Seasonal patterns in the fish and epibenthic crustaceans community of an intertidal zone with particular reference to the population dynamics of plaice and brown shrimp

The intertidal zone of a sandy beach located on the French coast of the Eastern Channel, was sampled during spring and summer 2000 to analyse the community structure of fish and epibenthic crustaceans. The presence of many juvenile fish (mainly O-group) and crustaceans indicated the important role played by the intertidal zone as a nursery ground. The brown shrimp, Crangon crangon and O-group plaice, Pleuronectes platessa are the two most abundant species of the intertidal ecosystem.Plaice settlement period extended from mid-March to early June. Over the survey period, densities increased to maximum numbers of about 27 ind. 10 m⁻² in mid-April. In the following week, density rapidly decreased due to mortality and migration into deeper waters. The mortality was attributed mainly to predation by brown shrimp (C. crangon) and to a lesser extent by the shore crab (Carcinus maenas). The mean size of 0-group plaice increased from 19 mm in mid-April to 58 mm in July. Growth of juvenile 0-group plaice is described by an exponential equation: total length (TL, mm) = 12.602 e^{0.022 (post-settlement age)}. Post-settlement growth rates, estimated by otolith microstructure analysis, were 0.38 mm d⁻¹ for plaice ≤30 mm and 0.61 mm d⁻¹ for plaice >30 mm. Settlement of juvenile brown shrimp started in mid-April, peaked in early June (93 ind. 10 m⁻²) and continued with fluctuating intensity throughout the summer. Growth rate of juvenile C. crangon, estimated after the settlement peak, was 0.163 mm d⁻¹. Growth conditions of juvenile plaice and C. crangon were analysed by comparing estimated growth in the field with predicted maximum growth according to temperature-growth rate models from experimental studies of growth with unlimited food supply. For plaice, the estimated growth rate was lower (plaice ≤30 mm) but similar (plaice >30 mm) to the predicted maximum growth suggesting a food limitation only for newly settled individual. The observed increase in mean length of juvenile C. crangon was lower than the maximum possible growth. The function of the intertidal zone in the early juvenile stages of marine species is discussed.     

The Manila clam population in Arcachon Bay (SW France): Can it be kept sustainable?

The venerid clam Ruditapes philippinarum is the most prominent suspension-feeding bivalve inhabiting muddy intertidal seagrass beds in Arcachon Bay (SW France). It is exploited by fishermen, and Arcachon Bay ranks number one in France in terms of production and total biomass of this species. Previous studies revealed a decrease in the standing stock of R. philippinarum since 2003 and unbalanced length–frequency distributions with a lack of juveniles and of adults > 40 mm. Consequently, the population dynamics of this bivalve were studied at four intertidal sites and one oceanic site in Arcachon Bay. As clam size structure did not allow classical dynamics computations, field monitoring was coupled with field experiments (tagging–recapture) over two years. Monitoring of condition index and gonadal maturation stages highlighted a high variability in spawning number and intensity between sites. Recruitment events in the exploited area varied spatially but with uniformly low values. Von Bertalanffy Growth Function (VBGF) parameters (K, L_∞) were determined using Appeldoorn and ELEFAN methods. In the exploited sites in the inner lagoon, K was relatively high (mean = 0.72 yr^? 1) but L_∞ was low (mean = 41.1 mm) resulting in a moderate growth performance index (Φ′ = 2.99). Growth parameters were not correlated with immersion time and L_∞ was different between sites. Comparison of mortality coefficients (Z) between cage experiments and field monitoring suggested that fishing accounts for 65–75% of total adult mortality. Low recruitment, a low growth rate and a normal mortality rate led to low somatic production (4.1 and 8.7 g Shell-Free Dry Weight (SFDW) m^? 2 yr^? 1) and an annual P/B ratio from 0.44 to 0.92 yr^? 1. Under current conditions, the possibility of a sustainable population in Arcachon Bay will strongly depend on recruitment success and fishing management.     

Effects of tributyltin on salmon interrenal CYP11β, steroidogenic factor-1 and glucocorticoid receptor transcripts in the presence and absence of second messenger activator,forskolin

The mechanisms by which TBT produces modulations of the endocrine systems are not fully described. In this study, juvenile salmon were force-fed diet containing TBT (0: solvent control, 0.1, 1 and 10 mg/kg fish) for 72 h. Subsequently, fish exposed to solvent control and 10 mg/kg TBT were exposed to waterborne concentration of the adenyl cyclase stimulator forskolin (200 μg/L) for 2 and 4 h. Tissue and blood were sampled from individual fish (n = 6). Gene expression patterns of CYP11β, steroidogenic factor-1 (SF-1), and glucocorticoid receptor (GlucR) were determined by qPCR. TBT generally decreased mRNA levels of CYP11β, GlucR and SF-1, compared to the solvent control and these effects were differentially modulated by the presence of forskolin. This study suggests that TBT may exert broader endocrine disrupting effects through possible modulation of cAMP/PKA second messenger systems.     

