Water quality in the Great Barrier Reef region: responses of mangrove, seagrass and macroalgal communities

Marine plants colonise several interconnected ecosystems in the Great Barrier Reef region including tidal wetlands, seagrass meadows and coral reefs. Water quality in some coastal areas is declining from human activities. Losses of mangrove and other tidal wetland communities are mostly the result of reclamation for coastal development of estuaries, e.g. for residential use, port infrastructure or marina development, and result in river bank destabilisation, deterioration of water clarity and loss of key coastal marine habitat. Coastal seagrass meadows are characterized by small ephemeral species. They are disturbed by increased turbidity after extreme flood events, but generally recover. There is no evidence of an overall seagrass decline or expansion. High nutrient and substrate availability and low grazing pressure on nearshore reefs have lead to changed benthic communities with high macroalgal abundance. Conservation and management of GBR macrophytes and their ecosystems is hampered by scarce ecological knowledge across macrophyte community types.     

Evidence for the effects of metal contamination on the intertidal macrobenthic assemblages of the Fal Estuary

The intertidal invertebrate macrofauna of five creeks in the Fal estuarine system, Cornwall, UK, is compared with data from 40 locations in six other estuaries in south-west Britain. Multivariate analysis shows that the community composition in the Fal is distinct from all the other estuaries. The differences are principally due to the absence of two crustacean species, Corophium voluntator and Cyathura carinata, and the high abundance of small opportunistic annelid species. The Fal Estuary is heavily contaminated with heavy metals as a result of mining in the catchment, and the faunistic features are commensurate with what is known of the relative sensitivities of marine invertebrate taxa to pollution.     

Spatio-temporal variability of phytoplankton assemblages in the Pearl River estuary, with special reference to the influence of turbidity and temperature

The Pearl River Estuary is among the largest estuaries in the subtropical areas of the world. Along the salinity and turbidity gradient between the freshwater reach of the Pearl River and the marine water of the South China Sea, the spatial and temporal composition and abundance of phytoplankton was examined in relation to physic-chemical variables during the dry and wet seasons of 2009. Water samples for phytoplankton and environmental parameters were collected from 18 stations during two seasons along a transect from upper estuary to estuarine and marine sectors. A total of 162 species belonging to 7 phyla were identified, with diatoms dominated in both seasons while dinoflagellates proliferated in autumn. Two main clusters and three sub-clades under each main cluster corresponding to seasons and water sectors were defined with multivariate analysis (cluster and nMDS). Based on the species composition and abundance of phytoplankton, both seasonal and spatial variability were observed at a significant level (ANOSIM: season effect, R=0.896, P<0.01; station effect, R=0.463, P<0.01). The correlation analysis between biotic and abiotic variables indicated that instead of the “proverbial” anthropogenic nutrients loading and salinity gradient, the best 2-variable combination (temperature and turbidity) showed a significant effect on the pattern of phytoplankton assemblages (ρ_w=0.49, BIOENV analysis) between wet and dry seasons in the Pearl River Estuary. This result suggests that physical disturbance either natural or manmade is a more important factor in regulating the phytoplankton community structure within the hydrologically distinct zone of estuaries.     

Larval fish assemblages in a tropical mangrove estuary and adjacent coastal waters: Offshore-inshore flux of marine and estuarine species

A total of 92,934 fish larvae representing 19 families were sampled monthly from the Sangga Kecil estuary (Matang Mangrove Forest Reserve) and adjacent coastal waters from May 2002 to October 2003. Larval fish assemblages were numerically dominated by Gobiidae (50.1%) and Engraulidae (38.4%). Canonical Correspondence Analysis (CCA) revealed that the larval fish assemblages, including their ontogenetic stages, differed between the mangrove estuary and adjacent offshore waters, and that salinity, turbidity and zooplankton food are the major environmental factors structuring the larval fish assemblages. Estuarine preflexion gobiid larvae were ubiquitous in the coastal and estuarine waters. Larval stages of euryhaline species that were spawned in offshore waters, such as Engraulidae and Clupeidae, were largely advected into mangrove areas at the postflexion stages. Larvae of other euryhaline fishes (Sciaenidae, Blenniidae and Cynoglossidae) that may have been spawned inside the estuary were, however, exported to offshore waters. Given that the collective number of juvenile and adult fish families in the Matang estuary was 53, while the number of larval families was only 17, the former is quite disconnected from the existing larval fish population in the estuary.     

