黄土地层中的CaCO3与环境

本文根据大量观察分析,对黄土地层中的CaCO₃含量、存在形式、淀积深度进行了研究,并进行了分类。结果表明,不仅CaCO₃含量能够反映气候变化,而且其存在形式和淀积深度同样能反映气候变化;其淀积深度很少受时间影响,比含量更能可靠地用于气候研究。     

Experimental determination of carbon isotope fractionation between CaCO3 and graphite

Carbon isotopic exchange between graphite and three polymorphs of CaCO₃ was investigated at temperatures of 600-1400 °C and at pressures from 1.4 to 2.3 GPa. Fractionation factors at all temperatures were determined by the partial exchange treatment of Northrop and Clayton (1966).Graphite starting material for the majority of the experiments was milled in water for 20-25 h, producing aggregates of nanosheets. The sheets range in width from 50 to 1000 nm and in thickness from 20 to 30 nm, and they retain hexagonal symmetry.Isotopic exchange appears to be the sum of surface exchange and interior exchange. At 1100-1400 °C, interior exchange exceeded surface exchange, probably by a combination of grain growth, as determined by increase in crystallite size, recrystallization, as observed in FESEM images, and diffusion. In some runs at 1200 and 1400 °C with an isotopic contrast between the initial graphite and calcite of close to 50‰, equilibrium fractionation was actually overstepped due to a kinetic effect. A weighted regression of fractionation factors from the high-temperature runs yields the line of equilibrium interior exchange:

     

The role of sulfate groups in controlling CaCO3 polymorphism

The nucleation and growth of CaCO₃ phases from aqueous solutions with SO₄²⁻:CO₃²⁻ ratios from 0 to 1.62 and a pH of ∼10.9 were studied experimentally in batch reactors at 25 °C. The mineralogy, morphology and composition of the precipitates were characterized by X-ray diffraction, Fourier transform infrared spectroscopy, scanning electron microscopy and microanalyses. The solids recovered after short reaction times (5 min to 1 h) consisted of a mixture of calcite and vaterite, with a S content that linearly correlates with the SO₄²⁻:CO₃²⁻ ratio in the aqueous solution. The solvent-mediated transformation of vaterite to calcite subsequently occurred. After 24 h of equilibration, calcite was the only phase present in the precipitate for aqueous solutions with SO₄²⁻:CO₃²⁻ ? 1. For SO₄²⁻:CO₃²⁻ > 1, vaterite persisted as a major phase for a longer time (>250 h for SO₄²⁻:CO₃²⁻ = 1.62). To study the role of sulfate in stabilizing vaterite, we performed a molecular simulation of the substitution of sulfate for carbonate groups into the crystal structure of vaterite, aragonite and calcite. The results obtained show that the incorporation of small amounts (<3 mole%) of sulfate is energetically favorable in the vaterite structure, unfavorable in calcite and very unfavorable in aragonite. The computer modeling provided thermodynamic information, which, combined with kinetic arguments, allowed us to put forward a plausible explanation for the observed crystallization behavior.     

Subsolidus and melting relationships for calcite,magnesite and the join CaCO3-MgCO3 36 kb

Subsolidus and melting relations for the CaCO₃-MgCO₃ join at 30 kb have been determined using piston-cylinder apparatus. Data are also presented for the melting curve of CaCO₃ to 30 kb, the decomposition and melting curves of MgCO₃ to 36 kb, and the calcite-aragonite transition at 800°C, 950°C and 1100°C. At 30kb, the melting loop for the CaCO₃-MgCO₃ join extends from 1610°C (CaCO₃) to 1585°C (MgCO₃) through a liquidus minimum at 1290°C (near 42 mole% MgCO₃). The dolomite-magnesite solvus barely intersects the 30 kb melting loop to produce a peritectic reaction at 1385°C. Integration of the new experimental data with other published data permits construction of a complete P-T projection and a sequence of isobars for the CaCO₃-MgCO₃ join for pressures between 5 and 30 kb. The phase relations for this join provide part of the essential framework of the model peridotite system CaO-MgO-SiO₈-CO₂-H₂O, which has particular application to the origin of carbonatitic and kimberlitic magmas. In light of the accumulating evidence for CO₂ in various forms within the upper mantle and of its effect on magmatic processes, analysis of the melting relations in this system is of considerable importance.     

