Using hyperspectral reflectance data to assess biocontrol damage of giant salvinia

Field hyperspectral reflectance data were studied at 50 wavebands (10-nm bandwidth) over the 400- to 900-nm spectral range to determine their potential for distinguishing among giant salvinia (Salvinia molesta Mitchell) plants subjected to four population levels of salvinia weevils (Cyrtobagous salviniae Calder and Sands) to develop feeding damage to the plants. The four populations included a control with no insects and those with low, medium and high insect populations. The plants were studied in two experiments on each of two dates: 14 October 2010 and 21 July 2011. Two procedures were used to determine the optimum bands for discriminating among treatments: least significant difference (LSD) and stepwise discriminant analysis. The LSD comparison test results for both October and July experiments showed that generally the best bands for separating among treatments occurred in the green (505–595 nm), red (605–635 nm), red-near-infrared (NIR; 695–745 nm) edge and NIR (755–895 nm) regions where three to four treatments could be distinguished. Stepwise discriminant analysis identified four bands in the green, red and red-NIR edge to be significant to discriminate among the four treatments in Experiment 1 in October. For Experiment 2 in October, discriminant analysis identified five bands in the blue, green, red and NIR regions to be significant for distinguishing among the treatments. In Experiment 1 in July, five bands in the blue, green, red-NIR edge and NIR regions were found to be significant to discriminate among the treatments. For Experiment 2 in July, discriminant analysis identified four bands in the blue, green and red-NIR edge regions to be significant to discriminate among the treatments.     

Multiple statistical approaches for the discrimination of mangrove species of Rhizophoraceae using transformed field and laboratory hyperspectral data

This study aims at discriminating eight mangrove species of Rhizophoraceae family of Indian east coast using field and laboratory spectra in spectral range (350–2500 nm). Parametric and non-parametric statistical analyses were applied on spectral data in four spectral modes: (i) reflectance (ii) continuum removed, (iii) additive inverse and (iv) continuum removed additive inverse. We introduced continuum removal of inverse spectra to utilize the advantage of continuum removal in reflectance region. Non-parametric test gave better separability than parametric test. Principal component analysis and stepwise discriminant analysis were applied for feature reduction and to identify optimal wavelengths for species discrimination. To quantify the separability, Jeffries–Matusita distance measure was derived. Green (550 nm), red edge (680–720 nm) and water absorption region (1470 and 1850 nm) were found to be optimal wavelengths for species discrimination. The continuum removal of additive inverse spectra gave better separability than the continuum removed spectra.     

Assessment of Aphid Infestation in Mustard by Hyperspectral Remote Sensing

Field experiment was conducted during 2009–10 and 2010–11 rabi season at research farm of IARI, New Delhi for assessing the aphid infestation in mustard. In aphid infested plant the LAI was 67 to 94% lower than healthy plant. Chlorophyll concentration decreased to 50% in infested plant as compared to healthy plant. Infestation was more severe in late sown crop and due to aphid infestation the percentage oil content and yield was reduced significantly. The spectral reflectance of aphid infested canopy and healthy canopy taken in the laboratory had significant difference in NIR region. In the visible region, the reflectance peak occurred in healthy canopy at around 550–560 nm while this peak was lower by 31% in the aphid infested canopy. The reflectance for healthy crop was found to be more in visible as well as NIR region as compared to aphid infested canopy. The most significant spectral bands for the aphid infestation in mustard are in visible (550–560 nm) and near infrared regions (700–1250 nm and 1950–2450 nm). The different level of aphid infestation can be identified in 1950–2450 nm spectral regions. Spectral indices viz NDVI, RVI, AI and SIPI had significant correlation with aphid infestation. Hence these indices could be used for identifying aphid infestation in mustard.     

Discrimination of Spectrally-Close Crops Using Ground-Based Hyperspectral Data

Hyperspectral remote sensing, because of its large number of narrow bands, has shown possibility of discriminating the crops. Current study was carried out to select the optimum bands for discrimination among pulses, cole crops and ornamental plants using the ground-based Hyperspectral data in Patha village, Lalitpur district, Uttar Pradesh state and Kolkata, West Bengal state. The field observations of reflectance were taken using a 512-channel spectroradiometer with a range of 325–1075 nm. The stepwise discriminant analysis was carried out and separability measures, such as Wilks’ lambda and F-Value were used as criteria for identifying the narrow bands. The analysis showed that, the best four bands for pulse crop discrimination lie mostly in NIR and early MIR regions i.e. 750, 800, 940 and 960 nm. Within cole crops discrimination is primarily determined by the green, red and NIR bands of 550, 690, 740, 770 and 980 nm. The separability study showed the bands 420,470,480,570,730,740, 940, 950, 970, 1030 nm are useful for discriminating flowers.     

