Fish communities in New Zealand rivers and their relationship to environmental variables

Fish abundance data from selected electric‐fishing records in the New Zealand Freshwater Fish Database (NZFFD) were used to identify riverine fish communities and to examine their relationship to environmental variables included in the NZFFD. Only 21 fish species, 18 native species, and three introduced salmonids, were present at 1% or more of the sites. We defined 12 fish communities characterised by a dominant species: two salmonid communities, two non‐diadromous native communities, and eight communities characterised by diadromous native species. Altitude and distance inland were the two most significant variables, reflecting differences between communities dominated by diadromous and non‐diadromous species. The next most important variables were related to the geographic location of the site. Other environmental variables that were highly correlated with the fish community assignments were stream width and percentage of native forest or farming land use in the catchment upstream of the site. Of the local habitat variables, percentage of cascade habitat and percentage of sand substrate were the most important discriminators between communities. Despite having only a limited set of broad‐scale environmental variables, we achieved 47% success in the prediction of community membership using multiple discriminant analysis, with another 21% of sites being near misses. A greater knowledge of barriers to migration of diadromous species and fine‐scale variables describing in‐stream habitat would probably increase the predictive ability of the model, although collection of such data is time consuming and therefore impractical on a national scale.     

Modelling the spatial distribution of plaice (Pleuronectes platessa), sole (Solea solea) and thornback ray (Raja clavata) in UK waters for marine management and planning

Species distribution maps are needed for ecosystem-based marine management including the development of marine spatial plans. If such maps are based on predictive models then modelling procedures should aim to maximise validation success, and any uncertainty in the predictions needs to be made explicit. We developed a predictive modelling approach to produce robust maps of the distributions of selected marine species at a regional scale. We used 14 years of survey data to map the distributions of plaice, sole and thornback ray in three hydrographic regions comprising parts of the Irish Sea, Celtic Sea and the English Channel with the help of the hybrid technique regression kriging, which combines regression models with geostatistical tools. For each species–region combination we constructed logistic Generalized Linear Models (GLMs) based on presence–absence data using the environmental variables: depth, bottom temperature, bed shear stress and sediment type, as predictors. We selected GLMs using the mean squared error of prediction (MSEP) estimated by cross-validation then conducted a geostatistical analysis of the residuals to incorporate spatial structure in the predictions. In general, we found that species occurrence was positively related to shallow areas, a bed shear stress of between 0 and 1.5 N/m², and the presence of sandy sediment. Predicted species occurrence probabilities were in good agreement with survey observations. This modelling framework selects environmental models based on predictive ability and considers the effect of spatial autocorrelation on predictions, together with the simultaneous presentation of observations, associated uncertainties, and predictions. The potential benefit of these distribution maps to marine management and planning is discussed.     

Reduced abundance of banded kokopu (Galaxias fasciatus) and other native fish in turbid rivers of the North Island of New Zealand

Laboratory experiments demonstrated that migrant juvenile banded kokopu (Galaxias fasciatus Gray) were more sensitive to suspended sediment (SS) than other native fish species. If juvenile migrants avoid waters made turbid by SS and their recruitment to adult habitats up stream is reduced, then adult abundance may decline in turbid rivers. To test this, we compared the abundance of diadromous native fish between turbid and clear rivers. The duration (% time) for which SS concentrations exceeded 120 mg litre^‐1 (a critical level from laboratory experiments) during the migration season (August‐December) was estimated for over 150 New Zealand river sites. Turbid rivers were defined as those where SS concentrations exceeded 120 mg litre^‐1 for over 20% of the time and clear rivers as those where SS concentrations exceeded 120 mg litre^‐1 for less than 10% of the time. Eight turbid rivers and seven clear ones were identified where sufficient data on SS and native fish populations existed to permit a comparison. The mean occurrence of banded kokopu was reduced by 89.5% in turbid rivers and, although other diadromous fish species were also less common, banded kokopu was most affected. Densities of adult banded kokopu were also significantly lower in optimal stream habitats in three turbid compared with three matched clear rivers. We therefore concluded that the abundance of adult banded kokopu was reduced in turbid rivers and propose that this is because of reduced recruitment of juveniles in turbid rivers.     