Actinian dominated intertidal mudflats: A new case of an extraordinary rare phenomenon from Southern Chile

Generally, estuarine intertidal mudflats constitute important nurseries for fish and foraging grounds for coastal birds by providing a plenitude of mollusks, worms, and crustaceans as prey, which in turn mostly feed on suspended and benthic microalgae, bacteria, and detritus. Despite the high productivity of such habitats, pronounced variability in both salinity and temperature results typically in low diversity. The only sea anemone reported from estuarine mud is the edwardsiid Nematostella vectensis Stephenson, 1935. It occurs widely in the northern hemisphere, and occasionally in extremely high density. Here we document another sea anemone from estuarine mud and muddy sand found in Southern Chile which has similar ecological attributes. Taxonomic confusion has impeded the reporting on this small but prominent member in a macrozoobenthic assemblage, the brooding Anthopleura hermaphroditica (Carlgren, 1899; Anthozoa: Actiniidae). It differs from N. vectensis by the presence of symbiotic algae. Average density under poly- to euhaline conditions in mud and muddy sand at around mid tide level was about 3 actinians per cm². An average abundance of 11,000 m^? 2, a biovolume of 487 cm³ m^? 2, and a biomass of 35.5 g dry organic weight m^? 2 were found in mud and muddy sand in two surveys 20 years apart. The mean fishing area of fully expanded individuals covers 42 ± 25 mm², corresponding to a circular area with a diameter of 7.3 ± 5.7 mm. Preliminary experiments indicate that associated benthos may be relegated to life below surface by the net of tentacles above the sediment. As no predators on A. hermaphroditica could be found on the mudflat, the success of this mixotrophic sea anemone may entail a trophic dead end.     

Molluscan assemblages of seagrass-covered and bare intertidal flats on the Banc d'Arguin,Mauritania, in relation to characteristics of sediment and organic matter

The Banc d'Arguin, a non-estuarine area of shallows and intertidal flats off the tropical Saharan coast of Mauritania, is characterised by extensive intertidal and subtidal seagrass beds. We examined the characteristics of intertidal seagrass (Zostera noltii) meadows and bare areas in terms of the presence and abundance of molluscs (gastropods and bivalves). To explain observed differences between molluscan assemblages in seagrass and bare patches, some aspects of the feeding habitat (top-5 mm of the sediment) and of food (organic materials) of molluscs were examined. The novelty of this study is that phytopigments were measured and identified to assess source and level of decay (freshness) of organic material in the sediment and to study their importance as an explanatory variable for the distribution of molluscs. Over an area of 36 km² of intertidal flats, at 12 sites, paired comparisons were made between seagrass-covered and nearby bare patches. Within seagrass meadows, dry mass of living seagrass was large and amounted to 180 ±10 g AFDM m^− 2 (range 75–240). Containing twice the amount of silt per unit dry sediment mass, seagrass sediments were muddier than bare areas; the relative amount of organic material was also larger. The total number of species of bivalves and gastropods amounted to 27, 14 of which were found only in seagrass areas, 4 only in bare and 9 in both types of habitat. Among the three numerically most abundant species, the bivalves Anadara senilis, Dosinia hepatica and Loripes lacteus, the first was numerically most abundant in bare and the other two in seagrass-covered areas. Bare intertidal areas had greater mean total biomass of molluscs (80.5 g AFDM m^− 2) than seagrass meadows (30.0 g AFDM m^− 2). In both habitats, the bulk of the biomass was made up by A. senilis. Excluding this species, bare mudflats contained on average only 3.1 g AFDM m^− 2 and seagrass meadows 6.9 g AFDM m^− 2. As compared to previous surveys in 1980–1986, the biomass of A. senilis had increased almost 10-fold and D. hepatica, previously found in very small numbers, had become the most numerous species. However, the total biomass excluding that of A. senilis was similar. Concentrations of phytopigments were similar to those observed at temperate mudflats, indicating that the Banc d'Arguin might not be as oligotrophic as previously thought. Per unit of dry sediment mass, smaller amounts of phytopigments were found in bare than in seagrass areas. Per unit of dry organic material, bare sediments contained most (fresh) phytopigments. This suggests that in seagrass-covered meadows the organic material is more degraded than in bare sediments. Overall, the composition of phytopigments, quite surprisingly, indicated a benthic-diatom-dominated trophic system. Multivariate statistics revealed that patterns of zoobenthic assemblages were correlated with patterns of a combination of four environmental parameters: grain size of the sediment, amount of fresh phytopigments and amounts of leaves and roots of seagrass.     