Accumulation of organochlorines and brominated flame retardants in estuarine and marine food chains: field measurements and model calculations

Food chain accumulation of organochlorines and brominated flame retardants in estuarine and marine environments is compared to model estimations and fresh water field data. The food chain consists of herbivores, detritivores and primary and secondary carnivores i.e. fish, fish-eating birds and marine mammals. Accumulation of polychlorinated biphenyls is predicted well by OMEGA for herbi-detritivores and primary and secondary carnivorous fish. Ratios are similar to those found for fresh water species. Accumulation ratios for fish-eating birds and mammals are overestimated by the model, which is attributed partly to biotransformation of meta-para unsubstituted congeners. Additionally, birds may feed in other less polluted areas. For brominated diphenylethers (BDE) accumulation patterns are highly species and congener specific. Accumulation depends on both K(ow) and metabolization capacities. BDE47 is the predominant congener in lower trophic levels. For marine birds and mammals accumulation ratios of BDE99 and 100 are similar to or higher than ratios of persistent PCBs.     

A critical review of the potential impacts of marine seismic surveys on fish & invertebrates

Marine seismic surveys produce high intensity, low-frequency impulsive sounds at regular intervals, with most sound produced between 10 and 300 Hz. Offshore seismic surveys have long been considered to be disruptive to fisheries, but there are few ecological studies that target commercially important species, particularly invertebrates. This review aims to summarise scientific studies investigating the impacts of low-frequency sound on marine fish and invertebrates, as well as to critically evaluate how such studies may apply to field populations exposed to seismic operations. We focus on marine seismic surveys due to their associated unique sound properties (i.e. acute, low-frequency, mobile source locations), as well as fish and invertebrates due to the commercial value of many species in these groups. The main challenges of seismic impact research are the translation of laboratory results to field populations over a range of sound exposure scenarios and the lack of sound exposure standardisation which hinders the identification of response thresholds. An integrated multidisciplinary approach to manipulative and in situ studies is the most effective way to establish impact thresholds in the context of realistic exposure levels, but if that is not practical the limitations of each approach must be carefully considered.     

Monitoring Tidal Conditions in Estuaries of the Karelian Coast of the White Sea

In September 2000, July 2001, and August 2002, three marine expeditions onboard the R/V Ekolog were carried out to study physical, chemical, geological, and biological processes in two estuaries of Karelian coast of the White Sea. A wide complex of modern methods of marine field work was used. The most recent biochemical studies on the estimation of mechanisms of adaptive reactions of hydrobionts to environmental factors (including anthropogenic) were used.     

Herbicides implicated as the cause of severe mangrove dieback in the Mackay region, NE Australia: consequences for marine plant habitats of the GBR World Heritage Area

Herbicides, particularly diuron, were correlated with severe and widespread dieback of the dominant mangrove, Avicennia marina (Forsk.) Vierh. var. eucalyptifolia (Val.) N.C. Duke (Avicenniaceae), its reduced canopy condition, and declines in seedling health within three neighbouring estuaries in the Mackay region of NE Australia. This unusual species-specific dieback, first observed in the early 1990s, had gotten notably worse by 2002 to affect >30 km(2) of mangroves in at least five adjacent estuaries in the region. Over the past century, agricultural production has responded well to the demands of increasing population with improvements in farm efficiency assisted by significant increases in the use of agricultural chemicals. However, with regular and episodic river flow events, these chemicals have sometimes found their way into estuarine and nearshore water and sediments where their effects on marine habitats have been largely unquantified. Investigations over the last three years in the Mackay region provide compelling evidence of diuron, and possibly other agricultural herbicides, as the most likely cause of the severe and widespread mangrove dieback. The likely consequences of such dieback included declines in coastal water quality with increased turbidity, nutrients and sediment deposition, as well as further dispersal of the toxic chemicals. The implications of such findings are immense since they describe not only the serious deterioration of protected and beneficial mangrove habitat but also the potential for significant direct and indirect effects on other highly-valued estuarine and marine habitats in the region, including seagrass beds and coral reefs of the Great Barrier Reef lagoon. This article reviews all key findings and observations to date and describes the essential correlative and causative evidence.     