Field spectroradiometer and simulated multispectral bands for discriminating invasive species from morphologically similar cohabitant plants

One of the challenges in fighting plant invasions is the inefficiency of identifying their distribution using field inventory techniques. Remote sensing has the potential to alleviate this problem effectively using spectral profiling for species discrimination. However, little is known about the capability of remote sensing in discriminating between shrubby invasive plants with narrow leaf structures and other cohabitants with similar ecological niche. The aims of this study were therefore to (1) assess the classification performance of field spectroradiometer data among three bushy and shruby plants (Artemesia afra, Asparagus laricinus, and Seriphium plumosum) from the coexistent plant species largely dominated by acacia and grass species, and (2) explore the performance of simulated spectral bands of five space-borne images (Landsat 8, Sentinel 2A, SPOT 6, Pleiades 1B, and WorldView-3). Two machine-learning classifiers (boosted trees classification and support vector machines) were used to classify raw hyperspectral (n = 688) and simulated multispectral wavelengths. Relatively high classification accuracies were obtained for the invasive species using the original hyperspectral bands for both classifiers (overall accuracy, OA = 83–97%). The simulated data resulted in higher accuracies for Landsat 8, Sentinel 2A, and WorldView-3 compared to those computed for bands simulated to SPOT 6 and Pleiades 1B data. These findings suggest the potential of remote-sensing techniques in the discrimination of different plant species with similar morphological characteristics occupying the same niche.     

Spectral discrimination of giant reed (Arundo donax L.): A seasonal study in riparian areas

The giant reed (Arundo donax L.) is amongst the one hundred worst invasive alien species of the world, and it is responsible for biodiversity loss and failure of ecosystem functions in riparian habitats. In this work, field spectroradiometry was used to assess the spectral separability of the giant reed from the adjacent vegetation and from the common reed, a native similar species.The study was conducted at different phenological periods and also for the giant reed stands regenerated after mechanical cutting (giant reed_RAC). A hierarchical procedure using Kruskal–Wallis test followed by Classification and Regression Trees (CART) was used to select the minimum number of optimal bands that discriminate the giant reed from the adjacent vegetation. A new approach was used to identify sets of wavelengths – wavezones – that maximize the spectral separability beyond the minimum number of optimal bands. Jeffries Matusita and Bhattacharya distance were used to evaluate the spectral separability using the minimum optimal bands and in three simulated satellite images, namely Landsat, IKONOS and SPOT.Giant reed was spectrally separable from the adjacent vegetation, both at the vegetative and the senescent period, exception made to the common reed at the vegetative period. The red edge region was repeatedly selected, although the visible region was also important to separate the giant reed from the herbaceous vegetation and the mid infrared region to the discrimination from the woody vegetation. The highest separability was obtained for the giant reed_RAC stands, due to its highly homogeneous, dense and dark-green stands. Results are discussed by relating the phenological, morphological and structural features of the giant reed stands and the adjacent vegetation with their optical traits. Weaknesses and strengths of the giant reed spectral discrimination are highlighted and implications of imagery selection for mapping purposes are argued based on present results.     

Crop Residue Discrimination Using Ground-Based Hyperspectral Data

Crop residue has become an increasingly important factor in agriculture management. It assists in the reduction of soil erosion and is an important source of soil organic carbon (soil carbon sequestration). In recent past, remote sensing, especially narrowband, data have been explored for crop residue assessment. In this context, a study was carried out to identify different narrow-bands and evaluate the performance of SWIR region based spectral indices for crop residue discrimination. Ground based hyperspectral data collected for wheat crop residue was analyzed using Stepwise Discriminant Analysis (SDA) technique to select significant bands for discrimination. Out of the seven best bands selected to discriminate between matured crop, straw heap, combine-harvested field with stubbles and soil, four bands were from SWIR (1980, 2030, 2200, 2440 nm) region. Six spectral indices were computed, namely CAI, LCA, SINDRI, NDSVI, NDI5 and hSINDRI for crop residue discrimination. LCA and CAI showed to be best (F?>?115) in discriminating above classes, while LCA and SINDRI were best (F?>?100) among all indices in discriminating crop residue under different harvesting methods. Comparison of different spectral resolution (from 1 nm to 150 nm) showed that for crop residue discrimination a resolution of 100 nm at 2100–2300 m region would be sufficient to discriminate crop residue from other co-existing classes.     