The stability of CaCO3·6H2O (ikaite)

Experimental runs were made in cold-seal pressure vessels using synthetic CaCO₈·6H₂O, calcite and aragonite as starting materials. The reaction CaCO₃·6H₂O (ikaite) ? CaCO₃ (calcite I) + 6H₂O was reversed across its metastable extension into the aragonite stability field and the phase boundary is defined by brackets at 4.14kb, 14.3°C and 2.96 kb, ?3.0°C. An invariant point for CaCO₃·6H₂O, calcite I, aragonite and water thus occurs at about 3.02 kb and ?2.0°C. No other reaction could be reversed. Calculations based on the equilibrium phase boundary between calcite and ikaite and the available thermochemical data for calcite and water yield the stadard free energy of formation, standard enthalpy of formation and third law entropy of CaCO₃·6H₂O at 25°C and 1 bar total pressure; ?607.3 kcal/mole, ?705.8 kcal/mole, and 88.4 cal/deg mole, respectively.     

Calcite dissolution kinetics in the system CaCO3-H2O-CO2 at high undersaturation

Dissolution rates of limestone covered by a water film open to a CO₂-containing atmosphere are controlled by the chemical composition of the CaCO₃-H₂O-CO₂ solution at the water-mineral interface. This composition is determined by the Ca²⁺-concentration at this boundary, conversion of CO₂ into H⁺ and in the solution, and by diffusional mass transport of the dissolved species from and towards the water-limestone interface. A system of coupled diffusion-reaction equations for Ca²⁺, , and CO₂ is derived. The Ca²⁺ flux rates at the surface of the mineral are defined by the PWP-empirical rate law. These flux rates by the rules of stoichiometry must be equal to the flux rates of CO₂ across the air-water interface. In the solution, CO₂ is converted into H⁺ and . At low water-film thickness this reaction becomes rate limiting. The time dependent diffusion-reaction equations are solved for free drift dissolution by a finite-difference scheme, to obtain the dissolution rate of calcite as a function of the average calcium concentration in the water film. Dissolution rates are obtained for high undersaturation. The results reveal two regimes of linear dissolution kinetics, which can be described by a rate law F = α_i(m_ic_eq − c), where c is the calcium concentration in the water film, c_eq the equilibrium concentration with respect to calcite. For index i = 0, a fast rate law, which here is reported for the first time, is found with α₀ = 3 × 10⁻⁶ m s⁻¹ and m₀ = 0.3. For c > m₀c_eq, a slow rate law is valid with α₁ = 3 × 10⁻⁷ m  s⁻¹ and m₁ = 1, which confirms earlier work. The numbers given above are valid for film thickness of several tenths of a millimetre and at 20 °C. These rates are proven experimentally, using a flat inclined limestone plate covered by a laminar flowing water film injected at an input point with known flow rate Q and calcium concentration. From the concentration measured after flow distance x the dissolution rates are determined. These experiments have been performed at a carbon-dioxide pressure of 0.00035 atm and also of 0.01 atm. The results are in good agreement to the theoretical predictions.     

The formation, and clay mineral and CaCO3 association reactions of melanoidins

Melanoidin syntheses, which are carried out by preparing aqueous solutions of glucose and glycine, and glucose and alanine are examined with respect to variation of concentration of reactants, hydrogen ion concentration, molecular weights, functional groups and elemental compositions with increasing heating time at constant temperature (90°C). The experiments reveal that “melanoidins” consist of a mixture of fulvic acid-, humic acid- and kerogen-like polymers, with the initial formation of fulvic acid-, followed by humic acid- and kerogen-like polymers, but showing a period of coexistence of humic acid- and kerogen-like polymers. The kerogen-like polymers have elemental compositions similar to type II or II/III kerogens. The rate of melanoidin formation is much higher in the presence of montmorillonite. The CaCO₃ association reactions of the same experiments, however, show extremely low rates of melanoidin formation. Laboratory simulations seem to be consistent with the observation that carbonate sediments usually contain small amounts of kerogens compared with clayey sediments, both Recent and ancient.     

