Export fluxes of biogenic matter in the presence and absence of seasonal sea ice cover in the Chukchi Sea

Drifting sediment traps were deployed at 9 stations in May-June (ice-covered conditions) and July-August (ice-free conditions) 2004 in the Chukchi Sea to investigate the variability in export fluxes of biogenic matter in the presence and absence of sea ice cover. Measurements of chlorophyll-a (Chl-a), particulate organic carbon (POC), particulate nitrogen (PN), phytoplankton, zooplankton fecal pellets, and the stable carbon isotope composition (δ¹³C) of the sinking material were performed along Barrow Canyon (BC) and a parallel shelf-to-basin transect from East Hanna Shoal (EHS) to the Canada Basin. POC export fluxes were similarly high in the presence (378±106 mg C m⁻² d⁻¹) and in the absence of ice cover (442±203 mg C m⁻² d⁻¹) at the BC stations, while fluxes were significantly higher in the absence (129±98 mg C m⁻² d⁻¹) than in the presence of ice cover (44±29 mg C m⁻² d⁻¹) at the EHS stations. The C/N ratios and δ¹³C values of sinking organic particles indicated that POC export fluxes on the Chukchi continental shelf were mostly composed of freshly produced labile material, except at the EHS stations under ice cover where the exported matter was mostly composed of refractory material probably advected into the EHS region. Chl-a fluxes were higher under ice cover than in ice-free water, however, relatively low daily loss rates of Chl-a and similar phytoplankton carbon fluxes in ice-covered and ice-free water suggest the retention of phytoplankton in the upper water column. An increase in fecal pellet carbon fluxes in ice-free water reflected higher grazing pressure in the absence of ice cover. Elevated daily loss rates of POC at the BC stations confirmed other indications that Barrow Canyon is an important area of carbon export to the basin and/or benthos. These results support the conclusion that there are large spatial and temporal variations in export fluxes of biogenic matter on the Chukchi continental shelf, although export fluxes may be similar in the presence and in the absence of ice cover in highly productive regions.     

Spatial variability in organic material sinking export in the Hudson Bay system,Canada, during fall

Spatial variations in the sinking export of organic material were assessed within the Hudson Bay system (i.e., Hudson Bay, Hudson Strait and Foxe Basin) during the second oceanographic expedition of ArcticNet, on board the CCGS Amundsen in early fall 2005. Sinking fluxes of particulate organic material were measured using short-term free-drifting particle interceptor traps deployed at 50, 100 and 150 m for 8–20 h at eight stations. Measurements of chlorophyll a (chl a), pheopigments (pheo), particulate organic carbon (POC), biogenic silica (BioSi), protists, fecal pellets and bacteria were performed on the collected material. In parallel, sea surface salinity and temperature were determined at 121 stations in the Hudson Bay system. Three hydrographic regions presenting different sedimentation patterns were identified based on average surface salinity and temperature. Hudson Strait was characterized by a marine signature, with high salinity (average=32.3) and low temperature (average=2.1 °C). Eastern Hudson Bay was strongly influenced by river runoff and showed the lowest average salinity (26.6) and highest average temperature (7.6 °C) of the three regions. Western Hudson Bay showed intermediate salinity (average=29.4) and temperature (average=4.4 °C). Sinking fluxes of total pigments (chl a+pheo: 3.37 mg m⁻² d⁻¹), diatom-associated carbon (19.8 mg m⁻² d⁻¹) and BioSi (50.2 mg m⁻² d⁻¹) at 50 m were highest in Hudson Strait. Eastern Hudson Bay showed higher sinking fluxes of total pigments (0.52 mg m⁻² d⁻¹), diatom-associated carbon (3.29 mg m⁻² d⁻¹) and BioSi (36.6 mg m⁻² d⁻¹) compared to western Hudson Bay (0.19, 0.05 and 7.76 mg m⁻² d⁻¹, respectively). POC sinking fluxes at 50 m were low and relatively uniform throughout the Hudson Bay system (50.0–76.8 mg C m⁻² d⁻¹), but spatial variations in the composition of the sinking organic material were observed. A large part (37–78%) of the total sinking POC was unidentifiable by microscopic observation and was qualified as amorphous detritus. Considering only the identifiable material, the major contributors to the POC sinking flux were intact protist cells in Hudson Strait (28%), fecal pellets in eastern Hudson Bay (52%) and bacteria in western Hudson Bay (17%). A significant depth-related attenuation of the POC sinking fluxes (average loss between 50 and 150 m=32%) and a significant increase in the BioSi:POC ratio (average increase between 50 and 150 m=76%) were observed in Hudson Strait and eastern Hudson Bay. For all other sinking fluxes and composition ratios, we found no statistically significant difference with depth. These results show that during fall, the sinking export of total POC from the euphotic zone remained fairly constant throughout the Hudson Bay system, whereas other components of the organic sinking material (e.g., chl a, BioSi, fecal pellets, protist cells) showed strong spatial variations.     