Microzooplankton grazing and selective feeding during bloom periods in the Tolo Harbour area as revealed by HPLC pigment analysis

Dilution experiments were conducted to investigate microzooplankton grazing impact on phytoplankton of different taxonomic groups and size fractions (< 5, 5–20, 20–200 μm) during spring and summer bloom periods at two different sites (inner Tolo Harbour and Tolo Channel) in the Tolo Harbour area, the northeastern coastal area of Hong Kong. Experiments combined with HPLC pigment analysis in three phytoplankton size fractions measured pigment and size specific phytoplankton growth rates and microzooplankton grazing rates. Pigment-specific phytoplankton growth rates ranged between 0.08 and 3.53 d^− 1, while specific grazing rates of microzooplankton ranged between 0.07 and 2.82 d^− 1. Highest specific rates of phytoplankton growth and microzooplankton grazing were both measured in fucoxanthin in 5–20 μm size fraction in inner Tolo Harbour in summer, which coincided with the occurrence of diatom bloom. Results showed significant correlations between phytoplankton growth and microzooplankton grazing rates. Microzooplankton placed high grazing pressure on phytoplankton community. High microzooplankton grazing impact on alloxanthin (2.63–5.13) suggested strong selection toward cryptophytes. Our results provided no evidence for size selective grazing on phytoplankton by microzooplankton.     

Commercially-cultured oysters (Crassostrea gigas) exert top-down control on intertidal pelagic resources in Willapa Bay,Washington, USA

The capacity of filter feeders to reduce seston and phytoplankton concentrations in the water column has important implications for restoration and management of coastal ecosystems. We directly measured changes in chlorophyll a concentration on commercially stocked intertidal oyster beds (Crassostrea gigas) in Willapa Bay, Washington, USA by recording water properties near small drifters as they tracked parcels of water across tide flats. Chlorophyll declined 9.6% per half hour in water passing on-bottom adult oysters and 41% for longline adult oysters, whereas chlorophyll concentrations increased as water flowed across tide flats without adult oysters. Field filtration rates, which were fit to exponential declines in chlorophyll and accounted for oyster density and water depth, averaged 0.35 L g^− 1 h^− 1 (shucked dry weight) for on-bottom aquaculture and 0.73 L g^− 1 h^− 1 for longline culture, compared to values of 2.5–12 L g^− 1 h^− 1 reported from laboratory studies of C. gigas. Field filtration rates may be lower than laboratory rates due to unfavorable field conditions (e.g., low initial chlorophyll concentrations) or masked by resuspension of benthic microalgae. In addition to distinctions among on-bottom, longline, and no-oyster habitats, Akaike's Information Criterion analysis showed temperature, initial chlorophyll concentration, and depth related to chlorophyll decline. This research corroborates mathematical models suggesting that benthic suspension feeders are exerting top-down control of pelagic production in this estuary, with strong patterns in chlorophyll emerging across extensive tideflats populated by C. gigas despite low field filtration rates.     

Growth increments and stable isotope variation in shells of the deep-sea hydrothermal vent bivalve mollusk Bathymodiolus brevior from the North Fiji Basin,Pacific Ocean