Using attached macroalgae to assess ecological status of British estuaries for the European Water Framework Directive

The EC Water Framework Directive requires that ecological quality be assessed in transitional waters using the abundance and species composition of macroalgae. In estuaries, which form the majority of transitional waters, species composition is not a suitable measure. This arises from two features: (i) there is a continuous, natural change in species composition along the gradient of estuarine conditions which makes it difficult to know where within an estuary the species composition should be assessed, (ii) the inner estuarine macroalgal community of mat-forming species is very tolerant to both natural and anthropogenic stress and species poor which makes it insensitive to environmental variations in terms of species composition. An alternative feature is proposed based on the extent of upstream penetration of perennial fucoid algae. This proposal is founded on a series of case studies of the changes in fucoid limits, within a number of estuaries in the British Isles, consequent upon changes in pollution status over the last three decades. This also has to take into account variations of fucoid penetration owing to natural factors such as range of salinity variation and turbidity. The abundance criterion is taken to mean the absence of macroalgal blooms or "green tides", because general abundance of species is hard to quantify meaningfully in the upper estuarine mat-forming species and in the lower estuary is subject to great variation owing to the physical variability of estuary types.     

An overview of physical and ecological processes in the Rio de la Plata Estuary

The Rio de la Plata is a large-scale estuary located at 35°S on the Atlantic coast of South America. This system is one of the most important estuarine environments in the continent, being a highly productive area that sustains valuable artisanal and coastal fisheries in Uruguay and Argentina. The main goals of this paper are to summarize recent knowledge on this estuary, integrating physical, chemical and biological studies, and to explore the sources and ecological meaning of estuarine variability associated to the stratification/mixing alternateness in the estuary. We summarized unpublished data and information from several bibliographic sources. From study cases representing different stratification conditions, we draw a holistic view of physical patterns and ecological processes of the stratification/mixing alternateness. This estuary is characterized by strong vertical salinity stratification most of the time (the salt-wedge condition). The head of the estuary is characterized by a well-developed turbidity front. High turbidity constrains their photosynthesis. Immediately offshore the turbidity front, water becomes less turbid and phytoplankton peaks. As a consequence, trophic web in the estuary could be based on two sources of organic matter: phytoplankton and plant detritus. Dense plankton aggregations occur below the halocline and at the tip of the salt wedge. The mysid Neomysis americana, a key prey for juvenile fishes, occurs all along the turbidity front. A similar spatial pattern is shown by one of the most abundant benthic species, the clam Mactra isabelleana. These species could be taken advantage of the particulate organic matter and/or phytoplankton concentrated near the front. Nekton is represented by a rich fish community, with several fishes breeding inside the estuary. The most important species in terms of biomass is Micropogonias furnieri, the main target for the coastal fisheries of Argentina and Uruguay. Two processes have been identified as producing partially stratified conditions: persistent moderate winds (synoptic scale), or low freshwater runoff (interannual scale). Less frequently, total mixing of the salt wedge occurs after several hours of strong winds. The co-dominance of diatoms (which proliferate in highly turbulent environments) and red tides dinoflagellates and other bloom taxa (better adapted to stratified conditions), would indicate great variability in the turbulence strength, probably manifested as pulses. Microplankton and ichthyoplankton assemblages defined for the stratified condition are still recognized during the partially mixed condition, but in this case they occupy the entire water column: vertical structure of the plankton featuring the stratified condition become lost. Bottom fish assemblages, on the contrary, shows persistence under the different stratification conditions, though the dominant species of the groups show some variations. Summarizing, the Río de la Plata Estuary is a highly variable environment, strongly stratified most of the time but that can be mixed in some few hours by strong wind events that occur in an unpredictable manner, generating stratification/partially mixed (less frequently totally mixed) pulses all along the year. At larger temporal scales, the system is under the effects of river discharge variations associated to the ENSO cycle, but their ecological consequences are not fully studied.     