Seasonal contribution of living phytoplankton carbon to vertical fluxes in a coastal upwelling system (Ría de Vigo, NW Spain)

The aim of this study is to explore the contribution of living phytoplankton carbon to vertical fluxes in a coastal upwelling system as a key piece to understand the coupling between primary production in the photic layer and the transfer mechanisms of the organic material from the photic zone. Between April 2004 and January 2005, five campaigns were carried out in the Ría de Vigo (NW Iberian Peninsula) covering the most representative oceanographic conditions for this region. Measurements of particulate organic carbon (POC), chlorophyll-a (chl a), phaeopigments (phaeo), and identification of phytoplankton species were performed on the water column samples and on the organic material collected in sediment traps.The POC fluxes measured by the sediment traps presented no seasonal variation along the studied period ranging around a mean annual value of 1085±365 mg m⁻² d⁻¹, in the upper range of the previously reported values for other coastal systems. The fact that higher POC fluxes were registered during autumn and winter, when primary production rates were at their minimum levels points to a dominant contribution of organic carbon from resuspended sediments on the trap collected material. On the contrary, fluxes of living phytoplankton carbon (C_phyto) and chl a clearly presented a seasonal trend with maximum values during summer upwelling (546 mg m⁻² d⁻¹ and 22 mg chl a m⁻² d⁻¹, respectively) and minimum values during winter (22 mg m⁻² d⁻¹ and 0.1 mg chl a m⁻² d⁻¹, respectively). The contribution of C_phyto to the vertical flux of POC ranged between 2% and 49% in response to the pelagic phytoplankton community structure. Higher values of C_phyto fluxes were registered under upwelling conditions which favour the dominance of large chain-forming diatoms (Asterionellopsis glacialis and Detonula pumila) that were rapidly transferred to the sediments. By contrast, C_phyto fluxes decreased during the summer stratification associated with a pelagic phytoplankton community dominated by single-cell diatoms and flagellates. Minimal C_phyto fluxes were observed during the winter mixing conditions, when the presence of the benthic specie Paralia sulcata in the water column also points toward strong sediment resuspension.     

Carbon and nitrogen cycling in the Zhubi coral reef lagoon of the South China Sea as revealed by Po and Pb

The radionuclides ²¹⁰Po and ²¹⁰Pb were examined to trace the cycling of particulate organic carbon (POC) and particulate organic nitrogen (PON) in the Zhubi coral reef lagoon. The net export flux of POC to the open sea is 14 mgC m⁻² d⁻¹. However, the net exchange of PON has not yet been observed. On average, the vertical export fluxes in the lagoon of POC and PON, as derived from ²¹⁰Po/²¹⁰Pb disequilibria, are 43 mgC m⁻² d⁻¹ and 13.8 mgN m⁻² d⁻¹, respectively. The deficit of ²¹⁰Po relative to ²¹⁰Pb in particulate matter provides evidence for the degradation of particulate organic matter. According to the mass balance budgets, 310 mgC m⁻² d⁻¹ and 121 mgN m⁻² d⁻¹ were recycled into dissolved fractions. Based on a first-order kinetics model, the degradation rate constants of POC and PON are 0.28 and 0.30 m⁻¹, respectively. Thus, ²¹⁰Po and ²¹⁰Pb can quantify the cycling of carbon and nitrogen in this coral lagoon.     