Diadromy and longitudinal patterns of upstream penetration of freshwater fish in Taranaki,New Zealand

Diadromous fish species dominate the New Zealand freshwater fish fauna and make up 15 of the 17 native fish species found on the Taranaki Ring Plain. Trajectories of occurrence in relation to elevation and distance from the sea are described for 11 diadromous and 2 non‐diadromous species using data from the New Zealand Freshwater Fish Database and data collected over the summer of 1997/ 98. Distinctive distributions were found for most of the species related to their differing migratory strategies and abilities. The species were ranked based on components of these trajectories to compare their penetrative ability. Comparison of the ranking methods used revealed they produced similar results. The ranking of the 11 diadromous species in Taranaki relative to each other revealed similar rankings to those for the same species from the West Coast of the South Island. The non‐migratory native fish, Cran's bully (Gobiomorphus basalis), was not found on the western side of the mountain. This distribution is thought to be the result of the local extinction of non‐migratory species in high gradient or unstable streams.     

Emigrating larvae of koaro,Galaxias brevipinnis Günther (Teleostei: Galaxiidae), from the Otira River,New Zealand

Fish larvae were collected in stream benthic invertebrate drift nets from the Otira River, near Arthur's Pass, New Zealand during a study of benthic drift. They are identified as probably those of koaro (Galaxias brevipinnis Gunther) on the basis of estimates of myomere counts (indicating Galaxiidae or Retropinnidae); by a process of elimination of likely species on the basis of distance up stream, elevation, and habitat characteristics; and by determining fish species in the Otira River tributaries upstream of the sampling location. This comprises the first likely record of emigrating larvae of koaro, a species known to be diadromous by the return migrations from the sea of whitebait juveniles during spring. A newly hatched larva of koaro is described and figured.     

Remediation of a major acid mine drainage point source discharge restores headwater connectivity for a diadromous native fish

Rivers receiving acid mine drainage (AMD) are frequently depauperate in fish and impacts may extend long distances downstream. AMD inputs may form chemical barriers for migratory species and isolate fish in unimpacted headwaters. We investigated the response of a diadromous fish, kōaro (Galaxias brevipinnis), to remediation of an AMD tributary in a 5th order river in New Zealand. A 2005 survey indicated limited recruitment of kōaro in the river likely due to the chemical barrier of AMD. By 2010, water treatment in the contaminated tributary had raised pH from a median value of 4.3 to 6 and reduced metals in the lower river, notably aluminium from a median of 2.48 to 0.41?mg/L. In 2012, kōaro density had increased by an order of magnitude relative to 2005. Furthermore, a greater proportion of juvenile fish were present. These results indicate that large-scale remediation of discharges can reverse the impacts of AMD on fish migration.     

Impact of estuary barrage construction on fish assemblages in the lower part of a river and the role of fishways as a passage

The construction of an estuary barrage, an instream structure in the lower reaches of a river, causes significant physical changes in water flow patterns and river morphology, and results in altered environmental conditions. Here, we examined the impact of the Geum River estuary barrage, completed in 1990, on fish assemblages by using a literature search and fresh surveys of fishways in the barrage. We found that fish assemblages upstream and downstream of the barrage were altered following its completion. After construction, more species were found in the freshwater area, with a particularly great increase in freshwater species. Conversely, estuarine and marine species were only consistently caught in the downstream salt-water area, although the number of species increased. In total, 15,829 fish from 47 species and 20 families were identified at the three types (pool and weir, rubble type, and boat passage) of fishways in the barrage. The dominant species were Chelon haematocheilus, an estuarine species, Coilia nasus, a diadromous species, and Erythroculter erythropterus, a freshwater species. The mean total length of fish (101.9 ± 76.0 mm) in the boat passage fishway was approximately 100 mm lesser than those in the pool and weir (207.2 ± 112.8 mm) and rubble type (205.8 ± 112.7 mm) fishways. The boat passage fishway was the most efficient for fish movements. The current fishway system is not sufficient for fish migration, and thus additional ways are required to improve the system such as the boat passage. Few estuarine or diadromous species were found in both freshwater and salt-water areas, but freshwater fishes that accidently moved to salt-water area actively used fishways. Therefore, fishway management in the Geum River estuary barrage has to focus on freshwater fish; however, this may need to change to a focus on migratory fishes depending on ecological life cycles of migratory fish.     