Evaluation of linear discriminant and support vector machine classifiers for classification of nitrogen status in mature oil palm from SPOT-6 satellite images: analysis of raw spectral bands and spectral indices

Nitrogen (N) management is important in sustaining oil palm production. Remote sensing-based approaches via spectral index have promise in assessing the N nutrition content. The objectives of this study are; (i) to examine the N classification capability of three spectral indices (SI) such as visible (Vis), near infrared (NIR) and a combination of visible and NIR (Vis + NIR) from the SPOT-6 satellite, and (ii) to compare the performance of linear discriminant analysis (LDA) and support vector machine (SVM) in discriminating foliar N content of mature oil palms. Nitrogen treatments varied from 0 to 2 kg per palm. The N-sensitive SIs tested in this study were age-dependent. The Vis index (BGRI₁) (CVA = 79.55%) and Vis + NIR index (NDVI, NG, IPVI and GNDVI) (CVA = 81.82%) were the best indices to assess N status of young and prime mature palms through the SVM classifier.     

Applying broadband spectra to assess biological control of saltcedar in west Texas

Broadband field spectra were assessed to discriminate invasive saltcedar (Tamarix spp.) trees exhibiting feeding damage caused by the saltcedar leaf beetle (Diorhadba spp.) from other land cover types. Data were collected at two study sites near Presidio, Texas in 2010 and 2011. Spectral bands evaluated were coastal blue (400–450?nm), blue (450–510?nm), green (510–580?nm), yellow (585–625?nm), red (630–690?nm), red-edge (705–745?nm), and near-infrared (770–895, 860–1040?nm). Data were evaluated with analysis of variance and Scheffe’s multiple comparison test (α?=?0.05). The red band generally separated severely damaged saltcedar trees from other land cover features. Near-infrared bands separated defoliated saltcedar trees. Broadband spectra has potential for distinguishing saltcedar trees exhibiting feeding damage caused by the saltcedar leaf beetle from other associated features, thus supporting future explorations of airborne and satellite-borne multispectral systems to monitor biological control of saltcedar within complex landscapes.     

Identifying saltcedar with hyperspectral data and support vectormachines

Saltcedar (Tamarix spp.) are a group of dense phreatophytic shrubs and trees that are invasive to riparian areas throughout the United States. This study determined the feasibility of using hyperspectral data and a support vector machine (SVM) classifier to discriminate saltcedar from other cover types in west Texas. Spectral measurements were collected with a ground-based hyperspectral spectroradiometer (spectral range 350–2500 nm) in December 2008 and April 2009. Spectral data consisting of 1698 spectral bands (400–1349, 1441–1789, 1991–2359 nm) were subjected to a support vector machine classification to differentiate saltcedar from other vegetative and non-vegetative classes. For both dates, a linear kernel model with a C value (error penalty) of 100 was found optimum for separating saltcedar from the other classes. It identified saltcedar with accuracies ranging from 95% to 100%. Findings support further exploration of hyperspectral remote sensing technology and SVM classifiers for differentiating saltcedar from other cover types.     

Sensitivity of narrowband vegetation indices to boreal forest LAI,reflectance seasonality and species composition

There is growing evidence that imaging spectroscopy could improve the accuracy of satellite-based retrievals of vegetation attributes, such as leaf area index (LAI) and biomass. In this study, we evaluated narrowband vegetation indices (VIs) for estimating overstory effective LAI (LAI_eff) in a southern boreal forest area for the period between the end of snowmelt and maximum LAI using three Hyperion images and concurrent field measurements. We compared the performance of narrowband VIs with two SPOT HRVIR images, which closely corresponded to the imaging dates of the Hyperion data, and with synthetic broadband VIs computed from Hyperion images. According to the results, narrowband VIs based on near infrared (NIR) bands, and NIR and shortwave infrared (SWIR) bands showed the strongest linear relationships with LAI_eff over its typical range of variation and for the studied period of the snow-free season. The relationships were not dependent on dominant tree species (coniferous vs. broadleaved), which is an advantage in heterogeneous boreal forest landscapes. The best VIs, particularly those based on NIR spectral bands close to the 1200 nm liquid water absorption feature, provided a clear improvement over the best broadband VIs.     