Seasonal variation of microzooplankton (20–200 μm) and its possible implications on the vertical carbon flux in the western Bay of Bengal

Stratification (throughout the year) and low solar radiation (during monsoon periods) have caused low chlorophyll a and primary production (seasonal average 13–18 mg m⁻² and 242–265 mg C m⁻² d⁻¹, respectively) in the western Bay of Bengal (BoB). The microzooplankton (MZP) community of BoB was numerically dominated by heterotrophic dinoflagellates (HDS) followed by ciliates (CTS). The highest MZP abundance (average 665±226×10⁴ m⁻²), biomass (average 260±145 mg C m⁻²) and species diversity (Shannon weaver index 2.8±0.42 for CTS and 2.6±0.35 for HDS) have occurred during the spring intermonsoon (SIM). This might be due to high abundance of smaller phytoplankton in the western BoB during SIM as a consequence of intense stratification and nitrate limitation (nitracline at 60 m depth). The strong stratification during SIM was biologically evidenced by intense blooms of Trichodesmium erythraeum and frequent Synechococcus–HDS associations. The high abundance of smaller phytoplankton favors microbial food webs where photosynthetic carbon is channeled to higher trophic levels through MZP. This causes less efficient transfer of primary organic carbon to higher trophic levels than through the traditional food web. The microbial food web dominant in the western BoB during SIM might be responsible for the lowest mesozooplankton biomass observed (average 223 mg C m⁻²). The long residence time of the organic carbon in the surface waters due to the active herbivorous pathways of the microbial food web could be a causative factor for the low vertical flux of biogenic carbon during SIM.     

Pelagic production and respiration in the Gulf of Papua during May 2004

The metabolic balance between production and respiration in plankton communities of the Gulf of Papua was investigated in May 2004. Water samples taken at 19 stations were allocated to groups on the basis of physico-chemical characteristics. Oxygen consumption and production in flasks incubated in the dark and in the light was determined by micro-Winkler titration. Dark bottle respiration in samples influenced by the estuarine plume averaged 3.09±1.92 (SD) mmol O₂ m⁻³ d⁻¹ and production within surface light bottles averaged 7.63±3.36 (SD)  mmol O₂ m⁻³ d⁻¹. Corresponding values in stations more typical of the central Gulf of Papua were 1.68±1.30 (SD) mmol O₂ m⁻³ d⁻¹ and 1.08±2.25 (SD) mmol O₂ m⁻³ d⁻¹. Despite a shallow (<10 m) euphotic zone within the plume stations, phytoplankton production in the surface layers was sufficiently high to subsidise total water column respiration. Integrating production and respiration over the water column resulted in a calculation of net community production (NCP) of 626±504 (SD) mg C m⁻² d⁻¹, and community respiration (CR) of 712±492 mg C m⁻² d⁻¹ at the plume stations, with an average P:R ratio of 1.97. In the offshore group NCP was 157±450 (SD) mg C m⁻² d⁻¹ and CR was 1620±1576 mg C m⁻² d⁻¹. The average P:R ratio was 1.27. Three of the 7 stations allocated to the offshore group were net heterotrophic. In contrast to earlier studies in the area indicating that the Gulf of Papua waters is heterotrophic [Robertson, A.I., Dixon, P., Alongi, D.M., 1998. The influence of fluvial discharge on pelagic production in the Gulf of Papua, Northern Coral Sea. Estuarine, Coastal and Shelf Science 46, 319–331], our data indicate that in May 2004 the Gulf was in positive metabolic balance, but by only ∼120 mg C m⁻² d⁻¹. We conclude that waters of the Gulf of Papua under riverine influence are net autotrophic, but that within the central Gulf there is a fine metabolic balance alternating between autotrophy and heterotrophy.     

