Assemblages of animals around urban structures: testing hypotheses of patterns in sediments under boat-mooring pontoons

Assemblages of animals in soft-sediments were studied in relation to pontoons for mooring private boats in two estuaries near Sydney, Australia. Based on previously observed patterns around other types of artificial structures, it was predicted that assemblages of animals under pontoons would be different from those in similar areas away from pontoons. Hypotheses about overall differences in average abundance and composition between sites with and without pontoons were tested, as were hypotheses about variable differences among and within estuaries. Analyses revealed that there were fewer crustaceans under pontoons in one estuary. The most conspicuous patterns related to pontoons were, however, differences in variability among sites with pontoons compared to sites without pontoons. Differences in spatial variability were found for the overall multivariate structure using Bray-Curtis dissimilarities and for abundances of most major taxa. Total abundance was approximately 60 times more variable among sites without pontoons and number of taxa were seven times more variable among sites with pontoons. Such patterns indicate that impacts of pontoons occur at some sites but not at others. This may be explained by intrinsic differences among sites or by differences in practices for maintenance. Predictions from these two contrasting models need to be tested in order to achieve efficient management of this type of structure.     

Spatial pattern of coastal fish assemblages in different habitats in North‐western Mediterranean

Variability of fish assemblages across habitat structures can depend on spatial scales. A hierarchical sampling design was used to assess the spatial variability of temperate fish assemblages in different habitats and at multiple scales. Underwater visual censuses were carried out along the coasts of Elba Island (NW Mediterranean) on Posidonia oceanica beds, rocky algal reefs and sandy habitat at three spatial scales, namely tens of metres (individual replicates), hundreds of metres (sites) and tens of kilometres (locations). At the assemblage level, there was a clear relationship between fish and habitat type and the observed habitat‐related differences were largely dependent on species identity. Fish assemblages on P. oceanica beds and rocky reefs shared a high number of species, whereas overlap with sandy assemblages was negligible. Multivariate analyses revealed significant differences in fish assemblages among habitats, although there was also a significant habitat × site interaction. These differences relied mainly upon assemblage composition and species richness. Assemblages on rocky reefs and P. oceanica meadows usually harboured a higher number of species and individuals compared with sandy assemblages. Nevertheless, the patterns of habitat‐related differences in species richness and, especially, in the total number of fish, changed significantly from site to site. Eight species showed significant differences over habitats, but they were not consistent due to the interaction of habitat with site. Predictability of fish at both assemblage and population levels decreased with the scale of observation, and the spatial pattern of fish observed at the smallest scale was likely dependent on factors other than habitat type.     

Effects of substratum type on fish assemblages in shallow areas of a tropical estuary

While there is already a comprehensive understanding of the effects of environmental variables, such as dissolved oxygen, temperature and salinity, on the structure, biomass and metabolism of aquatic biota in estuarine habitats, the effect of sedimentation, a harmful underlying factor, remains unclear. The aim of this study was to assess the differences in fish assemblages along the freshwater to salt water gradient of a large tropical estuary, and to evaluate the effects on them of habitat disturbance associated with shallow water sedimentation in the intertidal areas. Fish and environmental variables were recorded in the upper, middle and lower salinity zones of the estuary at ebb tide in both the dry and wet seasons. Sediment samples associated with different levels of habitat disturbance were analysed using granulometry, and their organic content and dissolved oxygen levels were quantified. Water temperature, salinity, pH and dissolved oxygen levels were also measured. Habitat disturbance was found to be correlated with the density, biomass and richness of fish assemblages. A total of 77 species were recorded, forming two distinct fish assemblages, with the Eleotridae family dominating in the upper zone, and Gerreidae, Gobiidae and Tetraodontidae the most common in the middle and lower estuary. Changes in the structure of fish assemblages, including reductions in density, biomass and richness, were associated with disturbance to natural features, where muddy sediment was replaced by sandy sediment and the quantity of organic matter fell. Atherinella brasiliensis was the species which showed a preference for the disturbed areas in the middle and lower zones, while Dormitator maculatus showed a preference for them in the upper estuary. They may be taken as indicators of habitat disturbance due to shallow sedimentation.     