Assessing Metal-Induced Changes in the Visible and Near-Infrared Spectral Reflectance of Leaves: A Pot Study with Sunflower (<Emphasis Type="Italic">Helianthus annuus</Emphasis> L.)

The aim of this study was to monitor changes in leaf spectral reflectance due to phytoaccumulation of trace elements (Cd, Pb, and As) in sunflower mutant (M5 mutant line 38/R4-R6/15-35-190-04-M5) grown in spiked and in situ metal-contaminated potted soils. Reflectance spectra (350–2500 nm) of leaves were collected using portable ASD spectroradiometer, and respective leaves sample were analyzed for total metal contents. The spectral changes were quite noticeable and showed increased visible and decreased NIR reflectance for sunflower grown in soil spiked with 900 mg As kg^?1, and in in situ metal-contaminated soils. These changes also involved a blue-shift feature of red-edge position in the first derivatives spectra, studied vegetation indices and continuum removed absorption features at 495, 680, 970, 1165, 1435, 1780, and 1925 nm wavelength. Correlograms of leaf-metal concentration and reflectance values show highest degrees of overall correlation for visible, near-infrared, and water-sensitive wavelengths. Partial least square and multiple linear regression statistical models (cross-validated), respectively, based on Savitzky–Golay filter first-order derivative spectra and combination of spectral feature such as vegetation indices and band depths yielded good prediction of leaf-metal concentrations.     

Spectral detection of stress-related pigments in salt-lake succulent halophytic shrubs

The spectral detection of vegetation pigment concentrations has a high potential value, but it is still underdeveloped, especially for pigments other than chlorophylls. In this study, the seasonal pigment dynamics of two Tecticornia species (samphires; halophytic shrubs) from north-western Australia were correlated with spectral indices that best document the pigment changes over time. Pigment dynamics were assessed by analysing betacyanin, chlorophyll and carotenoid concentrations at plant level and by measuring reflectance at contrasting seasonal dates. Plant reflectance was used to define a new reflectance index that was most sensitive to the seasonal shifts in Tecticornia pigment concentrations. The two Tecticornia species turned from green to red-pinkish for the period March–August 2012 when betacyanins increased almost nine times in both species. Chlorophyll levels showed the opposite pattern to that of betacyanins, whereas carotenoid levels were relatively stable. Normalised difference indices correlated well with betacyanin (r = 0.805, using bands at 600 and 620 nm) and chlorophyll (r = 0.809, using bands at 737 and 726 nm). Using knowledge of chlorophyll concentrations slightly improved the ability of the spectral index to predict betacyanin concentration (r = 0.822 at bands 606 and 620 nm, in the case of chemically determined chlorophyll, r = 0.809 when using remotely sensed chlorophyll). Our results suggest that this new spectral index can reliably detect changes in betacyanin concentrations in vegetation, with potential applications in ecological studies and environmental impact monitoring.     

Spectral Characteristics of Domestic and Wild Mammals

Few studies have recorded the spectral signatures of domesticated live animals and in particular few have examined wild species. Using in situ radiometry we acquired visual and near infrared spectral signatures of wild elk (Cervus elaphus) and domesticated cattle (Bos taurus) and horses (Equus caballus). Signatures were significantly different among species across all bands with the exception of cattle and horses in the red band. Further research is needed to determine if the shallower slopes in the red-shift region of the animal signatures would allow for distinction from vegetation using various remote sensors. Application of in situ spectral signatures to remotely sensed imagery could provide an efficient method for counting wildlife.     