Activity-composition relations in the system CaCO3-MgCO3 predicted from static structure energy calculations and Monte Carlo simulations

Thermodynamic mixing properties and subsolidus phase relations of the rhombohedral carbonate system, (1 − x) · CaCO₃ − x · MgCO₃, were modelled in the temperature range of 623-2023 K with static structure energy calculations based on well-parameterised empirical interatomic potentials. Relaxed static structure energies of a large set of randomly varied structures in a 4 × 4 × 1 supercell of calcite (a = 19.952 Å, c = 17.061 Å) were calculated with the General Utility Lattice Program (GULP). These energies were cluster expanded in a basis set of 12 pair-wise effective interactions. Temperature-dependent enthalpies of mixing were calculated by the Monte Carlo method. Free energies of mixing were obtained by thermodynamic integration of the Monte Carlo results. The calculated phase diagram is in good agreement with experimental phase boundaries.     

High pressure equation of state for molten CaCO3 from first principles simulations

Carbonate melts are important active metasomatic agents and efficient transport agents; their thermodynamic properties at high temperatures and pressures are therefore of considerable interest for various geochemica applications. However, due to the extreme challenges in relevant experiments, current knowledge of even the density of carbonate melts is limited. In this study, we provide high quality volumetric data of Ca CO3-melt from firs principles at high temperatures and pressures(up to3,500 K and 60 GPa). The accuracy of these data is demonstrated through comprehensive comparison with available experimental data and a thorough discussion of the predictability of the re-scaling method proposed in this study. Based on the simulations, an equation of state has been established that is critical to relevant highly disputed questions such as the decomposition and solidification boundaries of Ca CO3 melts, the latter of which is briefly discussed in this study with a newly derived ab initio melting curve to high pressures.     

黄土地层中CaCO3含量变化与更新世气候旋迴

深海沉积物剖面中CaCO₃含量变化与气候变迁密切相关,冰期时的高,间冰期时的低。若大陆上黄土地层中CaCO₃含量变化也有类似的性质,就更有利于气候长期变迁的海—陆对比以及探讨气候变迁的原因。本文根据陕西洛川黄土地层剖面中110多块样品的分析资料,用相关分析和方差分析,考察CaCO₃含量与黄土、古土壤形成环境的关系,并用频谱分析初步探讨约70万年来气候变迁的周期以及气候变迁的海—陆对比等问题。     

How do mineral coatings affect dissolution rates? An experimental study of coupled CaCO3 dissolution—CdCO3 precipitation

Coupled CaCO₃ dissolution-otavite (CdCO₃) precipitation experiments have been performed to 1) quantify the effect of mineral coatings on dissolution rates, and 2) to explore the possible application of this coupled process to the remediation of polluted waters. All experiments were performed at 25°C in mixed-flow reactors. Various CaCO₃ solids were used in the experiments including calcite, aragonite, and ground clam, mussel, and cockle shells. Precipitation was induced by the presence of Cd(NO₃)₂ in the inlet solution, which combined with aqueous carbonate liberated by CaCO₃ dissolution to supersaturate otavite. The precipitation of an otavite layer of less than 0.01 μm in thickness on calcite surfaces decreases its dissolution rate by close to two orders of magnitude. This decrease in calcite dissolution rates lowers aqueous carbonate concentrations in the reactor such that the mixed-flow reactor experiments attain a steady-state where the reactive fluid is approximately in equilibrium with otavite, arresting its precipitation. In contrast, otavite coatings are far less efficient in lowering aragonite, and ground clam, mussel, and cockle shell dissolution rates, which are comprised primarily of aragonite. A steady-state is only attained after the precipitation of an otavite layer of 3-10 μm thick; the steady state CaCO₃ dissolution rate is 1-2 orders of magnitude lower than that in the absence of otavite coatings. The difference in behavior is interpreted to stem from the relative crystallographic structures of the dissolving and precipitating minerals. As otavite is isostructural with respect to calcite, it precipitates by epitaxial growth directly on the calcite, efficiently slowing dissolution. In contrast, otavite’s structure is appreciably different from that of aragonite. Thus, it will precipitate by random three dimensional heterogeneous nucleation, leaving some pore space at the otavite-aragonite interface. This pore space allows aragonite dissolution to continue relatively unaffected by thin layers of precipitated otavite. Due to the inefficiency of otavite coatings to slow aragonite and ground aragonite shell dissolution, aragonite appears to be a far better Cd scavenging material for cleaning polluted waste waters.     

