Microbial nitrogen removal in a developing suburban estuary along the South Carolina coast

The conversion of undisturbed coastal regions to commercial and suburban developments may pose a threat to surface and groundwater quality by introducing nitrate-nitrogen (NO₃ ^?-N) from runoff of land-applied wastewater and fertilizers. Microbial denitrification is an important NO₃ ^?-N removal mechanism in coastal sediments. The objective of this study was to compare denitrification and nitrate conversion rates in coastal sediments from a golf course, suburban site, undeveloped marsh, and nonmarsh area near rapidly developing Hilton Head Island, South Carolina. Nitrous oxide was measured using gas chromatography and nitrate and ammonium concentrations were measured using a flow injection autoanalyzer in microcosms spiked, with 50 μg NO₃ ^?-N gdw^?1. The two marsh sites had the greatest ammonium production, which was correlated with fine sediment particle size and higher background sediment nitrate and surface water sulfate concentrations. The golf course swale had greatest denitrification rates, which were correlated with higher total carbon and organic nitrogen in sediments. Nitrate was consumed in golf course sediments to a greater extent than in the undeveloped marsh and upland freshwater sites, suggesting that the undeveloped sites and receiving estuaries may be more susceptible to nitrate contamination than the golf course swale and marsh under nonstorm conditions. Construction of swales and vegetated buffers using sediments with high organic carbon content as best management practices may aid in removing nitrate and other contaminants from runoff prior to its transport to the receiving marsh and estuary.     

Influences of microbial communities on groundwater component concentrations during managed artificial recharge

Managed aquifer recharge is one of the most popular methods for dealing with local water shortage issues, and the bacterial community could be a vital factor influencing groundwater quality during this process. In this study, analysis of variations in groundwater components during artificial recharge revealed three stages at a text site in China. During stage I, total iron and dissolved organic carbon levels are stable basically, dissolved oxygen and SO₄ ^2? levels have rising trends, NO₃ ^? curve varied not obviously. Variation curves show increases in dissolved oxygen, NO₃ ^?, SO₄ ^2? and stabilization in dissolved organic carbon and total iron at stage II. During stage III, dissolved oxygen and NO₃ ^? have rising trends, dissolved organic carbon, total iron, and SO₄ ^2? keep stable. At 25 and 70 days the Simpson and Shannon–Wiener indices show that microbial community richness and population diversity underwent a gradual dynamic change after recharge water arrived. Correlation analysis shows that the Simpson index was mainly affected by dissolved oxygen and NO₃ ^?. PCR-DGGE confirmed these findings. Overall, the results revealed that the main bacterial communities reduce total nitrogen, total phosphorous, and chemical oxygen demand, which corresponded to the calculated correlation index.     

Denitrification in anoxic sediments supported by biological nitrate transport

Biologically available nitrogen (fixed N) is removed from the oceans by metabolic conversion of inorganic N forms (nitrate and ammonium) to N₂ gas. Much of this removal occurs in marine sediments, where reaction rates are thought to be limited by diffusion. We measured the concentration and isotopic composition of major dissolved nitrogen species in anoxic sediments off the coast of California. At depths below the diffusive penetration of nitrate, we found evidence of a large nitrate pool transported into the sediments by motile microorganisms. A ∼20‰ enrichment in ¹⁵N and ¹⁸O of this biologically transported nitrate over bottom water values and elevated [N₂] and δ¹⁵N-N₂ at depth indicate that this nitrate is consumed by enzymatic redox reactions with the production of N₂ as the end product. Elevated N₂O concentrations in pore waters below the nitrate diffusion depth confirm that these reactions include the denitrification pathway. A data-constrained model shows that at least 31% of the total N₂ production in anoxic sediments is linked to nitrate bio-transport. Under suboxic/anoxic regimes, this nitrate bio-transport augments diffusive transport, thus increasing benthic fixed nitrogen losses and the reducing burial efficiency of sedimentary organic matter.     