Differences in the distributions of freshwater fishes and decapod crustaceans in urban and forested streams in Auckland,New Zealand

Using data from existing studies, assemblages of freshwater fishes and decapod crustaceans were examined at 39 sites in urbanised catchments and 57 sites in forested (reference) catchments within the greater Auckland region, New Zealand. Eleven native and 1 exotic fish species and 2 native decapod crustacean species were recorded. Species richness and fish Index of Biotic Integrity (IBI) scores were lower overall in streams in urbanised catchments. Shortfin eel (Anguilla australis) and mosquitofish (Gambusia affinis) were more dominant in urban streams; all other commonly occurring species were found significantly more often in reference streams. Non‐diadromous native species (Cran's bully (Gobiomorphus basalts) and freshwater crayfish (Paranephrops planifions)) were absent from urban streams, but relatively abundant in reference streams. This absence of non‐diadromous species, together with the urban occurrence of five diadromous species suggests that migratory barriers pose less of a threat to freshwater communities than physico‐chemical disturbance in streams in the Auckland urban region.     

Gradient responses of epilithic diatom communities in the Baltic Sea proper

Diatom communities and assemblages are widely used as indicators of ecological change in aquatic environments and for reconstructing palaeo-environments. Good calibration data sets, directly linking changes in diatom composition to environmental factors, are needed for building reliable gradient models with high indicative value. Such models have a broad applicability because most diatom species have cosmopolitan distributions. This paper presents community analyses of brackish-water diatoms living on submerged stones in four areas of the Baltic Sea proper along the Swedish coast. The communities on the stones were composed of epilithic, epiphytic, epipelic, epipsammic and occasionally some pelagic species. Altogether, 158 quantitative samples were taken at 41 sites between 23 April and 11 May, 1990, and the data set contained 300 diatom taxa belonging to 75 genera. Species data were analysed with principal components analysis (PCA) and environmental factors were fitted passively by multiple regression analysis on the ordination results. Differences in community composition could be explained by variation in salinity (which was correlated with N:P and Si:P ratios and the occurrence of macroalgae on the stones), nutrient concentrations and variation in exposure to wave action (which was correlated to the occurrence of soft bottoms around the stones, water temperature and the occurrence of sand grains and macroalgae on the stones). Separate analyses for small taxa (cell biovolume <1000 μm³), for large taxa (cell biovolume ≥1000 μm³) and for small and large diatom taxa together showed that diatoms of different size classes respond differently to environmental variation.     

Species–environment relationships and potential for distribution modelling in coastal waters

Due to increasing pressure on the marine environment there is a growing need to understand species–environment relationships. To provide background for prioritising among variables (predictors) for use in distribution models, the relevance of predictors for benthic species was reviewed using the coastal Baltic Sea as a case-study area. Significant relationships for three response groups (fish, macroinvertebrates, macrovegetation) and six predictor categories (bottom topography, biotic features, hydrography, wave exposure, substrate and spatiotemporal variability) were extracted from 145 queried peer-reviewed field-studies covering three decades and six subregions. In addition, the occurrence of interaction among predictors was analysed. Hydrography was most often found in significant relationships, had low level of interaction with other predictors, but also had the most non-significant relationships. Depth and wave exposure were important in all subregions and are readily available, increasing their applicability for cross-regional modelling efforts. Otherwise, effort to model species distributions may prove challenging at larger scale as the relevance of predictors differed among both response groups and regions. Fish and hard bottom macrovegetation have the largest modelling potential, as they are structured by a set of predictors that at the same time are accurately mapped. A general importance of biotic features implies that these need to be accounted for in distribution modelling, but the mapping of most biotic features is challenging, which currently lowers the applicability. The presence of interactions suggests that predictive methods allowing for interactive effects are preferable. Detailing these complexities is important for future distribution modelling.     

Effects of sediment on fish communities in East Cape streams,North Island,New Zealand

We examined the effects of sediment on fish communities at 38 sites in the East Cape region of New Zealand. Many streams in this region are subject to high sediment loads, a natural situation that has been exacerbated by the conversion of native forest to pasture. The fish community consisted of diadromous native species common throughout New Zealand that require access to and from the sea. We found that site altitude and distance inland were important factors in determining the abundance and composition of the fish community. We used four measures as indices of sediment load: suspended sediment concentration, median substrate size, substrate stability, and the ratio of the wetted width to the width of the active (non‐vegetated) stream channel. Although all indices were correlated, the ratio of wetted width to width of active channel was most closely related to fish abundance and diversity. Fish abundance and diversity reduced as sediment load increased among streams, with up to nine fish species in streams with low sediment loads and only two species in streams with high sediment loads. In‐stream habitat also varied with sediment load; as load increased, depth and substrate size decreased and velocity increased. These results suggest that activities that increase sediment loads in rivers will have a negative impact on native fish communities in New Zealand.     