风化淋滤带地质新理论-CaCO3淀积深度理论

根据黄土高原第四纪古土壤和风化带的广泛调查,发现了CaCO₃ 等化学成分的不连续淀积、厚层及多层淀积等特殊地质现象,结合CaCO₃ 含量分析与入渗实验资料,建立了风化淋滤带CaCO₃ 淀积深度新理论。该理论表明,CaCO₃ 迁移到淀积深度所需时间很短,可以忽略时间因素对它的影响,能够作为研究风化淋滤带的许多地质问题的较可靠依据。当CaCO₃ 淀积深度小于古土壤发育带厚度时,可确定土壤已向风化壳转变 当Ca CO₃ 淀积深度大于古土壤层厚度时,可确定土壤为淋溶型、中酸性土壤 当同一风化剖面中或同一层古土壤下部出现两层、三层或厚度异常大的CaCO₃ 淀积层时,指示当时出现了两个或两个以上成壤期和相应的气候变化。     

The dolomitization of CaCO3: an experimental study at 252–295°C

The results of experiments on the hydrothermal dolomitization of calcite (between 252 and 295°C) and aragonite (at 252°C) by a 2 M CaCl₂-MgCl₂ aqueous solution are reported and discussed. Dolomitization of calcite proceeds via an intermediate high (ca. 35 mole %) magnesian calcite, whereas that of aragonite is carried out through the conversion of the reactant into a low (5.6 mole %) magnesian calcite which in turn transforms into a high (39.6 mole %) magnesian calcite. Both the intermediate phases and dolomite crystallize through a dissolution-precipitation reaction. The intermediate phases form under local equilibrium within a reaction zone surrounding the dissolving reactant grains. The volume of the reaction zone solution can be estimated from Sr²⁺ and Mg²⁺ partitioning equations. In the case of low magnesian calcite growing at the expense of aragonite at 252°C, the total volume of these zones is in the range of 2 × 10^?5 to 2 × 10^?4 1., out of 5 × 10^?3 1., the volume of the bulk solution.The apparent activation energies for the initial crystallization of high magnesian calcite and dolomite are 48 and 49 kcal/mole, respectively.Calcite transforms completely into dolomite within 100 hr at 252°C. The overall reaction time is reduced to approximately 4 hr at 295°C. The transformation of aragonite to dolomite at 252°C occurs within 24 hr. The nature of the reactant dictates the relative rates of crystallization of the intermediate phases and dolomite. With calcite as reactant, dolomite growth is faster than that of magnesian calcite; this situation is reversed when aragonite is dolomitized.Coprecipitation of Sr²⁺ with dolomite is independent of temperature (within analytical error) between 252 and 295°C. Its partitioning, with respect to calcium, between dolomite and solution results in distribution coefficients in the range of 2.31 × 10^?2 to 2.78 × 10^?2.     