Limited denitrification in glacial deposit aquifers having thick unsaturated zones (Long Island, USA)

The goal of this study was to demonstrate how the extent of denitrification, which is indirectly related to dissolved organ carbon and directly related to oxygen concentrations, can also be linked to unsaturated-zone thickness, a mappable aquifer property. Groundwater from public supply and monitoring wells in Northport on Long Island, New York state (USA), were analyzed for denitrification reaction progress using dissolved N₂/Ar concentrations by membrane inlet mass spectrometry. This technique allows for discernment of small amounts of excess N₂, attributable to denitrification. Results show an average 15 % of total nitrogen in the system was denitrified, significantly lower than model predictions of 35 % denitrification. The minimal denitrification is due to low dissolved organic carbon (29.3–41.1 μmol L^?1) and high dissolved oxygen concentrations (58–100 % oxygen saturation) in glacial sediments with minimal solid-phase electron donors to drive denitrification. A mechanism is proposed that combines two known processes for aquifer re-aeration in unconsolidated sands with thick (>10 m) unsaturated zones. First, advective flux provides 50 % freshening of pore space oxygen in the upper 2 m due to barometric pressure changes. Then, oxygen diffusion across the water-table boundary occurs due to high volumetric air content in the unsaturated-zone catchment area.     

Nutrient-Replete Benthic Microalgae as a Source of Dissolved Organic Carbon to Coastal Waters

Dissolved organic carbon (DOC) flux dynamics were examined in the context of other biogeochemical cycles in intertidal sediments inhabited by benthic microalgae. In August 2003, gross oxygenic photosynthetic (GOP) rates, oxygen penetration depths, and benthic flux rates were quantified at seven sites along the Duplin River, GA, USA. Sediments contained abundant benthic microalgal (BMA) biomass with a maximum chlorophyll a concentration of 201 mg chl a m^?2. Oxygen microelectrodes were used to determine GOP rates and O₂ penetration depth, which were tightly correlated with light intensity. Baseline and ¹⁵N-nitrate amended benthic flux core incubations were employed to quantify benthic fluxes and to investigate the impact of BMA on sediment water exchange under nitrogen (N)-limited and N-replete conditions. Unamended sediments exhibited tight coupling between GOP and respiration and served as a sink for water column dissolved inorganic nitrogen (DIN) and a source of silicate and dissolved inorganic carbon (DIC). The BMA response to the N addition indicated sequential nutrient limitation, with N limitation followed by silicate limitation. In diel (light–dark) incubations, biological assimilation accounted for 83% to 150% of the nitrate uptake, while denitrification (DNF) and dissimilatory nitrate reduction to ammonium (DNRA) accounted for <7%; in contrast, under dark conditions, DNF and DNRA accounted for >40% of the NO₃ ^? uptake. The N addition shifted the metabolic status of the sediments from a balance of autotrophy and heterotrophy to net autotrophy under diel conditions, and the sediments served as a sink for water column DIN, silicate, and DIC but became a source of DOC, suggesting that the increased BMA production was decoupled from sediment bacterial consumption of DOC.     

Spatial and Temporal Variability of Sediment Organic Matter Recycling in Two Temperate Eutrophicated Estuaries

This paper deals with the spatial and seasonal recycling of organic matter in sediments of two temperate small estuaries (Elorn and Aulne, France). The spatio-temporal distribution of oxygen, nutrient and metal concentrations as well as the organic carbon and nitrogen contents in surficial sediments were determined and diffusive oxygen fluxes were calculated. In order to assess the source of organic carbon (OC) in the two estuaries, the isotopic composition of carbon (δ ¹³C) was also measured. The temporal variation of organic matter recycling was studied during four seasons in order to understand the driving forces of sediment mineralization and storage in these temperate estuaries. Low spatial variability of vertical profiles of oxygen, nutrient, and metal concentrations and diffusive oxygen fluxes were monitored at the station scale (within meters of the exact location) and cross-section scale. We observed diffusive oxygen fluxes around 15 mmol m^?2 day^?1 in the Elorn estuary and 10 mmol m^?2 day^?1 in the Aulne estuary. The outer (marine) stations of the two estuaries displayed similar diffusive O₂ fluxes. Suboxic and anoxic mineralization was large in the sediments from the two estuaries as shown by the rapid removal of very high bottom water concentrations of NO _x ^? (>200 μM) and the large NH₄ ⁺ increase at depth at all stations. OC contents and C/N ratios were high in upstream sediments (11–15 % d.w. and 4–6, respectively) and decreased downstream to values around 2 % d.w. and C/N ≤ 10. δ ¹³C values show that the organic matter has different origins in the two watersheds as exemplified by lower δ ¹³C values in the Aulne watershed. A high increase of δ ¹³C and C/N values was visible in the two estuaries from upstream to downstream indicating a progressive mixing of terrestrial with marine organic matter. The Elorn estuary is influenced by human activities in its watershed (urban area, animal farming) which suggest the input of labile organic matter, whereas the Aulne estuary displays larger river primary production which can be either mineralized in the water column or transferred to the lower estuary, thus leaving a lower mineralization in Aulne than Elorn estuary. This study highlights that (1) meter scale heterogeneity of benthic biogeochemical properties can be low in small and linear macrotidal estuaries, (2) two estuaries that are geographically close can show different pattern of organic matter origin and recycling related to human activities on watersheds, (3) small estuaries can have an important role in recycling and retention of organic matter.     