Organic biomarkers for tracing carbon cycling in the Gulf of Papua (Papua New Guinea)

Sediment traps were deployed in the Gulf of Papua in June–July 1997, to determine fluxes of organic matter and inorganic elements from the photic zone to deeper waters at the base of the continental slope and in the northern Coral Sea. Three stations, ranging from 900 to 1500 m depth, had “shallow” traps at 300 m below the water surface and “deep” traps set 100 m above the bottom. Infiltrex II water samplers collected particulate and dissolved organic matter from the Fly, Purari and Kikori rivers, and near-surface water from the shelf of the Gulf of Papua. Samples were analysed for molecular organic biomarkers to estimate the sources of organic carbon and its cycling processes.Dry weight fluxes from the shallow traps ranged from 115 to 181 mg m⁻² day⁻¹ and particulate organic carbon (POC) fluxes ranged from 1.2 to 1.9 mM OC m⁻² d⁻¹ with molar organic carbon to particulate nitrogen ratios (C/N) ranging from 6.0 to 6.5. Fluxes in deep traps were likely influenced by both early diagenesis and entrapment of resuspended shelf sediments. Dry weight fluxes in deep traps ranged from 106 to 574 mg m⁻² day⁻¹ and POC fluxes ranged from 0.6 to 1.5 mM OC m⁻² d⁻¹, with C/N ratios ranging from 8.5 to 10.8. ¹³C/¹²C ratios were −20.2‰ to −21.7‰ in all trap samples, indicating that most of the settling POC was “marine-derived”. Shallow traps had δ¹⁵N values of 6.3‰ to 7.2‰ while the values in deep traps were 4.9–5.0‰, indicating the N-rich near-surface OC was less degraded than that in the deep traps. The biogenic lipids consisted of hydrocarbon, sterol and fatty acid biomarkers indicative of marine zooplankton, phytoplankton and bacteria. Sterol markers for diatoms and dinoflagellates were abundant in the water samples. Highly branched isoprenoid alkenes, usually attributable to diatoms, were also detected in both water and shallow traps. Traces of C₂₆–C₃₄ n-alcohols indicative of land–plant biomarkers, were found in river water samples and in the shallow sediment traps. A large unresolved complex mixture (UCM) of hydrocarbons, and a uniform distribution of n-alkanes, indicative of petroleum hydrocarbons, were also detected in the traps. Hopane and sterane biomarkers detected in the trap oil were characteristic of a marine carbonate source, and the aromatic hydrocarbon composition distinguished at least two different oil signatures.We concluded that mass and POC fluxes were similar to those reported for other continental shelves and marginal oceans in tropical and subtropical regions. There was a dramatic decrease in POC as particles sank, due to zooplankton repackaging and photochemical and bacterial decomposition. Carbon isotopic and biomarker patterns showed most of the POC in the sediment traps was marine-sourced with only traces of terrestrial input. There was a significant flux of petroleum, which may signal the existence of natural petroleum seeps in this region.     

Variability in the annual cycle of vertical particulate organic carbon export on Arctic shelves: Contrasting the Laptev Sea,Northern Baffin Bay and the Beaufort Sea

The ongoing regression of sea ice cover is expected to significantly affect the fate of organic carbon over the Arctic continental shelves. Long-term moored sediment traps were deployed in 2005–2006 in the Beaufort Sea, Northern Baffin Bay and the Laptev Sea to compare the annual variability of POC fluxes and to evaluate the factors regulating the annual cycle of carbon export over these continental shelves. Annual POC fluxes at 200 m ranged from 1.6 to 5.9 g C m⁻² yr⁻¹ with the highest export in Northern Baffin Bay and the lowest export over the Mackenzie Shelf in the Beaufort Sea. Each annual cycle exhibited an increase in POC export a few weeks before, during, or immediately following sea ice melt, but showed different patterns over the remainder of the cycle. Enhanced primary production, discharge of the Lena River, and resuspension events contributed to periods of elevated POC export over the Laptev Sea slope. High POC fluxes in Northern Baffin Bay reflected periods of elevated primary production in the North Water polynya. In the Beaufort Sea sediment resuspension contributed to most of the large export events. Our results suggest that the outer shelf of the Laptev Sea will likely sustain the largest increase in POC export in the next few years due to the large reduction in ice cover and the possible increase in the Lena River discharge. The large differences in forcing among the regions investigated reinforce the importance of monitoring POC fluxes in the different oceanographic regimes that characterize the Arctic shelves to assess the response of the Arctic Ocean carbon cycle to interannual variability and climate change.     