Bathymodiolus brevior [von Cosel, R., Métivier, B., Hashimoto, J., 1994. Three new species of Bathymodiolus (Bivalvia: Mytilidae) from hydrothermal vents in the Lau Basin and the North Fiji Basin, western Pacific, and the Snake Pit Area, mid-Atlantic ridge. Veliger 37, 374–392] a bivalve mollusk living at deep-sea hydrothermal vents, exhibits daily microgrowth structures in its shell. This interpretation is substantiated by various lines of evidence: (1) similar shell portions of contemporaneous specimens from the same locality contain almost the same number of microincrements; (2) the number of microincrements coincides with the expected number of days in which shell portions of Bathymodiolus spp. form; (3) the width of such microincrements compares well with daily growth rates estimated for the close relative B. thermophilus [Kenk, V.C., Wilson, B.R., 1985. A new mussel (Bivalvia, Mytilidae) from hydrothermal vents in the Galapagos rift-zone. Malacologia 26, 253–271]; (4) different specimens from the same site show similar microgrowth curves. In addition, we found support for tide-controlled shell growth. Daily shell growth rates fluctuate on a fortnightly basis. Some shell portions also revealed the typical tide-controlled microgrowth pattern commonly observed in intertidal bivalves. Based on the analyses of lunar daily growth increments, a growth curve for B. brevior was computed: X_t=14 cm−(14–0.04 cm) e^−0.26t. This curve enables estimation of ontogenetic age from shell length. According to this equation, B. brevior reaches its maximum shell length of 14 cm at about age 18. Shell isotope analyses suggest that some major shell growth interruptions or retardations are related to extremely active hydrothermal venting activity. However, shell growth also stopped during periods of low venting implying physiological controls on shell formation. Results of the present study demonstrate that shells of B. brevior provide calendars and environmental data loggers that can complement or partly substitute for long-term observations of venting systems.     

Acoustic discrimination of two zooplankton species (mysid) at 38 and 120 kHz

Using bifrequency sonar (38 kHz, 120 kHz) directed towards the open sea from the inside of a submarine cave, two species of Mysidacea (Crustacea), similar in shape but not in size, and with different patterns of behaviour, were observed simultaneously and discriminated, and their biomass was estimated during their migration. The first species, Hemimysis speluncola (<1 cm length), lives in the submarine cave, forming a distinct community that migrates horizontally. The second species, Siriella jaltensis (>1 cm length), lives in the open sea and migrates vertically. These species are both detected clearly at 120 kHz, but only the larger one, Siriella jaltensis, is detected at 38 kHz. This distinction allows one to determine the size limits of planktonic objects detected at these frequencies, i.e. 3 mm at 120 kHz and 10 mm at 38 kHz, corresponding to one quarter of the wavelength. The target strength (TS) of each species was calculated from the field data and compared to results calculated from three models. As the volume of the cave occupied by the Hemimysis population is about 300 m³, and the density of the swarm is 36,000 individuals/m³, the number of individuals in the cave is estimated to be around 10 million (or 24 kg). The density of the open-water population of Siriella is estimated to be 13 individuals/m³.     

Home range and diel behavior of the ballan wrasse,Labrus bergylta,determined by acoustic telemetry

Effective fisheries management needs to consider spatial behavior in addition to more traditional aspects of population dynamics. Acoustic telemetry has been extensively used to provide information on fish movements over different temporal and spatial scales. Here, we used a fixed-receiver array to examine the movement patterns of Labrus bergylta Ascanius 1767, a species highly targeted by the artisanal fleet of Galicia, NW Spain. Data from 25 individuals was assessed for a period of 71 days between September and November 2011 in the Galician Atlantic Islands Maritime-Terrestrial National Park. Fish were present within the monitored area more than 92% of the monitored time. The estimated size of individual home ranges, i.e. the area where fish spent most of their time, was small. The total minimum convex polygons area based on all the estimated positions was 0.133 ± 0.072 km², whereas the home range size estimated using a 95% kernel distribution of the estimated positions was 0.091 ± 0.031 km². The core area (50% kernel) was 0.019 ± 0.006 km². L. bergylta exhibited different patterns of movement in the day versus the night, with 92% of the fish detected more frequently and traveling longer distances during the daytime. In addition, 76% of the fish displayed a larger home range during the day versus during the night. The linearity index was less than 0.005 for all fish suggesting random movements but within a relatively small area, and the volume of intersection index between consecutive daily home ranges was 0.75 ± 0.13, suggesting high site fidelity. The small home range and the sedentary behavior of L. bergylta highlight the potential use of small MPAs as a management tool to ensure a sustainable fishery for this important species.     

Isotopic and elemental indicators of nutrient sources and status of coastal habitats in the Caribbean Sea,Yucatan Peninsula,Mexico