Interstellar organic matter in meteorites

Hydrogen which is highly enriched in deuterium is present in organic matter in a variety of meteorites including non-carbonaceous chondrites. The concentrations of this hydrogen are quite large. For example Renazzo contains 140 μmoles/g of the 10,000‰ δD hydrogen. The $\text{D}\text{H}$ ratios of hydrogen in the organic matter vary from 8 × 10^?5 to 170 × 10^?5 (δD ranges from ? 500‰ to 10,000‰) as compared to 16 × 10^?5 for terrestrial hydrogen and 2 × 10^?5 for cosmic hydrogen. The majority of the unequilibrated primitive meteorites contain hydrogen whose $\text{D}\text{H}$ ratios are greater than 30 × 10^?5. If the $\text{D}\text{H}$ ratios in these compounds were due to enrichment relative to cosmic hydrogen by isotope exchange reactions, it would require that these reactions take place below 150 K. In addition the organic compounds having $\text{D}\text{H}$ ratios above 50 × 10^?5 would require temperatures of formation of < 120 K. These types of deuterium enrichments must take place by ion-molecule reactions in interstellar clouds where both ionization and low temperatures exist. Astronomically observed $\text{D}\text{H}$ ratios in organic compounds in interstellar clouds are typically 180 × 10^?5 and range between about 40 × 10^?5 and 5000 × 10^?5. The $\text{D}\text{H}$ values we have determined are the lower limits for the organic compounds derived from interstellar molecules because all processes subsequent to their formation, including terrestrial contamination, decrease their $\text{D}\text{H}$ ratios.In contrast, the $\text{D}\text{H}$ ratios of hydrogen associated with hydrated silicates are relatively uniform for the meteorites we have analyzed with an average value of 14 × 10^?5; very similar to the terrestrial value. These phyllosilicates values suggest equilibration of H₂O with H₂ in the solar nebula at temperatures of about 200 K and higher.The ${}^{13}\text{C}{}^{12}\text{C}$ ratios of organic matter, irrespective its $\text{D}\text{H}$ ratio, lie well within those observed for the earth. If organic matter originated in the interstellar medium, our data would indicate that the ${}^{13}\text{C}{}^{12}\text{C}$ ratio of interstellar carbon five billion years ago was similar to the present terrestrial value.Our findings suggest that other interstellar material, representing various inputs from various stars, in addition to the organic matter is preserved and is present in the meteorites which contain the high $\text{D}\text{H}$ ratios. We feel that some elements existing in trace quantities which possess isotopic anomalies in the meteorites may very well be such materials.     

Early organic diagenesis: The significance of progressive subsurface oxidation fronts in pelagic sediments

Porewater and solid phase geochemical data at two contrasting NE Atlantic stations are reported. Station 10552, on the Cape Verde abyssal plain, is a site of slow pelagic accumulation (ca. 0.4 cm kyr^?1). Molecular oxygen is present in the sediment column to at least 2 m, and probably much deeper, labile organic-carbon is almost totally consumed in the upper few centimetres of the sediment. By contrast, at station 10554 on the Madeira abyssal plain, the pelagic sequence has been interrupted by the occasional deposition of organic-rich turbidites. Porewater oxygen and nitrate profiles show that subsurface organic metabolism of the organic-carbon associated with the uppermost turbidite layer is a significant fraction of the overall metabolism in the sediment column. This metabolism occurs at a relatively thin reaction front which progresses deeper into the turbidite with time. This phenomenon exerts a controlling influence on the present nutrient profile and redox succession.In a less extreme form, substrate distributions of this latter type are not uncommon in Atlantic sediments. A model has been developed which is controlled by both oxygen and nitrate data. This model permits a vertical profile of metabolic activity to be derived, and also gives estimates of the reaction rate constants and solid phase mixing rates at these two contrasting stations. About 30% of the total activity at station 10554 is located within the turbidite at the deepening reaction front; this is a non-steady-state condition. In fact, it is found that the integrated metabolic activity at the two stations is not dissimilar (ca. $\text{1–2 × 10}{}^{\mathrm{?13}}\text{moles cm}{}^{\mathrm{?2}}\text{sec}{}^{\mathrm{?1}}$). The striking differences in redox profile are therefore primarily attributable to differences in the distribution of metabolic activity within the column.     