The solubilities of calcite,aragonite and vaterite in CO2-H2O solutions between 0 and 90°C,and an evaluation of the aqueous model for the system CaCO3-CO2-H2O

Calculations based on approximately 350 new measurements (Ca_T-PCO₂) of the solubilities of calcite, aragonite and vaterite in CO₂-H₂O solutions between 0 and 90°C indicate the following values for the log of the equilibrium constants K_C, K_A, and K_V respectively, for the reaction CaCO₃(s) = Ca²⁺ + CO^2?₃: $\text{Log K}{}_{\mathrm{C}}\text{= ?171.9065 ? 0.077993T +}\text{2839.319}\text{T}\text{+ 71.595 log T}$$\text{Log K}{}_{\mathrm{A}}\text{= ?171.9773 ? 0.077993T +}\text{2903.293}\text{T}\text{+71.595 log T}$$\text{Log K}{}_{\mathrm{V}}\text{= ?172.1295 ? 0.077993T +}\text{3074.688}\text{T}\text{+ 71.595 log T}$ where T is in ^oK. At 25°C the logarithms of the equilibrium constants are ?8.480 ± 0.020, ?8.336 ± 0.020 and ?7.913 ± 0.020 for calcite, aragonite and vaterite, respectively.The equilibrium constants are internally consistent with an aqueous model that includes the CaHCO⁺₃ and CaCO⁰₃ ion pairs, revised analytical expressions for CO₂-H₂O equilibria, and extended Debye-Hückel individual ion activity coefficients. Using this aqueous model, the equilibrium constant of aragonite shows no PCO₂-dependence if the CaHCO⁺₃ association constant is between 0 and 90°C, corresponding to the value logK_Cahco⁺3 = 1.11 ± 0.07 at 25°C. The CaCO⁰₃ association constant was measured potentiometrically to be between 5 and 80°C, yielding logK_CaCO⁰3 = 3.22 ± 0.14 at 25°C.The CO₂-H₂O equilibria have been critically evaluated and new empirical expressions for the temperature dependence of K_H, K₁ and K₂ are $\text{log K}{}_{\mathrm{H}}\text{= 108.3865 + 0.01985076T ?}\text{6919.53}\text{T}\text{? 40.45154 log T +}\text{669365.}\text{T}{}^2$, $\text{log K}{}_1\text{= ?356.3094 ? 0.06091964T +}\text{21834.37}\text{T}\text{+ 126.8339 log T —}\text{1684915.}\text{T}{}^2$ and logK₂ = ?107.8871 ? 0.03252849T + 5151.79/T + 38.92561 logT ? 563713.9/T² which may be used to at least 250°C. These expressions hold for 1 atm. total pressure between 0 and 100°C and follow the vapor pressure curve of water at higher temperatures.Extensive measurements of the pH of Ca-HCO₃ solutions at 25°C and 0.956 atm PCO₂ using different compositions of the reference electrode filling solution show that measured differences in pH are closely approximated by differences in liquid-junction potential as calculated by the Henderson equation. Liquid-junction corrected pH measurements agree with the calculated pH within 0.003-0.011 pH.Earlier arguments suggesting that the CaHCO⁺₃ ion pair should not be included in the CaCO₃-CO₂-H₂O aqueous model were based on less accurate calcite solubility data. The CaHCO⁺₃ ion pair must be included in the aqueous model to account for the observed PCO₂-dependence of aragonite solubility between 317 ppm CO₂ and 100% CO₂.Previous literature on the solubility of CaCO₃ polymorphs have been critically evaluated using the aqueous model and the results are compared.     

Liquidus relationships in the system CaCO3Ca(OH)2CaS and the solubility of sulfur in carbonatite magmas