Nutrient inputs associated with coastal population growth threaten the integrity of coastal ecosystems around the globe. In order to assess the threat posed by rapid growth in tourism, we analyzed the nutrient concentrations as well as the δ¹⁵N of NO₃⁻ and macrophytes to detect wastewater nitrogen (N) at 6 locations along a groundwater-dominated coastal seagrass bed on the Caribbean coast of Mexico. We predicted that locations with greater coastal development would have higher concentrations of dissolved inorganic nitrogen (DIN) and phosphorus (P), as well as δ¹⁵N of NO₃⁻, reflecting wastewater sources of N. However, concentrations of NO₃⁻ were not significantly different between developed (3.3 ± 5.3 μM NO₃⁻) and undeveloped (1.1 ± 0.7 μM) marine embayments. The most important control on DIN concentration appeared to be mixing of fresh and salt water, with DIN concentrations negatively correlated with salinity. The δ¹⁵N of NO₃⁻ was elevated at an inland pond (7.0 ± 0.42‰) and a hydrologically-connected tide pool (7.6 ± 0.57‰) approximately 1 km downstream of the pond. The elevated δ¹⁵N of NO₃⁻ at the pond was paralleled by high δ¹⁵N values of Cladophora sp., a ubiquitous green alga (10 ± 1‰). We hypothesize that inputs of nitrogen rich (NO₃⁻ > 30 μM) groundwater, characterized by ¹⁵N enriched signatures, flow through localized submarine groundwater discharges (SGD) and contribute to the elevated δ¹⁵N signatures observed in many benthic macrophytes. However, changes in nitrogen concentrations and isotope values over the salinity gradient suggest that other processes (e.g. denitrification) could also be contributing to the ¹⁵N enrichments observed in primary producers. More measurements are needed to determine the relative importance of nitrogen transformation processes as a source of ¹⁵N to groundwaters; however, it is clear that continued inputs of anthropogenic N via SGD have the potential to severely impact ecologically and economically valuable seagrass meadows and coral reefs along the Caribbean coast of Mexico.     

A re-appraisal of the total biomass and annual production of Antarctic krill

Despite much research on Euphausia superba, estimates of their total biomass and production are still very uncertain. Recently, circumpolar krill databases, combined with growth models and revisions in acoustics have made it possible to refine previous estimates. Net-based databases of density and length frequency (KRILLBASE) yield a summer distributional range of ～19×10⁶ km² and a mean total abundance of 8×10¹⁴ post-larvae with biomass of 379 million tonnes (Mt). These values are based on a standardised net sampling method but they average over the period 1926–2004, during which krill abundance has fluctuated. To estimate krill biomass at the end of last century we combined the KRILLBASE map of relative krill density around Antarctica with an acoustics-derived biomass estimate of 37.3 Mt derived for the Scotia Sea area in 2000 by the Commission for the Conservation of Antarctic Marine Living Resources (CCAMLR). Thus the CCAMLR 2000 survey area contains 28% of the total stock, with total biomass of ～133 Mt in January–February 2000. Gross postlarval production is estimated conservatively at 342–536 Mt yr^?1, based on three independent methods. These are high values, within the upper range of recent estimates, but consistent with the concept of high energy throughput for a species of this size. The similarity between the three production estimates reflects a broad agreement between the three growth models used, plus the fact that, for a given population size, production is relatively insensitive to the size distribution of krill at the start of the growth season. These production values lie within the envelope of what can be supported from the Southern Ocean primary production system and what is required to support an estimated predator consumption of 128–470 Mt yr^?1. Given the range of recent acoustics estimates, plus the need for precautionary management of the developing krill fishery, our net-based data provide an alternative estimate of total krill biomass.     

Kinetic study reveals weak Fe-binding ligand,which affects the solubility of Fe in the Scheldt estuary