The influence of tidal action on porewater nitrate concentration and dynamics in intertidal sediments of the Sado estuary

The change in porewater nitrate (NO₂ ^? + NO₃ ^?) concentrations during exposure of intertidal sediment was studied at a fixed location in the Sado estuary, southwest Portugal, in November 1994. In order to follow nitrate concentration and dynamics from pre-ebb to post flood, during the day, high vertical resolution profiles (0.2 cm) were studied. As a complement, in February 1995, potential nitrification rates in the sediment were measured by laboratory incubations, with high vertical resolution (0.2 cm) up to 3 cm depth. Oxygen penetration was measured with polarographic mini-electrodes. The sediment’s texture as well as the organic matter composition in carbon and nitrogen were studied in deeper (30 cm) cores. In February 1993,²¹⁰Pb activity depth profiles were measured in a core sampled at the beginning of exposure, in order to evaluate the possibility of nonlocal particle exchange. C:N ratios and²¹⁰Pb activity profiles show evidence of nonlocal exchange of solid phase particles between the surface and deeper sediment, most likely due to macrofaunal activity. As a consequence, fresh organic matter is brought from the surface to 7–9 cm depth, causing enhancement of nutrient concentrations. Results of this study suggest nitrate dynamics in intertidal sediments of the Sado estuary are strongly influenced by tidal action. Periodic submersion and exposure allow for the diversification of pathways of oxygen supply to the sediment. Tidal stress at the sediment-water interface during the arrival (flooding) and departure (exposure) of the tidal front at the site has an important bearing on the effective depth of the nitrification zone. A denitrification rate of 2.16 μmol N dm^?5 h^?1 was measured directly from the nitrate inventory in the 1.5–6 cm depth layer. The schematic model of N cycling in these sediments suggests that 20% of the N pool is denitrified during exposure, and that this process is limited by O₂ availability for nitrification.     

Microelectrode Study of Oxygen Uptake and Organic Matter Decomposition in The Sediments of Xiamen Western Bay

Sediment cores were sampled from Xiamen Western Bay at five sites during the summer and winter of 2006 and Hg–Au microelectrodes were used to make on board measurements of the concentration gradients of dissolved oxygen, Mn²⁺, and Fe²⁺ within the sediments. The O₂ concentrations decreased sharply from about 200 μmol L⁻¹ in the bottom seawater to zero within a depth of a few millimeters into the sediment. Dissolved Mn²⁺ was detected below the oxic zones with peak concentrations up to 600 μmol L⁻¹, whereas dissolved Fe²⁺ had peak concentrations up to 1,000 μmol L⁻¹ in deeper layers. The elemental contents of organic carbon and nitrogen within the sediments were analyzed and their C/N ratios were in the range of 9.0 to 10.1, indicative of heavy terrestrial origin. Sediments from two sites near municipal wastewater discharge outlets had higher organic contents than those from the other sites. These high organic contents corresponded to shallow O₂ penetration depths, high dissolved Mn²⁺ and Fe²⁺ concentrations, and negative redox potentials within the sediments. This indicated that the high organic matter content had promoted microbial respiration within the sediments. Overall, the organic content did not show any appreciable decrease with increasing sediment depths, so a quadratic polynomial function was used to fit the curve of O₂ profiles within the sediments. Based on the O₂ profiles, O₂ fluxes across the seawater and sediment interface were estimated to be in the range 6.07 to 14.9 mmol m⁻² day⁻¹, and organic carbon consumption rates within the surface sediments were estimated to be in the range 3.3 to 20.8 mgC cm⁻³ a⁻¹. The case demonstrated that biogeochemistry within the sediments of the bay was very sensitive to human activities such as sewage discharge.     