Phytoplankton biomass and primary production responses to physico-chemical forcing across the northeastern New Zealand continental shelf

Phytoplankton biomass and primary production were monitored in the Hauraki Gulf and on the northeastern continental shelf, New Zealand - using ship surveys, moored instruments and satellite observations (1998-2001) - capturing variability across a range of space and time scales. A depth-integrated primary production model (DIM) was used to predict integrated productivity from surface parameters, enabling regional-specific estimates from satellite data. The shelf site was dominated by pico-phytoplankton, with low chlorophyll-a (<1 mg m⁻³) and annual production (136 g C m⁻² yr⁻¹). In contrast, the gulf contained a micro/nano-phytoplankton-dominated community, with relatively high chlorophyll-a (>1 mg m⁻³) and annual production (178 g C m⁻² yr⁻¹). Biomass and productivity responded to physico-chemical factors; a combination of light, critical mixing depths and/or nutrient limitation—particularly new nitrate-N. Relatively low biomass and production was observed during 1999. This coincided with inter-annual variability in the timing and extent of upwelling- and downwelling-favourable along-shelf wind-stress, influencing the fluxes of new nitrate-N to the shelf and gulf. Relationships with the Southern Oscillation Index are also discussed. Our multi-scaled sampling highlighted details associated with stratification and de-stratification events, and deep sub-surface chlorophyll-a not visible to satellite sensors. This study demonstrates the importance of multi-scaled sampling in gaining estimates of regional production and its responses to physico-chemical forcing.     

Benthic fluxes of dissolved inorganic carbon in the Tinto–Odiel system (SW of Spain)

The benthic fluxes (diffusive and with chambers) of dissolved inorganic carbon (DIC), dissolved oxygen (DO) and total alkalinity (TA) have been calculated in summertime in the estuary system formed by the mouths of the Tinto and Odiel rivers (SW of Spain). An increase of DIC in interstitial water with depth was found for all stations showing values of up to 28 mM at a depth of 5 cm. The diffusive fluxes of DIC and TA obtained ranging between 1.8–7.8 and 1.5–7.3 mmol m⁻² d⁻¹, respectively. These intervals are in agreement with those found for other coastal systems. Considering the plots of DIC vs. alkalinity (ΔDIC/ΔTA) in the first 30 cm of interstitial water, it was deduced that sulphate reduction and the oxidation of sulphides seem to have special relevance in the sediments of the stations studied. The benthic fluxes of inorganic carbon and DO measured by benthic chambers were variable, presenting elevated values (309–433 mmol DIC m⁻² d⁻¹ and 50–120 mmol DO m⁻² d⁻¹). The most elevated fluxes of DIC were seen at the stations with high anthropogenic influence (close to populated areas and industrial discharges). A great proportion of these fluxes are due to CaCO₃ dissolution processes, which constitute an estimated 49% of total DIC flux. DIC and DO benthic flux quotients were far in excess of unity, indicating the significance processes of anaerobic degradation of organic material at the stations studied.     

Seasonal variations and trophic ecology of microzooplankton in the southeastern Arabian Sea

The seasonal ecological response of microzooplankton in the southeastern Arabian Sea is presented. During the spring intermonsoon period, stratification and depletion of nitrate in the surface waters (nitracline was at 60 m depth) cause low integrated chlorophyll a (av. 19±11.3 mg m⁻²) and primary production (av. 164±91 mgC m⁻² d⁻¹). On the other hand, nutrient enrichment associated with coastal upwelling and river influx during the onset and peak summer monsoon resulted in high integrated chlorophyll a (av. 21±6 mg m⁻² and av. 29±21 mg m⁻², respectively) and primary production (av. 255±94 mgC m⁻² d⁻¹ and av. 335±278 mgC m⁻² d⁻¹, respectively). During all three periods, diazotropic cyanobacterium Trichodesmium erythraeum dominated in the nutrient depleted surface waters. A general increase in abundance of larger diatoms was evident in the surface waters of the inshore region during monsoon periods. The microzooplankton abundance was found to be significantly higher during the spring intermonsoon (av.241±113×10³ ind m⁻²) as compared to onset of summer monsoon (av. 105±89×10³ ind m⁻²) and peak summer monsoon (av.185±175×10³ ind m⁻²). Microzooplankton community during the spring intermonsoon was numerically dominated by ciliates while heterotrophic dinoflagellate was the dominant ones during the monsoon periods. The high abundance of ciliates during the spring intermonsoon could be attributed to the stratified environmental condition prevailed in the study area which favors high abundance of smaller phytoplankton and cyanobacteria, the most preferred food of ciliates. On the other hand, the dominance of heterotrophic dinoflagellates during the monsoon periods could be linked to their ability to graze larger diatoms which were abundant during the monsoon periods. The overall results show low abundance of microzooplankton in the eastern Arabian Sea during the monsoon periods mainly due to a decline in ciliates abundance. This decline during the monsoon periods could be the result of (a) low abundance of smaller phytoplankton and (b) high stock of mesozooplankton predators (av. 245 ml 100 m⁻³).     