Remote estimation of nitrogen and chlorophyll contents in maize at leaf and canopy levels

Leaf and canopy nitrogen (N) status relates strongly to leaf and canopy chlorophyll (Chl) content. Remote sensing is a tool that has the potential to assess N content at leaf, plant, field, regional and global scales. In this study, remote sensing techniques were applied to estimate N and Chl contents of irrigated maize (Zea mays L.) fertilized at five N rates. Leaf N and Chl contents were determined using the red-edge chlorophyll index with R² of 0.74 and 0.94, respectively. Results showed that at the canopy level, Chl and N contents can be accurately retrieved using green and red-edge Chl indices using near infrared (780–800 nm) and either green (540–560 nm) or red-edge (730–750 nm) spectral bands. Spectral bands that were found optimal for Chl and N estimations coincide well with the red-edge band of the MSI sensor onboard the near future Sentinel-2 satellite. The coefficient of determination for the relationships between the red-edge chlorophyll index, simulated in Sentinel-2 bands, and Chl and N content was 0.90 and 0.87, respectively.     

Sentinel-2 time series based optimal features and time window for mapping invasive Australian native Acacia species in KwaZulu Natal,South Africa

The spread of invasive Australia native Acacia tree species threatens biodiversity and adversely affecting on vegetative structure and function, including plant community composition, quantity and quality worldwide. It is essential to provide researchers and land managers for biological invasion science and management with accurate information of the distribution of invasive alien species and their dynamics. Remotely sensed data that reveal spatial distribution of the earth’s surface features/objects provide great potential for this purpose. Consistent satellite monitoring of alien invasive plants is often difficult because of lack of sufficient spectral contrast between them and co-occurring plants species. Time series analysis of spectral properties of the species can reveal timing of their variations among adjacent species. This information can improve accuracy of invasive species discrimination and mapping using remote sensing data at large scale. We sought to identify and better understand the optimal time window and key spectral features sufficient to detect invasive Acacia trees in heterogeneous forested landscape in South Africa. We explored one-year (January to December 2018) time series spectral bands and vegetation indices derived from optical Copernicus Sentinel-2 data. The attributes correspond to geographical information of invasive Acacia and native species recorded during a field survey undertaken from 21 February to 25 February 2018 over Kwa-Zulu Natal grasslands landscape, in South Africa. The results showed comparable separability prospects between times series of spectral bands and that of vegetation indices.Substantial differences between Acacia species and native species were observed from spectral indices and spectral bands which are sensitive to Leaf Area Index, canopy chlorophyll and nitrogen concentrations. The results further revealed spectral differences between Acacia species and co-occurring native vegetation in April (senescence for deciduous plants), June-July (dry season), September (peak flowering period of Acacia spp) and December (leaf green-up) with vegetation indices (overall accuracy > 80 %). While spectral bands showed the beginning of the growing season (November–January) and peak vegetation productivity (February-March) as the optimal seasons or dates for image acquisition for discriminating Acacias from its co-occurring native species (overall accuracy > 80 %). In general, the use of Sentinel-2 time series spectral bands and vegetation indices has increased our understanding of Australian Acacias spectral dynamics, and proved that the sentinel-2 data is useful for characterization and monitoring Acacias over a large scale. Our results and approach could assist in deriving detailed geographic information of the species and assessment of a spread invasive plant species and severity of invasion.     

Quantification of LST and CO2 levels using Landsat-8 thermal bands on urban environment

Land surface temperature (LST) is an important aspect in global to regional change studies, for control of climate change and balancing of high temperature. Urbanization is one of the influencing factors increasing land surface and atmospheric temperature, by the emission of greenhouse gases (e.g. CO₂, NO and methane). In the present study, LST was derived from Landsat-8 of multitemporal data sets to analyse the spatial structure of the urban thermal environment in relation to the urban surface characteristics and land use–land cover (LULC). LST is influenced by the greenhouse gases i.e. CO₂ plays an important role in increasing the earth’s surface temperature. In order to provide the evidence of influence of CO₂ on LST, the relationship between LST, air temperature and CO₂ was analysed. Landsat-8 satellite has two thermal bands, 10 and 11. These bands were used to accurately to calculate the temperature over the study area. Results showed that the strength of correlation between ground monitoring data and satellite data was high. Based on correlation values of each month April (R² = 0.994), May (R² = 0.297) and June (R² = 0.934), observed results show that band 10 was significantly correlating with air temperature. Relationship between LST and CO₂ levels were obtained from linear regression analysis. band 11 was correlating significantly with CO₂ values in each of the months April (R² = 0.217), May (R² = 0.914) and June, (R² = 0.934), because band 11 is closer to the 15-micron band of CO₂. From the results, it was observed that band 10 can be used for calculating air temperature and band 11 can be used for estimation of greenhouse gases.     