Sedimentary pyrite formation: An update

Sedimentary pyrite formation during early diagenesis is a major process for controlling the oxygen level of the atmosphere and the sulfate concentration in seawater over geologic time. The amount of pyrite that may form in a sediment is limited by the rates of supply of decomposable organic matter, dissolved sulfate, and reactive detrital iron minerals. Organic matter appears to be the major control on pyrite formation in normal (non-euxinic) terrigenous marine sediments where dissolved sulfate and iron minerals are abundant. By contrast, pyrite formation in non-marine, freshwater sediments is severely limited by low concentrations of sulfate and this characteristic can be used to distinguish ancient organic-rich fresh water shales from marine shales. Under marine euxinic conditions sufficient H₂S is produced that the dominant control on pyrite formation is the availability of reactive iron minerals.Calculations, based on a sulfur isotope model, indicate that over Phanerozoic time the worldwide average organic carbon-to-pyrite sulfur ratio of sedimentary rocks has varied considerably. High $\text{C}\text{S}$ ratios during Permo-Carboniferous time can be explained by a shift of major organic deposition from the oceans to the land which resulted in the formation of vast coal swamps at that time. Low $\text{C}\text{S}$ ratios, compared to today, during the early Paleozoic can be explained in terms of a greater abundance of euxinic basins combined with deposition of a more reactive type of organic matter in the remaining oxygenated portions of the ocean. The latter could have been due to lower oceanic oxygen levels and/or a lack of transportation of refractory terrestrial organic matter to the marine environment due to the absence of vascular land plants at that time.     

Seasonal and Annual Fluxes of Nutrients and Organic Matter from Large Rivers to the Arctic Ocean and Surrounding Seas

River inputs of nutrients and organic matter impact the biogeochemistry of arctic estuaries and the Arctic Ocean as a whole, yet there is considerable uncertainty about the magnitude of fluvial fluxes at the pan-Arctic scale. Samples from the six largest arctic rivers, with a combined watershed area of 11.3?×?10⁶?km², have revealed strong seasonal variations in constituent concentrations and fluxes within rivers as well as large differences among the rivers. Specifically, we investigate fluxes of dissolved organic carbon, dissolved organic nitrogen, total dissolved phosphorus, dissolved inorganic nitrogen, nitrate, and silica. This is the first time that seasonal and annual constituent fluxes have been determined using consistent sampling and analytical methods at the pan-Arctic scale and consequently provide the best available estimates for constituent flux from land to the Arctic Ocean and surrounding seas. Given the large inputs of river water to the relatively small Arctic Ocean and the dramatic impacts that climate change is having in the Arctic, it is particularly urgent that we establish the contemporary river fluxes so that we will be able to detect future changes and evaluate the impact of the changes on the biogeochemistry of the receiving coastal and ocean systems.     

Stable isotope analysis of carbon cycling in the Perdido estuary, Florida

Stable carbon isotope (δ¹³C) analysis was used in the Peridido Estuary, Florida U.S. to determine the predominant carbon source that supports the bacterial assemblage. Stable carbon isotope values were measured in the suspended particulate matter (SPM), dissolved organic and inorganic matter, and bacteria. Stable nitrogen isotope (δ¹⁵N) ratios were measured in SPM and nitrate to assist in understanding carbon cycling through the estuary. Analyses were conducted on samples from riverine, coastal, and anthropogenic sources and compared with samples from the bay. Stable isotope ratio analysis was coupled with estimates of mixing of riverine and coastal waters into the bay. Preliminary observation of the °¹³C data indicates that terrestrial organic matter is the primary carbon source that is assimilated by bacteria in the ecosystem. Stable isotope data from carbon and nitrogen pools in combination with analysis of estuarine current velocities indicates that primary production is an important factor in the carbon cycle. This study demonstrates the importance of stable isotope analysis of multiple carbon and nitrogen pols to assess sources and cycling of organic matter.     

Stable isotope and organo-geochemical studies on phanerozoic sediments of the Williston Basin,North America

Carbon isotope studies have been carried out on marine Phanerozoic sediments of the Williston Basin, North America. Special attention was given to the recognition of systematic variations with age.δ ¹³C measurements on the carbonate fraction show a 3%₀ depletion from the Cambrian to the Mississippian and a 1–2%₀ enrichment to the Jurassic. Both the sign of these displacements and a good correlation with the organic carbon content suggest that real variations in the rate of photosynthesis may have been the driving force for these changes with age.Because of the large isotopic heterogeneities in the organic biomass, systematic fluctuations with age in the δ ¹³C-values of the total organic carbon record are hard to prove. Nevertheless, a significant 3%₀ depletion was observed from the Devonian to the end of the Carboniferous. This depletion seems to occur on a worldwide scale. It is therefore proposed that a rise in the rate of photosynthesis as a consequence of the colonization of the continents by higher plants is the global cause of this displacement in the isotope record of the total organic carbon.The bitumen fraction does not show any systematic isotope variations with age.Comparison of coexisting δ ¹³C_org?δ ¹³C_bit pairs demonstrates that during the Ordovician-Mississippian time period no significant (> 1%₀) differences in the isotope values of these two organic carbon sources can be observed. In contrast the bitumen fraction is depleted in ¹³C as compared to the total organic carbon in the Cambrian as well as in the Pennsylvanian-Cretaceous time interval. Several parameters, i.e. the depth of burial of these sediments, the $\text{1}\text{2}$(pristane/n-C₁₇ + phytane/n-C₁₈) ratio and the n-alkane distribution pattern support the theory that the rank of the organic matter may be responsible for the observed isotopic pattern.     