Plankton of the Baltic estuarine ecosystems with emphasis on Neva Estuary: a review of present knowledge and research perspectives

Different levels of eutrophication and pollution in the Baltic coastal waters in general, and in estuaries particularly define variations in the buffering capacity of ecosystems of these important filter zones between rivers and the adjacent Baltic Proper. Phyto- and zooplankton in the estuaries form important components of the pelagic food webs that participate in producing and structuring the matter, energy, and information fluxes in the ecosystems. Due to salinity gradients, estuaries provide a large variety of aquatic habitats for native populations of marine, brackish and fresh water plankton species. Non-indigenous planktonic species that expand their bio-geographical range and invade the Baltic coastal ecosystems also find favourable environments, establish permanent populations there, and impact aboriginal ecosystems. The dynamics of abundance, species diversity, population structure, productivity of planktonic communities, and peculiarities of trophic interactions in different Baltic estuaries are influenced by a number of common environmental factors. Being measured on the unified basis and monitored, changes (or stability) of structural and functional parameters of plankton communities can serve as indicators of alterations to the ecosystems. Comparative analyses and quantitative estimates of long-term changes in phyto- and zooplankton can contribute to evaluation of functional response of Baltic coastal ecosystems to anthropogenic stress. Both theoretical (modeling) and empirical studies of interactions within plankton communities aimed at the assessment of the role of planktonic organisms in water quality regulation, and applicability of these data for the evaluation of the status of ecosystems and their management can be considered as major goals for the future investigations in Baltic estuaries.     

Pfiesteria Piscicida; A New Biological Threat with Many Faces

In 1988, Drs. JoAnn Burkholder and Ed Noga of North Carolina State University discovered a previously unknown toxic dinoflagellate that eventually was named Pfiesteria piscicida. Accumulating data indicate that this dinoflagellate is a significant source of environmental stress in estuarine ecosystems. It has been estimated that since its discovery, outbreaks of this single-celled aquatic organism, and a second recently discovered species called Pfiesteria shumwayae, have killed millions of fish in estuaries along the eastern United States, and their toxins have harmed people. It has been implicated as the causative agent of major annual fish kills in these estuaries. Its prevalence is greatest in regions affected by anthropogenic nutrient loading from municipal wastewater, phosphate mining, fish processing plant discharge, and other sources. Over the last 20 years, the harmful public health and economic effects of algal blooms appear to have increased in frequency, intensity and geographic distribution. The recent toxic Pfiesteria outbreaks in estuaries of the middle and southern Atlantic coast indicate that anthropogenic stresses on the environment may also influence the effects of these blooms on fish and humans.     

Projected entrainment of fish resulting from aggregate dredging

Previous research to assess impacts from aggregate dredging has focussed on infaunal species with few studies made of fish entrainment. Entrainment evidence from hydraulic dredging studies is reviewed to develop a sensitivity index for benthic fish. Environmental monitoring attendant with the granting of new licences in the Eastern Channel Region (ECR) in 2006 offers a unique opportunity to assess the effects of dredging upon fish. Projected theoretical fish entrainment rates are calculated based upon: abundance data from 4m beam trawl sampling of fish species over the period 2005-2008; sensitivity data; and dredging activity and footprint derived from Electronic monitoring System (EMS) data. Results have been compared with actual entrainment rates and also against summary results from independent analysis of the changes in fish population over the period 2005-2008 (Drabble, 2012). The case is made for entrainment surveys to form part of impact monitoring for marine aggregate dredging.     

The use of diatom assemblages as ecological indicators in highly stratified estuaries and evaluation of existing diatom indices

Diatom indices are used to evaluate the ecological status of rivers but they have been rarely applied in estuaries. This study aimed to identify the diatom species indicating the main environmental gradients and pressures in a highly stratified estuary; and to evaluate the applicability of existing freshwater diatom indices. Marine influence due to salt-wedge intrusion and sea water mixing appeared as the main factor affecting diatom community. Three diatom assemblages were identified: indicators of riverine conditions (without marine influence), indicators of estuarine conditions (heterogeneous conditions with higher conductivities due to marine influence) and those specifically indicating well-established salt-wedge situations. Nowadays, the main human pressure affecting diatom community in the Ebro Estuary is the hydrological alteration resulting from flow regulation and abstraction. Several limitations were encountered in the application of diatom indices (e.g. inverse response with nutrients; ecologically important species not considered). Therefore, their use in estuaries should be done cautiously.     