The chemistry of dissolved Fe(III) was studied in the Scheldt estuary (The Netherlands). Two discrete size fractions of the dissolved bulk (< 0.2 μm and < 1 kDa) were considered at three salinities (S = 26, 10 and 0.3).Within the upper estuary, where fresh river water meets seawater, the dissolved Fe concentration decreases steeply with increasing salinity, for the fraction < 0.2 μm from 536 nM at S = 0.3 to 104 nM at S = 10 and for the fraction < 1 kDa from 102 nM to 36 nM Fe. Further downstream, in the middle and lower estuary, this decrease in the Fe concentration continues, but is far less pronounced. For all samples, the traditionally recognised dissolved strong organic Fe-binding ligand concentrations are lower than the dissolved Fe concentrations.Characteristics of dissolved Fe-binding ligands were determined by observing kinetic interactions with adsorptive cathodic stripping voltammetry. From these kinetic experiments we concluded that apart from the well-known strong Fe-binding organic ligands (L, logK′ = 19–22) also weak Fe-binding ligands (P) existed with an α value (binding potential = K′ · [P]) varying between 10^11.1 and 10^11.9. The presence of this relatively weak ligand explained the high concentrations of labile Fe present in both size fractions in the estuary. This weak ligand can retard or prevent a direct precipitation after an extra input of Fe.The dissociation rate constants of the weak ligand varied between 0.5 × 10^− 4 and 4.3 × 10^− 4 s^− 1. The rate constants of the strong organic ligand varied between k_d = 1.5 × 10^− 3–17 × 10^− 2 s^− 1 and k_f = 2.2 × 10⁸–2.7 × 10⁹ M^− 1 s^− 1. The dissociation rate constant of freshly amorphous Fe-hydroxide was found to be between 4.3 × 10^− 4 and 3.7 × 10^− 3 s^− 1, more labile or equal to the values found by Rose and Waite [Rose, A.L., Waite, T.D., 2003a. Kinetics of hydrolysis and precipitation of ferric iron in seawater. Environ. Sci. Technol., 37, 3897–3903.] for freshly precipitated Fe in seawater.Kinetic rate constants of Fe with the ligand TAC (2-(2-Thiazolylazo)-p-cresol) were also determined. The formation rate constant of Fe(TAC)₂ varied between 0.1 × 10⁸ and 3.6 × 10⁸ M^− 1 s^− 1, the dissociation rate constant between 0.2 × 10^− 5 and 17 × 10^− 5 s^− 1 for both S = 26 and S = 10. The conditional stability constant of Fe(TAC)₂ (β_Fe(TAC)2′) varied between 22 and 23.4 for S = 10 and S = 26 more or less equal to that known from the literature (logβ_Fe(TAC)2′ = 22.4; [Croot, P.L., Johansson, M., 2000. Determination of iron speciation by cathodic stripping voltammetry in seawater using the competing ligand 2-(2-Thiazolylazo)-p-cresol (TAC). Electroanalysis, 12, 565–576.]). However, at S = 0.3 the logβ_Fe(TAC)2′ was 25.3, three orders of magnitude higher. Apparently the application of TAC to samples of low salinity can only be done when the correct β_Fe(TAC)2′ is known.     

Force and flow characteristics of a circular cylinder with uniform surface roughness at subcritical Reynolds numbers

The main purpose of this study is to establish a better understanding of the relationship between drag reduction and surface roughness. Experiments were conducted to measure the force and flow characteristics of a circular cylinder with different types of artificial surface roughness over the range 6 × 10³ < Re < 8 × 10⁴ (Re is based on the cylinder diameter D). The roughness cylinder was formed by covering the exterior surface of the cylinder with uniformly distributed (1) sandpaper, (2) netting, and (3) dimples. The roughness coefficient ranged from k/D = 0.0028 to 0.025 (k is the roughness height). A detailed quantitative measurement of the flow field around the cylinder using Particle Imaging Velocimetry (PIV) was carried out. The hydrodynamic force coefficients (drag and lift) of the rough cylinders are compared against those of a smooth cylinder measured under the same flow conditions. It is found that certain configuration of surface roughness significantly reduces the mean drag coefficient of the cylinder, particularly at large Reynolds numbers. In addition, the root-mean-square (r.m.s.) lift coefficient of the rough cylinders is considerably lower than that of a smooth cylinder.     

Elemental and stable isotope composition of Zostera noltii (Horneman) leaves during the early phases of decay in a temperate mesotidal lagoon

The aim of this study was to assess the changes in the elemental and stable isotope composition of Zostera noltii leaves during the early phases of decay. The litter biomass, the C, N and S elemental contents, the C:N ratios and the δ¹³C, δ¹⁵N and δ³⁴S values were monitored in a litterbag experiment for 60 days at Ria Formosa lagoon, southern Portugal in two different field conditions, permanently submerged in a salt marsh pond and at high intertidal. The elemental and stable isotope composition of both attached leaves and leaf wrack of Z. noltii was also determined. The overall decay rate of Z. noltii leaf material throughout the whole experimental period was k = 0.016 ± 0.001 d⁻¹. Even though the biomass loss of the Z. noltii leaves after 30 days was about 25% higher within the pond than at the high intertidal, at the end of the experiment there were no significant differences between sites. The decay of the C and N content was of the same magnitude and thus the C:N molar ratio did not vary significantly in the experiment. The elemental content of the leaf wrack was in the range of the element content of leaf litter after 30–60 days of incubation. Contrary to other vascular plants rich in lignin, which degrades slowly, and thus forces the decrease of the δ¹³C values during decay, the δ¹³C values of Z. noltii leaves did not vary significantly over time or between incubation sites. The δ¹⁵N values of leaves did not increase as has been reported for vascular plants with high C:N ratio. This suggests that during the early phase of the Z. noltii decomposition the community of decomposers relied mostly on the endogenous nitrogen of the plants, not needing to immobilize exogenous N. Stable isotope studies to assess the contribution of this species to the food web can rely on the natural δ¹³C and δ¹⁵N abundances of living tissues without any correction to account for decomposition. The analysis of the δ³⁴S values of Z. noltii detritus was not useful probably due to the contamination of the samples with pyrite, which has a depleted δ³⁴S signal.     