Evaluating the effects of protection on fish predators and sea urchins in shallow artificial rocky habitats: a case study in the northern Adriatic Sea

Man-made defence structures (e.g., breakwaters, jetties) are becoming common features of marine coastal landscapes all around the world. The ecology of assemblages of species associated with such artificial structures is, however, poorly known. In this study, we evaluated the density and size of fish predators of echinoids (i.e., Diplodus sargus, Diplodus vulgaris, Sparus aurata), and the density of sea urchins (i.e., Paracentrotus lividus) at defence structures (i.e., breakwaters) inside and outside the marine protected area of Miramare (northern Adriatic Sea) in order to: (1) assess possible differences in fish predator density and size between protected and fished breakwaters; (2) assess whether fish predation may have the potential to affect sea urchin density in artificial rocky habitats. Surveys were carried out at four random times over a period of two years. Total density, and density of medium- and large-sized individuals of the three predatory fishes were generally greater at the protected than at the fished breakwaters, whereas no differences were detected in the density of small-sized individuals. Density of the sea urchin P. lividus did not show any difference between protected and fished breakwaters. The results of this study suggest that: (1) protection may significantly affect predatory fishes in artificial rocky habitats; (2) differences in predatory fish density, and size may be unrelated with the density of the sea urchin P. lividus; (3) protected artificial structures such as breakwaters, originally planned for other purposes, could represent a potential tool for fish population recovery and enhancement of local fisheries.     

Consistency of temporal and habitat-related differences among assemblages of fish in coastal lagoons

The consistency of habitat-related differences in coastal lagoon fish assemblages was assessed across different spatial and temporal scales. Multimesh gillnets were used to sample assemblages of fish on a monthly basis for 1-year in three habitats (shallow seagrass, shallow bare and deep substrata) at two locations (>1 km apart), in each of two coastal lagoons (approximately 500 km apart), in southeastern Australia. A total of 48 species was sampled with 34 species occurring in both lagoons and in all three habitats; species caught in only one lagoon or habitat occurred in low numbers. Ten species dominated assemblages and accounted for more than 83% of all individuals sampled. In both lagoons, assemblages in the deep habitat consistently differed to those in the shallow strata (regardless of habitat). Several species were caught more frequently or in larger numbers in the deep habitat. Assemblages in the two shallow habitats did not differ consistently and were dominated by the same species and sizes of fish, possibly due to habitat heterogeneity and the scale and method of sampling. Within each lagoon, very few between location differences in assemblages within each habitat were observed. Consistent differences in assemblages were detected between lagoons for the shallow bare and deep habitats, indicating there were some intrinsic differences in ichthyofauna between lagoons. Assemblages in spring differed to those in summer, which differed to those in winter for the shallow bare habitat in both lagoons, and the deep habitat in only one lagoon. Fish-habitat relationships are complex and differences in the fish fauna between habitats were often temporally inconsistent. This study highlights the need for greater testing of habitat relationships in space and time to assess the generality of observations and to identify the processes responsible for structuring assemblages.     

Material type and roughness influence structure of inter‐tidal communities on coastal defenses

On a global scale, urbanization has resulted in substantial proportions of coasts being replaced by artificial structures such as marinas, breakwaters and seawalls. There is broad consensus that coastal defense structures are poor surrogates of the natural habitats that they replace. Here we investigated the effects of the type and roughness of materials used for the construction of artificial structures on the surrounding biota by comparing abundances and distribution of key inter‐tidal taxa between natural shores and coastal defenses. Lower abundances of gastropods and barnacles were found on artificial coastal defense structures (regardless of the material type). At small spatial scales, abundances of key taxa increased with increasing roughness. Our results suggest that the choice of materials used for the construction of coastal defense structures has little effect on community structure per se, but that enhanced roughness could make coastal defenses better surrogates of natural habitats by supporting assemblages that are more similar to those found on natural shores.     

Use of shallow water habitats by fish assemblages in a Mediterranean coastal lagoon

The present study investigates the different uses and the functional roles of shallow habitats for fish fauna in the Venice Lagoon, by applying the functional guilds approach. Temporal (seasons) and spatial (location) changes within the lagoon show different habitat uses by fish assemblages, not influenced by local factors. Unvegetated mud habitats (salt marsh creeks and sub-tidal mud flats) and sparsely vegetated (seagrass) habitats show a common nursery role, especially for marine migrant fishes; but, contrary to other similar areas elsewhere shallow seagrass beds in the Venice Lagoon do not have a primary nursery role. This latter habitat has a more important role as a spawning ground for a resident, highly specialized component of the fish community. The habitat uses and their role to fish fauna illustrate the balance between predation risk and foraging profitability, as major factors structuring the fish assemblages. Spatial effects at a larger scale also highlight general characteristics of the fish assemblages in the Venice Lagoon. These indicate differences between the Northern sub-basin and the other two lagoon sub-basins, due to differences in the hydrodynamic regime, habitats distribution, and contributions from land and sea.     

