Formulation, implementation and examination of vertical coordinate choices in the Global Navy Coastal Ocean Model (NCOM)

A 1/8° global version of the Navy Coastal Ocean Model (NCOM) is described with details of its formulation, implementation, and configuration of the vertical coordinate. NCOM is a baroclinic, hydrostatic, Boussinesq, free-surface ocean model that allows its vertical coordinate to consist of σ coordinates for the upper layers and z-levels below a user-specified depth. This flexibility allows implementation of a hybrid σ–z coordinate system that is expected to mitigate some of the weaknesses that can be associated with either pure coordinate option. For the global NCOM application, the σ–z coordinate is used to allow terrain-following σ coordinates in the upper ocean, providing better resolution and topographic fidelity in shelf regions where flow is most sensitive to its representation. Including z coordinates for deeper regions efficiently maintains high near-surface vertical resolution in the open ocean. Investigation into the impact of the selected coordinate system focuses on differences between atmospherically-forced free-running (no assimilation) global solutions using σ–z and pure z coordinates. Comparisons with independent temperature observations indicate that global NCOM using the σ–z coordinate has improved skill relative to its z coordinate implementation. Among other metrics, we show that in comparison with time series of surface temperature from National Oceanic Data Center (NODC) buoys, mostly located in coastal regions, root mean squared differences (RMSD) improved for 63% and correlation improved for 71% of the stations when σ–z coordinates were used instead of pure z. For the exclusively open-ocean Tropical Atmosphere-Ocean (TAO) buoys, differences between the simulations were small, with the σ–z showing smaller RMSD for 45% of the stations and higher correlation for 65% of the stations. Additional comparisons using temperature profile observations further confirm a tendency for improved performance using the hybrid σ–z coordinates.     

Variation in mesozooplankton community structure in the Japan/East Sea (1991–1999) with possible influence of the ENSO scale climatic variability

Seasonal and interannual change in mesozooplankton community structure in the offshore Tsushima Current area of the Japan/East Sea was studied in relation to climatic events and temporal variability of the upper water column environment from 1991 to 1999. We observed a clear seasonal succession in zooplankton community structure from a cold-water copepod-dominated community in winter and spring to a gelatinous, carnivorous and warm-water copepod-dominated community in summer and autumn. The mean abundance (inds. m⁻³) of the spring community was 3–4-fold higher than that of the other season. The spring community structure varied considerably between years: the community characterized by the summer–autumn type zooplankton assemblage appeared in 1991–1993 and 1998, while the community characterized by high abundance of cold-water copepods appeared in the mid 1990s. Time series profiles of water density and nutrients showed the thickness of the surface warm Tsushima Current and the cold subsurface water increased and decreased, respectively, limiting nutrient supply to the surface water in 1992 and 1998. These results suggest that a thick, warm surface layer might reduce the reproductive success and survival ratio of the cold-water copepods both directly and indirectly, by hindering their upward migration to the surface where food is available, and by limiting phytoplankton growth due to nutrient depletion, respectively. A Monsoon Index (MOI) showed weaker winter wind stress in 1992 and 1998, which might have attenuated formation of the cold subsurface layer in the northern Japan/East Sea and been responsible for surface warming of the study area. Since 1992 and 1998 were El Niño years, this study revealed that ENSO related climatic variability on an interannual time scale considerably influenced the lower trophic level ecosystem in the Japan/East Sea.