Spatial distributions of dimethylsulfide in the South China Sea

The concentration of dimethylsulfide (DMS) and supporting parameters were determined in surface seawater and vertical profiles at 26 stations in the South China Sea. The concentrations of DMS in surface seawater ranged from 61 to 148 ng S/l, with a mean of 82 ng S/l. High concentrations of DMS were found in the productive regions. The vertical profiles of DMS were characterized by a maximum at depths typically between 20 and 75 m. The concentrations of DMS were correlated with the levels of chlorophyll a both in the surface seawater and in the vertical distribution. The concentrations of DMS were higher than expected for this chlorophyll-poor tropical sea, as indicated by markedly high DMS (ng S/l)/chlorophyll a (μg/l) ratios ranging from 315 to 3524 with a mean of 1768 for all the surface seawater samples. DMS concentration was significantly correlated with seawater temperature and dissolved oxygen, but it showed an inverse relationship to nutrients (including nitrate, phosphate and silicate). On the basis of sea surface concentrations of DMS and gas exchange calculations, the mean flux of DMS from the South China Sea to the atmosphere was estimated to be 5.5 μmol m⁻² d⁻¹.     

The copepod Tigriopus japonicus genomic DNA information (574 Mb) and molecular anatomy

The intertidal copepod, Tigriopus japonicus, has been recognized as a promising model species for marine environmental genomics. To obtain extensive genomic DNA sequences from this species, we sequenced genomic DNA from adult copepods using genomic sequencers GS-FLX and GS-FLX-Titanium and attained 1,914,995 reads (average read length 299.8 bp) including 574.2 Mb of genomic DNA information. After subjecting them to assembly, we acquired 193,642 contigs (total contigs length 129.7 Mb), and finally were able to obtain 10,894 unigenes (E-value > 0.1; length > 200 bp) containing 33,081,455 bp after a nonredundant (NR) blast search. In this paper, we summarize the genomic DNA sequences of T. japonicus and discuss its potential use in environmental genomics and ecotoxicological studies for uncovering mechanisms of environmental stresses and chemical toxicities to marine crustaceans.     

Compositional and fluorescence characteristics of the giant diatom Ethmodiscus along a 3000 km transect (28°N) in the central North Pacific gyre

The giant diatom Ethmodiscus was examined along an east–west transect at 28–30°N during 2002 and 2003 to determine if abundance, chemical composition or physiological status of this largest of diatoms varied on the scale of 100's–1000's of km in North Pacific gyre. Abundance ranged from <0.1–>2.0 cells m⁻³ and supported the notion of an abundance mosaic reported previously. However, there was only minimal support for the relationship between abundance and nutrient concentration at 125 m reported previously. Cellular chlorophyll varied little along the transect (7.3–10.9 ng chl cell⁻¹) except at the westernmost station. Cellular N and P quotas co-varied 3–4.5 fold (mean=50.8±3.7 and 3.7±0.8 nmol N and P cell⁻¹) and yielded N:P ratios that closely clustered around the Redfield ratio (average=14.6±1.1). Only low levels of chlorophyll-normalized alkaline phosphatase (APase) activity were observed (0.4–2.5 nmol P μg chl⁻¹ h⁻¹) with APase activity lower than that in either the bulk water, or co-occurring Trichodesmium spp. and Pyrocystis noctiluca. The active fluorescence parameter F_v:F_m, a property sensitive to Fe stress, was uniformly high at all stations (average=0.73±0.04 for 2003, and 0.69±0.05 for 2002), indicating sufficient Fe for optimum photosynthetic competence. These results contrasted sharply with results from Rhizosolenia mats reported along the same transect where there was a significant decline westward in F_v:F_m. Both ferredoxin (Fd) and flavodoxin accumulated in cells of Ethmodiscus, resulting in Fd Index values of<0.6. Iron cell quotas ranged from 0.7–5.1 pmol Fe cell⁻¹. When normalized to cytoplasmic volume, the Fe μm⁻³ was comparable to that of Escherichia coli. We note that the disproportionate contribution of the vacuole (with its high organic content) to total volume typical of large diatoms is a potentially significant source of error in Fe:C ratios and suggest that Fe should be normalized to cytoplasmic volume whenever possible to permit valid intercomparisons between studies. The composition, F_v:F_m data and Fe:C ratio suggest a relatively uniform population experiencing little N, P or Fe stress. The uncoupling of the Fd Index from these measures is consistent with previous findings showing that the expression of flavodoxin can be characterized as an early stress response and that its accumulation is not necessarily correlated with physiological deficit. Ethmodiscus appears to be well adapted to some of the most oligotrophic waters in the ocean. Because it is an important sedimentary marker, the biology of living Ethmodiscus provides insights into the source of extensive Ethmodiscus oozes. Mass sedimentation after frontal accumulation has been suggested as a source for these oozes. Our data contain no evidence that the flux is linked directly to Fe, N or P stress.     