Sediment-water oxygen and nutrient exchanges along the longitudinal axis of Chesapeake Bay: Seasonal patterns,controlling factors and ecological significance

Sediment-water oxygen and nutrient (NH₄ ⁺, NO₃ ^?+NO₂ ^?, DON, PO₄ ^3?, and DSi) fluxes were measured in three distinct regions of Chesapeake Bay at monthly intervals during 1 yr and for portions of several additional years. Examination of these data revealed strong spatial and temporal patterns. Most fluxes were greatest in the central bay (station MB), moderate in the high salinity lower bay (station SB) and reduced in the oligohaline upper bay (station NB). Sediment oxygen consumption (SOC) rates generally increased with increasing temperature until bottom water concentrations of dissolved oxygen (DO) fell below 2.5 mg l^?1, apparently limiting SOC rates. Fluxes of NH₄ ⁺ were elevated at temperatures >15°C and, when coupled with low bottom water DO concentrations (<5 mg l^?1), very large releases (>500 μmol N m^?2 h^?1) were observed. Nitrate + nitrite (NO₃ ^?+NO₂ ^?) exchanges were directed into sediments in areas where bottom water NO₃ ^?+NO₂ ^? concentrations were high (>18 μM N); sediment efflux of NO₃ ^?+NO₂ ^? occurred only in areas where bottom water NO₃ ^?+NO₂ ^? concentrations were relatively low (<11 μM N) and bottom waters well oxygenated. Phosphate fluxes were small except in areas of hypoxic and anoxic bottom waters; in those cases releases were high (50–150 μmol P m^?2 h^?1) but of short duration (2 mo). Dissolved silicate (DSi) fluxes were directed out of the sediments at all stations and appeared to be proportional to primary production in overlying waters. Dissolved organic nitrogen (DON) was released from the sediments at stations NB and SB and taken up by the sediments at station MB in summer months; DON fluxes were either small or noninterpretable during cooler months of the year. It appears that the amount and quality of organic matter reaching the sediments is of primary importance in determining the spatial variability and interannual differences in sediment nutrient fluxes along the axis of the bay. Surficial sediment chlorophyll-a, used as an indicator of labile sediment organic matter, was highly correlated with NH₄ ^?, PO₄ ^3?, and DSi fluxes but only after a temporal lag of about 1 mo was added between deposition events and sediment nutrient releases. Sediment O:N flux ratios indicated that substantial sediment nitrification-denitrification probably occurred at all sites during winter-spring but not summer-fall; N:P flux ratios were high in spring but much less than expected during summer, particularly at hypoxic and anoxic sites. Finally, a comparison of seasonal N and P demand by phytoplankton with sediment nutrient releases indicated that the sediments provide a substantial fraction of nutrients required by phytoplankton in summer, but not winter, especially in the mid bay region.     

Spatial and Temporal Variability of Benthic Respiration in a Scottish Sea Loch Impacted by Fish Farming: A Combination of In Situ Techniques

The effects of fish farm activities on sediment biogeochemistry were investigated in Loch Creran (Western Scotland) from March to October 2006. Sediment oxygen uptake rates (SOU) were estimated along an organic matter gradient generated from an Atlantic salmon farm using a combination of in situ techniques: microelectrodes, planar optode and benthic chamber incubations. Sulphide (H₂S) and pH distributions in sediment porewater were also measured using in situ microelectrodes, and dissolved inorganic carbon (DIC) fluxes were measured in situ using benthic chambers. Relationships between benthic fluxes, vertical distribution of oxidants and reduced compounds in the sediment were examined as well as bacterial abundance and biomass. Seasonal variations in SOU were relatively low and mainly driven by seasonal temperature variations. The effect of the fish farm on sediment oxygen uptake rate was clearly identified by higher total and diffusive oxygen uptake rates (TOU and DOU, respectively) on impacted stations (TOU: 70 ± 25 mmol O₂ m^?2 day^?1; DOU: 70 ± 32 mmol O₂ m^?2 day^?1 recalculated at the summer temperature), compared with the reference station (TOU: 28.3 ± 5.5 mmol O₂ m^?2 day^?1; DOU: 21.5 ± 4.5 mmol O₂ m^?2 day^?1). At the impacted stations, planar optode images displayed high centimetre scale heterogeneity in oxygen distribution underlining the control of oxygen dynamics by small-scale processes. The organic carbon enrichment led to enhanced sulphate reduction as demonstrated by large vertical H₂S concentration gradients in the porewater (from 0 to 1,000 μM in the top 3 cm) at the most impacted site. The impact on ecosystem functions such as bioirrigation was evidenced by a decreasing TOU/DOU ratio, from 1.7 in the non-impacted sediments to 1 in the impacted zone. This trend was related to a shift in the macrofaunal assemblage and an increase in sediment bacterial population. The turnover time of the organic load of the sediment was estimated to be over 6 years.     