Variation of particulate organic carbon and its relationship with bio-optical properties during a phytoplankton bloom in the Pearl River estuary

In this study, variations in the particulate organic carbon (POC) were monitored during a phytoplankton bloom event, and the corresponding changes in bio-optical properties were tracked at one station (114.29°E, 22.06°N) located in the Pearl River estuary. A greater than 10-fold increase in POC (112.29-1173.36 mg m⁻³) was observed during the bloom, with the chlorophyll a concentration (Chl-a) varying from 0.984 to 25.941 mg m⁻³. A power law function is used to describe the relationship between POC and Chl-a, and the POC:Chl-a ratio tends to change inversely with Chl-a. Phytoplankton carbon concentration is indirectly estimated using the conceptual model proposed by Sathyendranath et al. (2009), and this carbon is found to contribute 47.21% (±10.65%) to total POC. The estimated carbon-to-chlorophyll ratio of phytoplankton in diatom-dominated waters is found to be comparable with results reported in the literature. Empirical algorithms for determining the concentrations of Chl-a and POC were developed based on the relationships of these variables with the blue-to-green reflectance ratio. With these bio-optical models, the levels of particulate organic carbon and Chl-a could be predicted from the radiometric data measured by a marine optical buoy, which showed much more detailed information about the variability in biogeochemical parameters during this bloom event.     

Recent carbon and nitrogen uptake rates of phytoplankton in Bering Strait and the Chukchi Sea

Cruises to Bering Strait and the Chukchi Sea in US waters from late June in 2002 to early September in 2004 and the Russian–American Long-term Census of the Arctic (RUSALCA) research cruise in 2004 covered all major water masses and contributed to a better understanding of the regional physics, nutrient dynamics, and biological systems. The integrated concentration of the high nitrate pool in the central Chukchi Sea was greater in this study than in previous studies, although the highest nitrate concentration (∼22 μM) in the Anadyr Water mass passing through the western side of Bering Strait was consistent with prior observations. The chlorophyll-a concentrations near the western side of the Diomede Islands ranged from 200 to 400 mg chl-a m⁻² and the range in the central Chukchi Sea was 200–500 mg chl-a m⁻² for the 2002–2004 Alpha Helix (HX) cruises. Chlorophyll-a concentrations for the 2004 RUSALCA cruise were lower than those from previous studies. The mean annual primary production of phytoplankton from this study, using a ¹³C–¹⁵N dual-isotope technique, was 55 g C m⁻² for the whole Chukchi Sea and 145 g C m⁻² for the plume of Anadyr–Bering Shelf Water in the central Chukchi Sea. In contrast, the averages of annual total nitrogen production were 13.9 g N m⁻² (S.D.=±16.2 g N m⁻²) and 33.8 g N m⁻² (S.D.=±14.1 g N m⁻²) for the Chukchi Sea and the plume, respectively. These carbon and nitrogen production rates of phytoplankton were consistently two-or three-fold lower than those from previous studies. We suggest that the lower rates in this study, and consequently more unused nitrate in the water column, were caused by lower phytoplankton biomass in the Bering Strait and the Chukchi Sea. However, we do not know if the lower rate of production from this study is a general decreasing trend or simply temporal variations in the Chukchi Sea, since temporal and geographical variations are substantially large and presently unpredictable.     