Spatial discordance in fish,coral, and sponge assemblages across a Caribbean atoll reef gradient

Certain biodiversity patterns on coral reefs are generally consistent but we still lack fundamental insight into how assemblages vary across spatially heterogeneous reef systems. We compared fish, coral, and sponge assemblages across a symmetrical physiographical gradient (windward forereef, lagoon patch reef, leeward forereef) of the Glover's Reef atoll, Belize. Species richness of fishes and corals was highest in the deep habitat (15 m) on the windward forereef. Sponges were diverse and abundant on both deep windward and leeward forereefs but not on the exposed shallow (5 m) windward forereef. Fish and benthic assemblages were relatively distinct in each reef zone, with the lagoon patch reef communities consisting of a combination of leeward and windward species. Nevertheless, there were no clear patterns in community similarity matrices of fish and benthic assemblages, suggesting that overall coral and sponge assemblages had weak or no direct association with patterns in fish assemblages. A closer examination of fish trophic groups indicated that planktivores and predators were predictably associated with depth, whereas herbivores were associated with shallow protected reefs. None was specifically associated with spatial location along the atoll gradient. These patterns of diversity distribution are important for identifying spatial conservation priorities. A Marine Protected Area (MPA) at Glover's Reef encompasses substantial windward forereef and patch reef habitats. A much lesser extent of protection is afforded the leeward forereef that supports faunal assemblages that are unique and productive, if not as diverse as the windward forereef. Isolated coral atolls can serve as ideal systems to study spatial heterogeneity and biodiversity patterns, but more experimental studies are needed to reveal the mechanistic processes underlying these patterns.     

Relative and combined effects of habitat and fishing on reef fish communities across a limited fishing gradient at Ningaloo

Habitat degradation and fishing are major drivers of temporal and spatial changes in fish communities. The independent effects of these drivers are well documented, but the relative importance and interaction between fishing and habitat shifts is poorly understood, particularly in complex systems such as coral reefs. To assess the combined and relative effects of fishing and habitat we examined the composition of fish communities on patch reefs across a gradient of high to low structural complexity in fished and unfished areas of the Ningaloo Marine Park, Western Australia. Biomass and species richness of fish were positively correlated with structural complexity of reefs and negatively related to macroalgal cover. Total abundance of fish was also positively related to structural complexity, however this relationship was stronger on fished reefs than those where fishing is prohibited. The interaction between habitat condition and fishing pressure is primarily due to the high abundance of small bodied planktivorous fish on fished reefs. However, the influence of management zones on the abundance and biomass of predators and target species is small, implying spatial differences in fishing pressure are low and unlikely to be driving this interaction. Our results emphasise the importance of habitat in structuring reef fish communities on coral reefs especially when gradients in fishing pressure are low. The influence of fishing effort on this relationship may however become more important as fishing pressure increases.     

Extending the generality of ecological models to artificial floating habitats

Marine assemblages on natural hard substrata are generally different from those on artificial habitats. There is, however, the potential for certain ecological processes to operate on both types of structures. On the sides of floating pontoons in Sydney Harbour, there were strong patterns of vertical distribution of sessile epibiotic organisms and molluscan grazers across relatively small spatial scales (in three defined zones, namely splash, shallow and deep). Patterns of vertical distribution of the tubeworms Hydroides spp. were reversed depending on the cover of mussels. A manipulative experiment was done to test if patterns of vertical distribution of Hydroides spp. were due to (1) the functioning of mussels or (2) the structure provided by mussels. Neither the functioning nor structure of mussels accounted for the patterns of distribution of Hydroides spp. Mussels increased recruitment of Hydroides spp., in the shallow and deep zones, and this was not due to increased surface area of the mussel shells. Manipulation of numbers of grazers and covers of sessile epibiota showed that the observed negative relationship between grazers and epibiota was due to grazers reducing recruitment of epibiota and epibiota decreasing survival of grazers. Most importantly, processes that accounted for patterns of distribution of mobile and sessile organisms on artificial floating structures were similar to those repeatedly shown to create such patterns on natural rocky shores.     

Urban structures as marine habitats: an experimental comparison of the composition and abundance of subtidal epibiota among pilings, pontoons and rocky reefs

There remains little understanding of the relationship between the ecologies of urban habitats (pilings and pontoons) and natural habitats (rocky reef) for sessile plants and animals (epibiota) living on urbanised coasts. This study describes the structure of subtidal assemblages of epibiota among pilings, pontoons and adjacent rocky reef in Sydney Harbour, Australia. I tested the prediction that the experimental provision of substrata of the same age and composition in all three habitats would produce assemblages that: (1) differed among all three habitats; and (2) differed most on floating pontoons relative to the two fixed habitats (pilings and reef). As predicted, the results suggested that both pilings and pontoons, particularly the latter, create novel habitats for epibiotic assemblages independent of age and composition of substratum. It is not fully understood why these urban structures act as such different habitats from natural rocky reefs. The important point is that they are different and we are yet to understand the implications of this for the ecology of coastal areas subject to urbanisation.     

