10⁻⁴ M < ΣCO₂ < 0.1 M), and distance from equilibrium. Rates were found to increase with increasing ionic strength, but decrease with increasing temperature from 150 to 200 °C, pH, and aqueous CO₃²⁻ activity. Measured rates were interpreted using the surface complexation model developed by Pokrovsky et al. (1999a) in conjunction with transition state theory (Eyring, 1935). Within this formalism, magnesite dissolution rates are found to be consistent with

     

Stable isotope fractionation during bacterial sulfate reduction is controlled by reoxidation of intermediates

Bacterial sulfate reduction is one of the most important respiration processes in anoxic habitats and is often assessed by analyzing the results of stable isotope fractionation. However, stable isotope fractionation is supposed to be influenced by the reduction rate and other parameters, such as temperature. We studied here the mechanistic basics of observed differences in stable isotope fractionation during bacterial sulfate reduction. Batch experiments with four sulfate-reducing strains (Desulfovibrio desulfuricans, Desulfobacca acetoxidans, Desulfonatronovibrio hydrogenovorans, and strain TRM1) were performed. These microorganisms metabolize different carbon sources (lactate, acetate, formate, and toluene) and showed broad variations in their sulfur isotope enrichment factors. We performed a series of experiments on isotope exchange of ¹⁸O between residual sulfate and ambient water. Batch experiments were conducted with ¹⁸O-enriched (δ¹⁸O_water = +700‰) and depleted water (δ¹⁸O_water = −40‰), respectively, and the stable ¹⁸O isotope shift in the residual sulfate was followed. For Desulfovibrio desulfuricans and Desulfonatronovibrio hydrogenovorans, which are both characterized by low sulfur isotope fractionation (ε_S > −13.2‰), δ¹⁸O values in the remaining sulfate increased by only 50‰ during growth when ¹⁸O-enriched water was used for the growth medium. In contrast, with Desulfobacca acetoxidans and strain TRM1 (ε_S < −22.7‰) the residual sulfate showed an increase of the sulfate δ¹⁸O close to the values of the enriched water of +700‰. In the experiments with δ¹⁸O-depleted water, the oxygen isotope values in the residual sulfate stayed fairly constant for strains Desulfovibrio desulfuricans, Desulfobacca acetoxidans and Desulfonatronovibrio hydrogenovorans. However, strain TRM1, which exhibits the lowest sulfur isotope fractionation factor (ε_S < −38.7‰) showed slightly decreasing δ¹⁸O values.Our results give strong evidence that the oxygen atoms of sulfate exchange with water during sulfate reduction. However, this neither takes place in the sulfate itself nor during formation of APS (adenosine-5′-phosphosulfate), but rather in intermediates of the sulfate reduction pathway. These may in turn be partially reoxidized to form sulfate. This reoxidation leads to an incorporation of oxygen from water into the “recycled” sulfate changing the overall ¹⁸O isotopic composition of the remaining sulfate fraction. Our study shows that such incorporation of ¹⁸O is correlated with the stable isotope enrichment factor for sulfur measured during sulfate reduction. The reoxidation of intermediates of the sulfate reduction pathway does also strongly influence the sulfur stable isotope enrichment factor. This aforesaid reoxidation is probably dependent on the metabolic conversion of the substrate and therefore also influences the stable isotope fractionation factor indirectly in a rate dependent manner. However, this effect is only indirect. The sulfur isotope enrichment factors for the kinetic reactions themselves are probably not rate dependent.     

Thermodynamic properties of H4SiO4 in the ideal gas state as evaluated from experimental data

Solid phases of silicon dioxide react with water vapor with the formation of hydroxides and oxyhydroxides of silica. Recent transpiration and mass-spectrometric studies convincingly demonstrate that H₄SiO₄ is the predominant form of silica in vapor phase at water pressure in excess of 10⁻² MPa. Available literature transpiration and solubility data for the reactions of solid SiO₂ phases and low-density water, extending from 424 to 1661 K, are employed for the determination of Δ_fG⁰, Δ_fH⁰ and S⁰ of H₄SiO₄ in the ideal gas state at 298.15 K, 0.1 MPa. In total, there are 102 data points from seven literature sources. The resulting values of the thermodynamic functions of H₄SiO₄(g) are: Δ_fG⁰ = −1238.51 ± 3.0 kJ mol⁻¹, Δ_fH⁰ = −1340.68 ± 3.5 kJ mol⁻¹ and S⁰ = 347.78 ± 6.2 J K⁻¹ mol⁻¹. These values agree quantitatively with one set of ab initio calculations. The relatively large uncertainties are mainly due to conflicting data for H₄SiO₄(g) from various sources, and new determinations of would be helpful. The thermodynamic properties of this species, H₄SiO₄(g), are necessary for realistic modeling of silica transport in a low-density water phase. Applications of this analysis may include the processes of silicates condensation in the primordial solar nebula, the precipitation of silica in steam-rich geothermal systems and the corrosion of SiO₂-containing alloys and ceramics in moist environments.     

Elemental and isotopic fractionation of Type B CAI-like liquids by evaporation

Vacuum evaporation experiments with Type B CAI-like starting compositions were carried out at temperatures of 1600, 1700, 1800, and 1900 °C to determine the evaporation kinetics and evaporation coefficients of silicon and magnesium as a function of temperature as well as the kinetic isotope fractionation factor for magnesium. The vacuum evaporation kinetics of silicon and magnesium are well characterized by a relation of the form J = J_oe^−E/RT with J_o = 4.17 × 10⁷ mol cm⁻² s⁻¹, E = 576 ± 36 kJ mol⁻¹ for magnesium, J_o = 3.81 × 10⁶ mol cm⁻² s⁻¹, E = 551 ± 63 kJ mol⁻¹ for silicon. These rates only apply to evaporation into vacuum whereas the actual Type B CAIs were almost certainly surrounded by a finite pressure of a hydrogen-dominated gas. A more general formulation for the evaporation kinetics of silicon and magnesium from a Type B CAI-like liquid that applies equally to vacuum and conditions of finite hydrogen pressure involves combining our determinations of the evaporation coefficients for these elements as a function of temperature (γ = γ₀e^−E/RT with γ₀ = 25.3, E = 92 ± 37 kJ mol⁻¹ for γ_Si; γ₀ = 143, E = 121 ± 53 kJ mol⁻¹ for γ_Mg) with a thermodynamic model for the saturation vapor pressures of Mg and SiO over the condensed phase. High-precision determinations of the magnesium isotopic composition of the evaporation residues from samples of different size and different evaporation temperature were made using a multicollector inductively coupled plasma mass spectrometer. The kinetic isotopic fractionation factors derived from this data set show that there is a distinct temperature effect, such that the isotopic fractionation for a given amount of magnesium evaporated is smaller at lower temperature. We did not find any significant change in the isotope fractionation factor related to sample size, which we interpret to mean that recondensation and finite chemical diffusion in the melt did not affect the isotopic fractionations. Extrapolating the magnesium kinetic isotope fractionations factors from the temperature range of our experiments to temperatures corresponding to partially molten Type B CAI compositions (1250-1400 °C) results in a value of α_Mg ≈ 0.991, which is significantly different from the commonly used value of .