CaCO₃Ca(OH)₂CaS serves as a model system for sulfide solubility in carbonatite magmas. Experiments at 1 kbar delineate fields for primary crystallization of CaCO₃, Ca(OH)₂ and CaS. The three fields meet at a ternary eutectic at 652°C with liquid composition (wt%): CaCO₃ = 46.1%, Ca(OH)₂ = 51.9%, CaS = 2.0%. Two crystallization sequences are possible for liquids that precipitate calcite, depending upon whether the liquid is on the low-CaS side, or the high-CaS side of the line connecting CaCO₃ to the eutectic liquid. Low-CaS liquids precipitate no sulfide until the eutectic temperature is reached leading to sulfide enrichment. The higher-CaS liquids precipitate some sulfide above the eutectic temperature, but the sulfide content of the melt is not greatly depleted as the eutectic temperature is approached. Theoretical considerations indicate that sulfide solubility in carbonate melts will be directly proportional to and inversely proportional to ; it also is likely to be directly proportional to melt basicity, defined here by . A strong similarity exists in the processes which control sulfide solubility in carbonate and in silicate melts. By analogy with silicates, ferrous iron, which was absent in our experiments, may also exert an important influence on sulfide solubility in natural carbonatite magmas.     

A hydrofluoric acid solution calorimetric investigation of glasses in the systems NaAlSi3O8-KAlSi3O8 and NaAlSi3O8-Si4O8

Glasses in the systems NaAlSi₃O₈-KAlSi₃O₈ and NaAlSi₃O₈-Si₄O₈ have been studied by means of hydrofluoric acid solution calorimetry at 50°C. Results indicate small negative enthalpies of mixing in the former system and small positive departures from ideality in the latter.     

Thermochemistry of glasses and liquids in the systems CaMgSi2O6-CaAl2Si2O8-NaAlSi3O8, SiO2-CaAl2Si2O8-NaAlSi3O8 and SiO2-Al2O3-CaO-Na2O

Enthalpies of solution in 2PbO· B₂O₃ at 712°C have been measured for glasses in the systems albite anorthite diopside, NaAlO₂-SiO₂, Ca_0.5AlO₂-SiO₂ and albite-anorthite-quartz. The systems albite-anorthite and diopside-anorthite show substantial negative enthalpies of mixing, albite-diopside shows significant positive heats of mixing. For compositions up to NaAlO₂ = 0.42 (which includes the subsystem albite-silica) the system NaAlO₂-SiO₂ shows essentially zero heats of mixing. A negative ternary excess heat of mixing is found in the plagioclase-rich portion of the albite-anorthite-diopside system. The join Si₄O₈-CaAl₂Si₂O₈ shows small but significant heats of mixing. In albite-anorthite-quartz. ternary glasses, the ternary excess enthalpy of mixing is positive.Based on available heat capacity data and appropriate consideration of the glass transition, the enthalpy of the crystal-glass transition (vitrification) is a serious underestimate of the enthalpy of the crystal-liquid transition (fusion) especially when the melting point, T_f, is many hundreds of degrees higher than the glass transition temperature, T_g. On the other hand, the same heat capacity data suggest that the enthalpies of mixing in albite-anorthite-diopside liquids are calculated to be quite similar to those in the glasses. The enthalpies of mixing observed in general support the structural models proposed by Taylor and Brown (1979a, b) and others for the structure of aluminosilicate glasses.     

The MgO-Al2O3-SiO2 system: free energy of pyrope and Al2O3-enstatite

Using the model of fictive ideal components, Gibbs free energies of formation of pyrope and Al₂O₃-enstatite have been determined from the experimental data on coexisting garnet and orthopyroxene and orthopyroxene and spinel in the temperature range of 1200–1600 K. The negative free energies in kJ/mol are:

     

20.

Precipitation of amorphous CaCO₃ (aragonite-like) by cyanobacteria: A STXM study of the influence of EPS on the nucleation process   总被引：2，自引：0，他引：2  

M. Obst  J.J. Dynes  J.R. Lawrence  K. Benzerara  K. Kaznatcheev  A.P. Hitchcock 《Geochimica et cosmochimica acta》2009,73(14):4180-1841