Contrasting life-histories,secondary production,and trophic structure of Peracarid assemblages of the bathyal suprabenthos from the Bay of Biscay (NE Atlantic) and the Catalan Sea (NW Mediterranean)

The life-histories and the secondary production of four dominant peracarid crustaceans (the mysids Boreomysis arctica and Parapseudomma calloplura, the amphipod Rhachotropis caeca, and the isopod Ilyarachna longicornis) in bathyal depths of the Bay of Biscay (NE Atlantic; between 383 and 420 m) and the Catalan Sea (Northwestern Mediterranean; between 389 and 1355 m) were established. Both the Atlantic and the Mediterranean populations of the major part of the target-species had two generations/year with mean cohort-production intervals (CPI) ranging from 5.5 mo for Ilyarachna longicornis to 6.3 mo for Parapseudomma calloplura. The Hynes method showed secondary production to vary in the Bay of Biscay between 0.113 mg DW m⁻² yr⁻¹ for I. longirostris and 3.069 mg DW m⁻² yr⁻¹ for P. calloplura, with P/B ratios between 4.57 (I. longirostris) and 7.93 (Boreomysis arctica). In the Catalan Sea, production varied between 0.286 mg DW m⁻² yr⁻¹ for I. longirostris and 1.096 mg DW m⁻² yr⁻¹ for P. calloplura, with P/B between 5.72 (I. longirostris) and 6.66 (P. calloplura). Application of two different empiric models to the whole peracarid assemblage gave similar levels of secondary production in both study areas (between 29.26 and 32.14 mgDWm⁻² yr⁻¹ in the Bay of Biscay; between 26.23 and 26.54 mg DW m⁻² yr⁻¹ in the Catalan Sea). From the analysis of gut contents of 22 species the dominant species in each study area were assigned to two basic trophic levels, detritus feeders and predators. Also, cumulative curves of dominance showed high diversity (low dominance) for peracarid assemblages distributed at mid-bathyal depths (524–693 m) both in the Bay of Biscay off Arcachon and in the Catalan Sea off Barcelona. We also discuss and compare, both within and between areas, how environmental features may explain the observed diversity patterns, the trophic structure, and the production results obtained for the suprabenthos assemblages.     

The relationship between dissolved hydrogen and nitrogen fixation in ocean waters

Fixed nitrogen is a key nutrient involved in regulating global marine productivity and hence the global oceanic carbon cycle. Oceanic nitrogen (N₂) fixation is estimated to supply 8×10¹² moles N y^?1 to the ocean, approximately equal to current riverine and the atmospheric inputs of fixed N, and between 50 and 100% of current estimates of oceanic denitrification. However, the spatial and temporal variability of N₂ fixation remains uncertain, mostly because of the normal low resolution sampling for diazotroph distribution and fixation rates. It is well established that N₂ fixation, mediated by the enzyme nitrogenase, is a source of hydrogen (H₂), but the extent to which it leads to supersaturation of H₂ in oceanic waters is unresolved. Here, we present simultaneous measurements of upper ocean dissolved H₂ concentration (nmol L^?1), and rates of N₂ fixation (μmol N m^?3 d^?1), determined using ¹⁵N₂ tracer techniques (at 7 or 15 m), on a transect from Fiji to Hawaii. We find a significant correlation (r=0.98) between dissolved H₂ and rates of N₂ fixation, with the greatest supersaturation of H₂ and highest rates of N₂ fixation being observed in the subtropical gyres at the southern (～18°S) and northern (18°N) reaches of the transect. The lowest H₂ saturation and N₂ fixation were observed in the equatorial region between 8°S and 14°N. We propose that an empirical relationship between H₂ supersaturations and N₂ fixation measurements could be used to guide sampling for ¹⁵N fixation measurements or to aid the spatial interpolation of such measurements.