The growth dynamics of Karenia brevis within discrete blooms on the West Florida Shelf

As part of the ECOHAB: Florida Program, we studied three large blooms of the harmful bloom forming dinoflagellate Karenia brevis. These blooms formed on the West Florida Shelf during Fall of 2000 off Panama City, and during Fall 2001 and Fall 2002 off the coastline between Tampa Bay and Charlotte Harbor. We suggest that these blooms represent two different stages of development, with the 2000 and 2001 blooms in an active growth or maintenance phase and the 2002 bloom in the early bloom initiation phase. Each bloom was highly productive with vertically integrated primary production values of 0.47–0.61, 0.39–1.33 and 0.65 g C m⁻² d⁻¹ for the 2000, 2001 and 2002 K. brevis blooms, respectively. Carbon specific growth rates were low during each of these blooms with values remaining fairly uniform with depth corresponding to generation times of 3–5 days. Nitrogen assimilation by K. brevis was highest during 2001 with values ranging from 0.15 to 2.14 μmol N L⁻¹ d⁻¹ and lower generally for 2000 and 2002 (0.01–0.64 and 0.66–0.76 μmol N L⁻¹ d⁻¹ for 2000 and 2002, respectively). The highest K. brevis cell densities occurred during the 2001 bloom and ranged from 400 to 800 cells mL⁻¹. Cell densities were lower for each of the 2000 and 2002 blooms relative to those for 2001 with densities ranging from 100 to 500 cells mL⁻¹. The 2000 and 2001 blooms were dominated by K. brevis in terms of its contribution to the total chlorophyll a (chl a) pool with K. brevis accounting generally for >70% of the observed chl a. For those populations that were dominated by K. brevis (e.g. 2000 and 2001), phytoplankton C biomass (C_p,0) constituted <30% of the total particulate organic carbon (POC). However, in 2002 when diatoms and K. brevis each contributed about the same to the total chl a, C_p,0 was >72% of the POC. The fraction of the total chl a that could be attributed to K. brevis was most highly correlated with POC, chl a and salinity. Nitrogen assimilation rate and primary production were highly correlated with a greater correlation coefficient than all other comparisons.     

Internal waves,baroclinic energy fluxes and mixing at the European shelf edge

The energy flux in internal waves generated at the Celtic Sea shelf break was estimated by (i) applying perturbation theory to a week-long dataset from a mooring at 200 m depth, and (ii) using a 2D non-hydrostatic circulation model over the shelf break. The dataset consisted of high resolution time-series of currents and vertical stratification together with two 25-h sets of vertical profiles of the dissipation of turbulent kinetic energy. The observations indicated an average energy flux of 139 W m⁻¹, travelling along the shelf break towards the northwest. The average energy flux across the shelf break at the mooring was only 8 W m⁻¹. However, the waves propagating onshelf transported up to 200 W m⁻¹, but they were only present 51% of the time. A comparison between the divergence of the baroclinic energy flux and observed dissipation within the seasonal thermocline at the mooring showed that the dissipation was at least one order of magnitude larger. Results from a 2D model along a transect perpendicular to the shelf break showed a time-averaged onshelf energy flux of 153–425 W m⁻¹, depending on the magnitude of the barotropic forcing. A divergence zone of the energy flux was found a few kilometre offshore of the location of the observations in the model results, and fluxes on the order of several kW m⁻¹ were present in the deep waters further offshelf from the divergence zone. The modelled fluxes exhibited qualitative agreements with the phase and hourly onshelf magnitudes of the observed energy fluxes. Both the observations and the model results show an intermittent onshelf energy flux of 100–200 W m⁻¹, but these waves could only propagate ∼20–30 km onshore before dissipating. This conclusion was supported by a 25-h dataset sampled some 180 km onto the shelf, where a weak wave energy flux was found going towards the shelf break. We therefore conclude that shelf break generated internal waves are unlikely to be the main source of energy for mixing on the inner part of the shelf.     