Precambrian sedimentary carbonates: carbon and oxygen isotope geochemistry and implications for the terrestrial oxygen budget

Carbon isotope values of 260 Precambrian limestones and dolomites (most of them being substantially unaltered) have yielded an overall mean of $\text{δ}{}^{13}\text{C}\text{= +0.4 ± 2.7‰}$ vs. PDB; the corresponding oxygen values average at $\text{δ}{}^{13}\text{O = +20.0 ± 4.2‰}$ vs. SMOW. Like the overall mean, the δ ¹³C values furnished by individual carbonate occurrences are, as a rule, fairly “modern” and almost constant as from the very beginning of the sedimentary record. A remarkable exception are the “heavy” dolomites of the Middle Precambrian Lomagundi Group, Rhodesia, with $\text{δ}{}^{13}\text{C}\text{= +9.4 ± 2.0‰}$ vs. PDB. As a result of our measurements, the sporadic occurrence in the geological past of anomalously heavy carbonates seems to be established.The approximate constancy around zero per mill of the δ ¹³C values of marine carbonates through geologic time would imply a corresponding constancy of the relative proportion of organic carbon in the total sedimentary carbon reservoir since about 3.3 · 10⁹ y ago (with C_org/C_total ? 0.2). Utilizing this ratio and current models for the accumulation of the sedimentary mass as a function of time, we get a reasonable approximation for the absolute quantity of organic carbon buried in sediments and, accordingly, of photosynthetic oxygen released. Within the constraints of our model (based on a terrestrial degassing constant λ = 1.16 · 10^?9 y^?1) close to 80% of the amount of oxygen contained in the present oxygen budget should have been released prior to 3 · 10⁹ y ago. Since geological evidence indicates an O₂-deficient environment during the Early and most parts of the Middle Precambrian, there is reason to believe that the distribution of this oxygen between the “bound” and the “molecular” reservoir was different from that of today (with effective O₂-consuming reactions bringing about an instantaneous transfer to the crust of any molecular oxygen released). Accordingly, the amount of C_org in the ancient sedimentary reservoir as derived from our isotope data is just a measure of the gross amount of photosynthetic oxygen produced, withholding any information as to how this oxygen was partitioned between the principal geochemical reservoirs. As a whole, the carbon isotope data accrued provide evidence of an extremely early origin of life on Earth since the impact of organic carbon on the geochemical carbon cycle can be traced back to almost 3.5 · 10⁹y.     

The contrasting geochemical behaviours of iodine and bromine in recent sediments from the Namibian shelf

The vertical distribution of iodine, bromine and organic carbon has been examined in sediment cores from a range of environments on the Namibian shelf. The relationship between Br and C org. is linear, and that between I and C org. is variable, for all surface sediments; I/C org. ratios show a decrease of about one order of magnitude between the outer shelf oxidising sediments ($\text{250 × 10}{}^{\mathrm{?4}}$) and the organic-rich inner shelf sediments ($\text{20 × 10}{}^{\mathrm{?4}}$). The contrasting behaviour of the halogens in surface sediments is explained by differences in the amount of halogen absorbed by living organisms within the euphotic zone and on seston on the seabed. It is suggested that sorption by seston occurs only in oxidising sediment where free O₂ is available. Hence, iodine is sorbed by seston in the outer shelf environment, but is not sorbed by the reducing sediments of the inner shelf. Here the iodine in the sediment represents only that taken up by plankton. On the outer shelf, 50–80% of the total iodine in the organic matter is sorbed by seston. The principal site of Br uptake is not known.The distribution of C org. in subsurface sediments broadly reflects that found at the surface, although there is a slight decrease with depth in the outer shelf cores due to dilution by terrigenous materials. In the inner shelf cores, there is no change in the relationship of iodine and bromine to organic carbon at depth. Those from the mid shelf, and especially the outer shelf, on the other hand, show decreases in both I/C org. and Br/C org. ratios, reaching values at about 70 cm depth that are similar to those in surface reduced sediments from the inner shelf. Over this depth interval I/C org. ratios decrease by a factor of five while Br/C org. ratios show a two fold decrease. These changes in the ratios at depth imply that diagenesis within the reducing cores is negligible compared with that of oxidised sediments. The implications of diagenesis with regard to halogen recycling in sediments are briefly discussed.     