Effects of wild fish and motile epibenthic invertebrates on the benthos below an open water fish farm

A manipulative caging experiment was carried out to evaluate the role of wild fish and motile epibenthic invertebrates on the benthic system influenced by an open water fish farm. Chemical and biological parameters of the sediment were measured as indicators of the ecological benthic status. The combination of wild fish and currents notably lowered aquaculture waste sedimentation below the fish farm. The limited waste sedimentation rate could have limited the scavenger and predation activity of wild fish on the benthos, whose role may be taken over by motile epibenthic invertebrates. The interaction of these motile epibenthic invertebrates with the sediment differed from that observed with fish. The motile epibenthic invertebrates led to more reduced conditions with lower redox values, significantly decreased the number of species of macrofaunal benthic assemblages and significantly modified macrofaunal benthic assemblages. Therefore, epibenthic invertebrates do not seem to have an ameliorative effect on the benthic status produced by fish farming. Since the effects of epibenthic species on the benthic system can greatly vary according to their identity, further experiments should be performed to better understand the drivers that influence the epibenthic species identity that modulate the benthic system affected by fish farming.     

Influence of habitat structure on fish assemblage of an artificial reef in southern Brazil

Habitat complexity strongly influences reef fish community composition. An understanding of the underlying reasons for this relationship is important for evaluating the suitability of artificial reef (AR) habitats as a marine resource management tool. We studied the influence of AR habitat structure on fish assemblage composition off the southern coast of Brazil. We found that reef blocks with greater area and number of holes possessed the greatest fish species richness and abundance. Reef blocks with greater complexity had higher abundance of almost 30% of fish species present. Natural reef (NR) and AR were different in their fish species composition, trophic structure and categories of water column occupancy by fish (spatial categories). Although NR was more diverse and harboured more trophic levels, AR presented the higher abundances and the presence of distinct fish species that underlined their importance at a regional scale. The greater availability of sheltering habitat where hard substrate is scarce, together with their frequent use by economically important species, make AR a useful tool for coastal management when certain ecological conditions are met.     

Artificial Reefs in the Low Productive Marine Environments of the Southeastern Mediterranean

Abstract. Fishery yields in the oligotrophic waters of the Southeastern Mediterranean arc low due to habitat and food limitations. A four year study of a complex of artificial structures established in the coastal waters of Israel points to several possible solutions to these problems. One approach is the artificial enrichment of the man-made reef with trash fish. This, together with the configuration of the reef, caused a significant increase in the abundance of fish predators such as groupers of the genus Epinephclus. Omnivores and herbivores were attracted only by the presence of artificial structures. Some species, such as the slipper lobster Scyllurides lulus, only use the man-made reef for shelter during part of the day or season; they forage over a much larger area the rest of the time and are important "importers" of food to the artificial habitat. Artificial kelp were effective in recruiting juveniles and small fishes to the site.     

Patterns of colonization and succession of benthic assemblages in two artificial substrates

Benthic communities colonizing two different typologies of artificial structures, Tecnoreef® pyramids (PY), and plinth modules (PL), differing for material and shape, were investigated for three years after their deployment on a soft bottom offshore Pedaso (Western Adriatic Sea). The aims were to describe the colonization patterns of benthic assemblages on the two artificial modules, to highlight possible differences between them and to detect the effectiveness of the artificial reef on the ecosystem functioning.The composition of the benthic communities settled on the two types of artificial substrates was different especially just after the reef deployment. Abundance and species richness were higher on PL in the first two years, while an explosion of individuals characterized PY in the third year. This suggested a delay of about one year in the colonization processes on PY likely due to the material and shape. The community settled of the artificial structures was dominated by hard-substrate species which are commonly absent in the natural environment. The occurrence of these organisms enriched the local soft-bottom communities and contributed to habitat diversification. This, together with the importance of these species in the diet of a few reef-dwelling fish, confirms the trophic role and the ecological importance of artificial reefs in areas characterized by soft seabed.     