An amorphous or nanocrystalline calcium carbonate (ACC) phase with aragonite-like short-range order was found to be a transient precursor phase of calcite precipitation mediated by cyanobacteria of the strain Synechococcus leopoliensis PCC 7942. Using scanning transmission X-ray microscopy (STXM), different Ca-species such as calcite, aragonite-like CaCO₃, and Ca adsorbed on extracellular polymers were discriminated and mapped, together with various organic compounds, at the 30 nm-scale. The nucleation of the amorphous aragonite-like CaCO₃ was found to take place within the tightly bound extracellular polymeric substances (EPS) produced by the cyanobacteria very close to the cell wall. The aragonite-like CaCO₃ is a type of ACC since it did not show either X-ray or electron diffraction peaks. The amount of aragonite-like CaCO₃ precipitated in the EPS was dependent on the nutrient supply during bacterial growth. Higher nutrient concentrations (both N and P) during the cultivation of the cyanobacteria resulted in higher amounts of precipitation of the aragonite-like CaCO₃, whereas the amount of Ca²⁺ adsorbed per volume of EPS was almost independent of the nutrient level. After the onset of the precipitation of the thermodynamically stable calcite and loss of supersaturation the aragonite-like CaCO₃ dissolved whereas Ca²⁺ remained sorbed to the EPS albeit at lower concentrations. Based on these observations a model describing the temporal and spatial evolution of calcite nucleation on the surface of S. leopoliensis was developed. In another set of STXM experiments the amount of aragonite-like CaCO₃ precipitated on the cell surface was found to depend on the culture growth phase: cells in the exponential growth phase adsorbed large amounts of Ca within the EPS and mediated nucleation of ACC, while cells at the stationary/death phase neither adsorbed large amounts of Ca²⁺ nor mediated the formation of aragonite-like CaCO₃. It is suggested that precipitation of an X-ray amorphous CaCO₃ layer by cyanobacteria could serve as a protection mechanism against uncontrolled precipitation of a thermodynamically stable phase calcite on their surface.     

TK	1200	1300	1400	1500	1600
Pyrope	4869.92	4747.05	4614.26	4462.63	4311.00
Al2O3-enstatite	1257.25	1244.28	1191.93	1158.67	1125.64

Precipitation of amorphous CaCO3 (aragonite-like) by cyanobacteria: A STXM study of the influence of EPS on the nucleation process

An amorphous or nanocrystalline calcium carbonate (ACC) phase with aragonite-like short-range order was found to be a transient precursor phase of calcite precipitation mediated by cyanobacteria of the strain Synechococcus leopoliensis PCC 7942. Using scanning transmission X-ray microscopy (STXM), different Ca-species such as calcite, aragonite-like CaCO₃, and Ca adsorbed on extracellular polymers were discriminated and mapped, together with various organic compounds, at the 30 nm-scale. The nucleation of the amorphous aragonite-like CaCO₃ was found to take place within the tightly bound extracellular polymeric substances (EPS) produced by the cyanobacteria very close to the cell wall. The aragonite-like CaCO₃ is a type of ACC since it did not show either X-ray or electron diffraction peaks. The amount of aragonite-like CaCO₃ precipitated in the EPS was dependent on the nutrient supply during bacterial growth. Higher nutrient concentrations (both N and P) during the cultivation of the cyanobacteria resulted in higher amounts of precipitation of the aragonite-like CaCO₃, whereas the amount of Ca²⁺ adsorbed per volume of EPS was almost independent of the nutrient level. After the onset of the precipitation of the thermodynamically stable calcite and loss of supersaturation the aragonite-like CaCO₃ dissolved whereas Ca²⁺ remained sorbed to the EPS albeit at lower concentrations. Based on these observations a model describing the temporal and spatial evolution of calcite nucleation on the surface of S. leopoliensis was developed. In another set of STXM experiments the amount of aragonite-like CaCO₃ precipitated on the cell surface was found to depend on the culture growth phase: cells in the exponential growth phase adsorbed large amounts of Ca within the EPS and mediated nucleation of ACC, while cells at the stationary/death phase neither adsorbed large amounts of Ca²⁺ nor mediated the formation of aragonite-like CaCO₃. It is suggested that precipitation of an X-ray amorphous CaCO₃ layer by cyanobacteria could serve as a protection mechanism against uncontrolled precipitation of a thermodynamically stable phase calcite on their surface.