The Dynamics of Benthic Respiration at a Mid-Shelf Station Off Oregon

Mid-shelf sediments off the Oregon coast are characterized as fine sands that trap and remineralize phytodetritus leading to the consumption of significant quantities of dissolved oxygen. Sediment oxygen consumption (SOC) can be delayed from seasonal organic matter inputs because of a transient buildup of reduced constituents during periods of quiescent physical processes. Between 2009 and 2013, benthic oxygen exchange rates were measured using the noninvasive eddy covariance (EC) method five separate times at a single 80-m station. Ancillary measurements included in situ microprofiles of oxygen at the sediment–water interface, and concentration profiles of pore water nutrients and trace metals, and solid-phase organic C and sulfide minerals from cores. Sediment cores were also incubated to derive anaerobic respiration rates. The EC measurements were made during spring, summer, and fall conditions, and they produced average benthic oxygen flux estimates that varied between ?2 and ?15 mmol m^?2 d^?1. The EC oxygen fluxes were most highly correlated with bottom-sensed, significant wave heights (H _s). The relationship with H _s was used with an annual record of deepwater swell heights to predict an integrated oxygen consumption rate for the mid-shelf of 1.5 mol m^?2 for the upwelling season (May–September) and 6.8 mol m^?2 y^?1. The annual prediction requires that SOC rates are enhanced in the winter because of sand filtering and pore water advection under large waves, and it counters budgets that assume a dominance of organic matter export from the shelf. Refined budgets will require winter flux measurements and observations from cross-shelf transects over multiple years.     

Sediment-water oxygen and nutrient fluxes in a river-dominated estuary

Sediment oxygen uptake and net sediment-water fluxes of dissolved inorganic and organic nitrogen and phosphorus were measured at two sites in Fourleague Bay, Louisiana, from August 1981, through May 1982. This estuary is an extension of Atchafalaya Bay which receives high discharge and nutrient loading from the Atchafalaya River. Sediment O₂ uptake averaged 49 mg m^?2 h^?1. On the average, ammonium (NH₄ ⁺) was released from the sediments (mean flux =+129 μmol m^?2 h^?1), and NO₃ ^? was taken up (mean flux =?19 μmol m^?2h^?1). However, very different NO₃ ^? fluxes were observed at the two sites, with sediment uptake at the upper, river-influenced, high NO₃ ^? site (mean flux =?112 μmol m^?2 h^?1) and release at the lower, marine-influenced low NO₃ ^? site (mean flux =+79 μmol m^?2 h^?1). PO₄ ^3? fluxes were low and often negative (mean flux =?8 μmol m^?2 h^?1), while dissolved organic phosphorus fluxes were high and positive (mean flux =+124 μmol m^?2 h^?1). Dissolved organic nitrogen fluxes varied greatly, ranging from a mean of +305 μmol m^?2 h^?1 at the lower bay, to ?710 μmol m^?2 h^?1 at the upper bay. Total dissolved nitrogen and phosphorus fluxes indicated the sediments were a nitrogen (mean flux =+543 μmol m^?2 h^?1) and phosphorus source (mean flux =+30 μmol m^?2 h^?1) at the lower bay, and a nitrogen sink (mean flux =?553 μmol m^?2 h^?1) and phosphorus source (mean flux =+17 μmol m^?2 h^?1) in the upper bay. Mean annual O∶N ration of the positive inorganic sediment fluxes were 27∶1 at the upper bay and 18∶1 at the lower bay. Based on these data we hypothesize that nitrification and denitrification are important sediment processes in the upper bay. We further hypothesize that Atchafalaya River discharge affects sediment-water fluxes through seasonally high nutrient loading which leads to net nutrient uptake by sediments in the upper bay and release in the lower bay, where there is less river influnces.