Inter- and intra-estuarine fish assemblage variability patterns along the Portuguese coast

Estuaries along the Portuguese coast differ considerably in terms of their structure, geomorphologic and hydrologic characteristics. They play an important ecological role for different fish species, namely acting as important nursery areas. The fish assemblages of nine estuaries of the Portuguese coast were investigated in order to evaluate their main inter- and intra-estuarine variability patterns. Fish sampling surveys were conducted in May and July 2006, covering the full estuarine gradient. The different saline areas in each estuary were mapped using a Geographic Information System and fish assemblages’ were described and compared using a functional guilds approach. Generalized linear models were used to relate fish species richness to geomorphologic, hydrologic and environmental characteristics of the estuaries considered and correspondence analyses were performed to evaluate similarities in fish assemblages’ structure. At a large scale, river flow was the most important factor explaining the variability in species richness in estuaries along the Portuguese coast. At a regional scale, different abiotic factors explained the occurrence and abundance of fish species in the estuaries. Nonetheless, the overall role of the estuary was strongly related with the dominant saline zone within each estuary.     

Development of habitat models for Nephtys species (Polychaeta: Nephtyidae) in the German Bight (North Sea)

The aim of the study was the development of habitat models for Nephtys species (Polychaeta: Nephtyidae). The investigation area was the German Bight, the southeastern part of the North Sea. Models were developed based on field data collected between 2000 and 2006. In addition, data on environmental variables were retrieved from long-term monitoring data sets and from the sediment map by Figge [Figge, K., 1981. Nordsee. Sedimentverteilung in der Deutschen Bucht. Map No. 2900. Publisher: Deutsches Hydrographisches Institut, Hamburg]. The statistical modelling technique used was multivariate adaptive regression splines (MARS). Models were fitted individually for each species. Evaluation of predictive discrimination and predictive accuracy of the developed models was by calculation of the area under the receiver operating curve (AUC) or sensitivity and specificity, respectively. Habitat models with best predictive fit were selected for the presentation of habitat suitability maps.Six Nepthys species were found: Nephtys assimilis, N. caeca, N. cirrosa, N. hombergii, N. incisa and N. longosetosa. N. hombergii was most common whereas N. incisa and N. longosetosa were rare. Habitat preferences varied considerably among the species. For all investigated Nephtys species except N. longosetosa a habitat model could be developed based on four predictor variables. The habitat models with best predictive fit were those for N. cirrosa and N. hombergii. The N. caeca habitat model was of limited predictive accuracy and only accept predictive discrimination. The number of predictors as well as the relative importance of the respective predictors in the model varied among the different species. Direct comparison of most suitable habitats for the different species based on modelling revealed that in the mostly sandy regions parallel to the German coast in water depths up to 20 m an overlap between N. caeca, N. hombergii and N. cirrosa exists. In the deeper central German Bight with mostly fine sands with increased mud contents N. hombergii, N. assimilis and, at least partially and rare in numbers, N. incisa co-occur. It can be concluded that important sediment characteristics like grain size median and mud content as well as water depth and mean salinity are useful parameters to describe the habitat requirements of most Nepthys species in the German Bight. However, additional variables need to be incorporated into such analyses.     

Development of habitat models for Nephtys species (Polychaeta: Nephtyidae) in the German Bight (North Sea)

The aim of the study was the development of habitat models for Nephtys species (Polychaeta: Nephtyidae). The investigation area was the German Bight, the southeastern part of the North Sea. Models were developed based on field data collected between 2000 and 2006. In addition, data on environmental variables were retrieved from long-term monitoring data sets and from the sediment map by Figge [Figge, K., 1981. Nordsee. Sedimentverteilung in der Deutschen Bucht. Map No. 2900. Publisher: Deutsches Hydrographisches Institut, Hamburg]. The statistical modelling technique used was multivariate adaptive regression splines (MARS). Models were fitted individually for each species. Evaluation of predictive discrimination and predictive accuracy of the developed models was by calculation of the area under the receiver operating curve (AUC) or sensitivity and specificity, respectively. Habitat models with best predictive fit were selected for the presentation of habitat suitability maps.Six Nepthys species were found: Nephtys assimilis, N. caeca, N. cirrosa, N. hombergii, N. incisa and N. longosetosa. N. hombergii was most common whereas N. incisa and N. longosetosa were rare. Habitat preferences varied considerably among the species. For all investigated Nephtys species except N. longosetosa a habitat model could be developed based on four predictor variables. The habitat models with best predictive fit were those for N. cirrosa and N. hombergii. The N. caeca habitat model was of limited predictive accuracy and only accept predictive discrimination. The number of predictors as well as the relative importance of the respective predictors in the model varied among the different species. Direct comparison of most suitable habitats for the different species based on modelling revealed that in the mostly sandy regions parallel to the German coast in water depths up to 20 m an overlap between N. caeca, N. hombergii and N. cirrosa exists. In the deeper central German Bight with mostly fine sands with increased mud contents N. hombergii, N. assimilis and, at least partially and rare in numbers, N. incisa co-occur. It can be concluded that important sediment characteristics like grain size median and mud content as well as water depth and mean salinity are useful parameters to describe the habitat requirements of most Nepthys species in the German Bight. However, additional variables need to be incorporated into such analyses.     