Protecting the hand that feeds us: Seagrass (Zostera marina) serves as commercial juvenile fish habitat

Although fisheries are of major economic and food security importance we still know little about specific juvenile habitats that support such production. This is a major issue given the degradation to and lack of protection afforded to potential juvenile habitats such as seagrass meadows. In the present study we investigate the role of seagrass in supporting juvenile fish of commercial value. By assessing seagrass relative to adjacent sand we determined the presence of abundant juvenile fish. Nine commercial species were recorded and the most abundant of these were Plaice, Pollock and Herring. We provide the first quantitative evidence of the presence of juvenile fish of commercial value in seagrass surrounding Great Britain. Although the species that we found in seagrass as juveniles are not obligate seagrass users the resources that seagrass meadows offer to these fish provide significant long-term fitness benefits, potentially enhancing the whole population.     

Is it possible to assess the ecological status of highly stressed natural estuarine environments using macroinvertebrates indices?

Several biotic indices have been proposed for the assessment of the ecological status of benthic macroinvertebrates in marine waters, although none have been generally accepted. When it comes to assessing highly stressed natural environments, such as estuaries, the controversy and uncertainty is much higher than for any given normal index. In this article, we test the behavior and suitability of different biotic indices proposed under the perspective of the Water Framework Directive (S, H, AMBI, M-AMBI, BQI, W-statistic, Taxonomic distinctness) for the assessment of estuaries in northern Spain. The low species richness and dominance of a few tolerant species in the characteristic community of these estuaries presented a challenge to the application of the biotic indices tested. Combined approaches that integrate different aspects of water quality and ecosystem functionality could increase the reliability of the ecological assessment of these transitional waters.     

Prevalence and composition of fishing gear debris in the nests of northern gannets (Morus bassanus) are related to fishing effort

Bycatch and indirect mortality associated with global fishing operations affect non-target species. Northern gannets (Morus bassanus) and other seabirds incorporate marine debris, much of it originating in fisheries, into their nests, at times resulting in entanglement. We compared the prevalence and composition of marine debris in nests at two gannet colonies in Newfoundland before and after a basin-wide ground fish closure in 1992, and at the species' largest colony in the Gulf of St. Lawrence, where fishing effort is low. The proportion of nests with marine debris decreased following the fishery closure, and the proportion of nests with fishing gear was related exponentially to the number of gillnets set around breeding colonies. Assessing the composition of gannet nests could provide a useful index of the prevalence of fishing debris and could be used to assess entanglement risk of other animals in the marine environment over decadal scales.     

Plastic debris ingestion by marine catfish: an unexpected fisheries impact

Plastic marine debris is a pervasive type of pollution. River basins and estuaries are a source of plastics pollution for coastal waters and oceans. Estuarine fauna is therefore exposed to chronic plastic pollution. Three important catfish species [Cathorops spixii (N = 60), Cathorops agassizii (N = 60) and Sciades herzbergii (N = 62)] from South Western Atlantic estuaries were investigated in a tropical estuary of the Brazilian Northeast in relation to their accidental ingestion of plastic marine debris. Individuals from all three species had ingested plastics. In C. spixii and C. agassizii, 18% and 33% of individuals had plastic debris in their stomachs, respectively. S. herzbergii showed 18% of individuals were contaminated. All ontogenetic phases (juveniles, sub-adults and adults) were contaminated. Nylon fragments from cables used in fishery activities (subsistence, artisanal and commercial) played a major role in this contamination. These catfish spend their entire life cycles within the estuary and are an important feeding resource for larger, economically important, species. It is not yet possible to quantify the scale and depth of the consequences of this type of pollution. However, plastics are well known threat to living resources in this and other estuaries. Conservation actions will need to from now onto take plastics pollution into consideration.     

Swimming behavior of juvenile silver carp near the separation zone of a channel confluence

Knowledge of locomotion of fish near river confluences is important for prediction of fish distribution in a river network.The flow separation zone near the confluence of a river network is a favorite habitat and feeding place for silver carp,which is one of the four major species of Chinese carp and usually provides positive rheotaxis to water flow.In the current study,a series of laboratory experiments were done to determine the behavioral responses of juvenile silver carp to the hydrodynamic ...