The Gambia River estuary: A reference point for estuarine fish assemblages studies in West Africa

The Gambia River is one of the last aquatic ecosystems in West Africa that has not yet been affected by strong environmental changes and human disturbances. In contrast to the neighbouring Casamance and Sine Saloum estuaries, the Gambia estuary is free of major climatic perturbation and remains a “normal” estuary, with a salinity range from freshwater to 39. The present paper aims to study the spatial and seasonal variability of fish assemblages in this estuary in terms of bio-ecological categories and of their relation with some environmental variables. Four surveys were conducted, from June 2001 to April 2002, in order to cover the major hydroclimatic events, at 44 sampling sites along the lower, intermediate and upper zones of the Gambia estuary (up to 220 km). Fish assemblages were sampled using a purse seine net, fish were identified to species level and environmental variables such as water depth, transparency, salinity, temperature and percentage oxygen saturation were measured. The main spatial structure of the fish assemblages and its seasonal changes were first studied using the STATIS-CoA multitable method. The combination of fish assemblages and environmental variables was then analysed using the STATICO method, designed for the simultaneous analysis of paired ecological tables. A total of 67 species were observed, belonging to all bio-ecological categories characterizing West African estuaries. The marine component of the community was largely dominant throughout the estuary, while the freshwater component was permanently observed only in the upstream zone. The main spatial structure was a longitudinal gradient contrasting marine and freshwater affinity assemblages, with strong seasonal variations. The most complete gradient was observed in December, at the beginning of the dry and cool season, while in June, at the end of the dry and warm season, there was the least structured gradient. The role of salinity, always correlated with temperature, was emphasized, while turbidity appeared to be another important factor. Oxygen and depth did not play a major role at the estuary scale. The relative importance of the bio-ecological categories varied according to the season and the distance to sea. Stable fish assemblages were observed in the lower zone at the end of the dry season, in the upper zone during the flood and in the middle zone throughout the year. In some situations, a relative inadequacy between fish assemblages and their environment was noticed. The present study contributes to the definition of the functioning of a “normal” West African estuary, the Gambia estuary, with balanced effects of marine and freshwater influences and the presence of all bio-ecological categories. The Gambia estuary can therefore be considered to be a reference ecosystem for further comparisons with other tropical estuarine ecosystems, subjected to natural or artificial perturbations.     

The influence of habitat availability on juvenile fish abundance in a northeastern New Zealand estuary

Management of fish populations is often focused on the exploitation of adult fish. Maintaining the habitat requirements of all life stages may also be an important consideration. We investigated the value of structured habitat to juvenile fishes within a northeastern New Zealand harbour using artificial seagrass units (ASUs). Specifically, we deployed ASUs across treatments with high vs. low habitat manipulations. We hypothesised that if the abundance of recruiting juvenile fishes was greater on the high habitat availability treatments this would suggest that the availability of habitat was limiting juvenile fish abundance. Our analyses were focused on the four most abundant fishes that settled on our ASUs: snapper (Pagrus auratus); spotty (Notolabrus celidotus); trevally (Pseudocaranx dentex); and an assemblage of pipefish species. For snapper, spotty and pipefish, abundance was greater on the high habitat availability treatments. This result would be unlikely to occur if the availability of juvenile fishes was limiting, suggesting that juvenile fish abundance is more likely to be limited by habitat. In terms of spatial gradients, spotty abundance and size increased with distance into the harbour. The spatial gradient present for spotty indicates the importance of placing the habitat dependency of juvenile fish into a landscape context. Overall, these results demonstrate that maintaining structured habitats may be an important consideration for some valuable inshore fish populations in northeastern New Zealand.     

Coral bleaching and habitat effects on colonisation of reef fish assemblages: An experimental study

Degradation and mortality of corals is increasing worldwide and is expected to have significant effects on coral reef fish; hence studies on these effects are essential. In the present study, a field experiment was set up within Mafia Island Marine Park in Tanzania (East Africa) to examine the effects of bleaching and habitat structure on colonisation of coral reef fish assemblages. Live and bleached staghorn coral Acropora formosa was transplanted onto plots in a site dominated by sand and rubble, and the experimental design comprised of three treatments: live coral, bleached coral and eroded coral rubble. There was an immediate increase (within 24 h) in fish abundance and diversity in the two treatments with standing corals. Overall, live and bleached coral plots showed similar effects, but differed from the eroded coral plots which had a much lower abundance and diversity of fish. In general, fish species diversity changed with time over the study period while fish abundance did not. Multivariate analyses showed that while there were differences in fish assemblage structure between standing corals and the eroded coral treatment, there was neither a difference between live and bleached coral treatments nor any temporal effects on fish assemblage structure. Our findings suggest that physical structure and complexity of habitat have stronger effects on colonisation of reef fish assemblages than changes in coral health (such as bleaching) which do not affect coral structure. This may have important implications for appropriate coral reef management.