Texture augmented detection of macrophyte species using decision trees

Image classification using multispectral sensors has shown good performance in detecting macrophytes at the species level. However, species level classification often does not utilize the texture information provided by high resolution images. This study investigated whether image texture provides useful vector(s) for the discrimination of monospecific stands of three floating macrophyte species in Quickbird imagery of the South Nation River. Semivariograms indicated that window sizes of 5 × 5 and 13 × 13 pixels were the most appropriate spatial scales for calculation of the grey level co-occurrence matrix and subsequent texture attributes from the multispectral and panchromatic bands. Of the 214 investigated vectors (13 Haralick texture attributes * 15 bands + 9 spectral bands + 10 transformations/indices), feature selection determined which combination of spectral and textural vectors had the greatest class separability based on the Mann–Whitney U-test and Jefferies–Matusita distance. While multispectral red and near infrared (NIR) performed satisfactorily, the addition of panchromatic-dissimilarity slightly improved class separability and the accuracy of a decision tree classifier (Kappa: red/NIR/panchromatic-dissimilarity – 93.2% versus red/NIR – 90.4%). Class separability improved by incorporating a second texture attribute, but resulted in a decrease in classification accuracy. The results suggest that incorporating image texture may be beneficial for separating stands with high spatial heterogeneity. However, the benefits may be limited and must be weighed against the increased complexity of the classifier.     

Testing the capability of spectral resolution of the new multispectral sensors on detecting the severity of grey leaf spot disease in maize crop

Abstract

In this study, we tested whether GLS field symptoms on maize can be detected using hyperspectral data re-sampled to WorldView-2, Quickbird, RapidEye and Sentinel-2 resolutions. To achieve this objective, Random Forest algorithm was used to classify the 2013 re-sampled spectra to represent the three identified disease severity categories. Results showed that Sentinel-2, with 13 spectral bands, achieved the highest overall accuracy and kappa value of 84% and 0.76, respectively, while the WorldView-2, with eight spectral bands, yielded the second highest overall accuracy and kappa value of 82% and 0.73, respectively. Results also showed that the 705 and 710 nm red edge bands were the most valuable in detecting the GLS for Sentinel-2 and RapidEye, respectively. On the re-sampled WorldView 2 and Quickbird sensor resolutions, the respective 608 and 660 nm in the yellow and red bands were identified as the most valuable for discriminating all categories of infection.     

Estimating LAI and mapping canopy storage capacity for hydrological applications in wattle infested ecosystems using Sentinel-2 MSI derived red edge bands

This study assessed the strength of Sentinel-2 multispectral instrument (MSI) derived Red Edge (RE) bands in estimating Leaf Area Index (LAI) and mapping canopy storage capacity (CSC) for hydrological applications in wattle infested ecosystems. To accomplish this objective, this study compared the estimation strength of models derived, using standard bands (all bands excluding the RE band) with those including RE bands, as well as different vegetation indices. Sparse Partial Least Squares (SPLSR) and Partial Least Squares Regression (PLSR) ensembles were used in this study. Results showed that the RE spectrum covered by the Sentinel-2 MSI satellite reduced the estimation error by a magnitude of 0.125 based on simple ratio (RE SR) vegetation indices from 0.157 m²· m^?2 based on standard bands, and by 0.078 m²· m^?2 based on red edge normalised difference vegetation (NDVI-RE). The optimal models for estimating LAI to map CSC were obtained based on the RE bands centered at 705 nm (Band 5), 740 nm (Band 6), 783 nm (Band 7) as well as 865 nm (Band 8a). A root mean square error of prediction (RMSEP) of 0.507 m²· m^?2 a relative root mean square error of prediction (RRMSEP) of 11.3% and R² of 0.91 for LAI and a RMSEP of 0.246 m²/m² (RRMSEP = 7.9%) and R² of 0.91 for CSC were obtained. Overall, the findings of this study underscore the relevance of the new copernicus satellite product in rapid monitoring of ecosystems that are invaded by alien invasive species.