Air-sea CO2 fluxes in the southern Yellow Sea: An examination of the continental shelf pump hypothesis

The southern Yellow Sea (SYS), located to the north of the East China Sea (ECS), was considered part of the ECS when Tsunogai et al. (1999) proposed the “continental shelf pump” (CSP) hypothesis. However, the original CSP carbon dioxide (CO₂) uptake flux (2.9 mol C m⁻² yr⁻¹) appears to have been overestimated, primarily due to the differences between the SYS and the ECS in terms of their CO₂ system. In this paper, we estimated air-sea CO₂ fluxes in the SYS using the surface water partial pressure of CO₂ (pCO₂) measured in winter, spring, and summer, as well as that estimated in fall via the relationship of pCO₂ with salinity, temperature, and chlorophyll a. The results indicate that overall, the entire investigated area was a net source of atmospheric CO₂ during summer, winter, and fall, whereas it was a net sink during spring. Spatially, the nearshore area was almost a permanent CO₂ source, while the central SYS shifted from being a CO₂ sink in spring to a source in the other seasons of the year. Overall, the SYS is a net source of atmospheric CO₂ on an annual scale, releasing ∼7.38 Tg C (1 Tg=10¹² g) to the atmosphere annually. Thus, the updated CO₂ uptake flux in the combined SYS and ECS is reduced to ∼0.86 mol C m⁻² yr⁻¹. If this value is extrapolated globally following Tsunogai et al. (1999), the global continental shelf would be a sink of ∼0.29 Pg C yr⁻¹, instead of 1 Pg C yr⁻¹ (1 Pg=10¹⁵ g).The SYS as a net annual source of atmospheric CO₂ is in sharp contrast to most mid- and high-latitude continental shelves, which are CO₂ sinks. We argue that unlike the ECS and the North Sea where carbon on the shelf could be exported to the open ocean, the SYS lacks the physical conditions required by the CSP to transport carbon off the shelf effectively. The global validity of the CSP theory is thus questionable.     

Organic carbon and nutrient fluxes to the coastal zone from the Sepik River outflow

The Sepik River is a major contributor of water, sediment and associated organic loads to the coastal waters of northern New Guinea and the Bismarck Sea. We compare dissolved and particulate organic carbon data from September 1997 during an extremely dry El Nino year with those from 1996, 1999 and 2000 during La Nina wet season discharges. Estimated Sepik River flux of DOC is 3.2×10¹⁰ mol yr⁻¹ and POC is 1.1×10¹¹ mol yr⁻¹. The estimates for total river nutrient fluxes to the sea are 1.1×10¹⁰ mol yr⁻¹ for nitrogen and 4.6×10⁸ mol yr⁻¹ for phosphorus. The Sepik DOC flux is about equal to that combined from all four major rivers that enter the Gulf of Papua on the south coast of PNG. The Sepik inorganic PIC flux is low (1.4×10⁸ mol yr⁻¹) as the river does not drain carbonate soils. With a narrow continental shelf, and strong coastal currents, much of this exported material is available for long distance transport into the coastal Bismarck Sea and beyond.     

Net ecosystem metabolism of a coastal embayment fertilised by upwelling and continental runoff

O₂, N, P and Si net ecosystem metabolism of the Ría de Ares-Betanzos (NW Iberian upwelling system) was estimated during two 3-wk periods of contrasting summer downwelling and autumn upwelling conditions by means of a transient 2-D kinematic box model. The subtidal circulation was positive in both situations, although it was depressed during downwelling and enhanced during upwelling. Concurrently, the ría was fertilised mainly by shelf bottom waters, which introduced from 69% (under downwelling) to almost 100% (under upwelling) of the limiting N nutrients. The ría was an efficient nutrient trap: about 70% of the N nutrients that entered the embayment were retained under downwelling conditions (average flushing time, 9 days) and about 50% under upwelling conditions (average flushing time 3 days). Although the trapping efficiency was lower, the net ecosystem production (NEP) was much higher under upwelling (from 1.0±0.3 to 1.5±0.4 g C m⁻² d⁻¹), than under downwelling favourable winds (from 0.2±0.1 to 0.3±0.1 g C m⁻²). The stoichiometry of NEP suggests that P and N compounds recycled faster than C compounds, specially in the inner segment of the ría. The net degree of silification was twice in the inner than in the outer segment of the ría.