Explaining island‐wide geographical patterns of Caribbean fish diversity: A multi‐scale seascape ecology approach

Geographical patterning of fish diversity across coral reef seascapes is driven by many interacting environmental variables operating at multiple spatial scales. Identifying suites of variables that explain spatial patterns of fish diversity is central to ecology and informs prioritization in marine conservation, particularly where protection of the highest biodiversity coral reefs is a primary goal. However, the relative importance of conventional within‐patch variables versus the spatial patterning of the surrounding seascape is still unclear in the ecology of fishes on coral reefs. A multi‐scale seascape approach derived from landscape ecology was applied to quantify and examine the explanatory roles of a wide range of variables at different spatial scales including: (i) within‐patch structural attributes from field data (5 × 1 m² sample unit area); (ii) geometry of the seascape from sea‐floor maps (10–50 m radius seascape units); and wave exposure from a hydrodynamic model (240 m resolution) for 251 coral reef survey sites in the US Virgin Islands. Non‐parametric statistical learning techniques using single classification and regression trees (CART) and ensembles of boosted regression trees (TreeNet) were used to: (i) model interactions; and (ii) identify the most influential environmental predictors from multiple data types (diver surveys, terrain models, habitat maps) across multiple spatial scales (1–196,350 m²). Classifying the continuous response variables into a binary category and instead predicting the presence and absence of fish species richness hotspots (top 10% richness) increased the predictive performance of the models. The best CART model predicted fish richness hotspots with 80% accuracy. The statistical interaction between abundance of living scleractinian corals measured by SCUBA divers within 1 m² quadrats and the topographical complexity of the surrounding sea‐floor terrain (150 m radius seascape unit) measured from a high‐resolution terrain model best explained geographical patterns in fish richness hotspots. The comparatively poor performance of models predicting continuous variability in fish diversity across the seascape could be a result of a decoupling of the diversity‐environment relationship owing to structural degradation leading to a widespread homogenization of coral reef structure.     

Distribution of benthic marine invertebrates at northern latitudes ― An evaluation applying multi-algorithm species distribution models

Different techniques of species distribution modeling were applied to evaluate the distribution of eight benthic marine species in Icelandic waters. The species examined were Symplectoscyphus tricuspidatus, Stegopoma plicatile (both Hydrozoa), Prionospio cirrifera, Amphicteis gunneri (both Polychaeta), Desmosoma strombergi, Eurycope producta (both Isopoda), Andaniella pectinata and Harpinia crenulata (both Amphipoda). Information on 13 environmental variables (temperature mean, temperature mean SD, temperature minimum, temperature maximum, salinity mean, salinity mean SD, oxygen content, particulate organic carbon, seasonal variation index, bottom roughness, sediment thickness, acidification) and records of occurrences of these eight species was collated in an ArcGIS project. Modeling methods applied were MARS, TreeNet, and MaxENT. According to area under the receiver operating curve (AUC) model assessment values, models with moderate to outstanding discriminatory power were found for all species. There was a good overlap in the overall pattern of prediction for most species independent on the modeling technique. Among the three applied techniques MARS seemed to generalize most whereas TreeNet predictions very precisely reflected information from the training data set. The distribution of the selected benthic invertebrate species in Icelandic waters could be linked to a variety of environmental factors related to oceanography, seabed topography and human impact. Their multivariate interactions acted as a structuring force of species distribution, instead of just their one by one individual influence. The selected predictors varied between the different models for the same species. They substituted each other in different models. The expected distribution of the examined species was mapped for a seascape of known environmental settings. Such maps will serve as excellent references in future impact studies and enable the detection of changes in the distribution of benthic marine invertebrates.     

Habitat use and longitudinal distribution patterns of native fish from a near pristine Stewart Island,New Zealand,stream

Distribution, abundance, and habitat preferences of native fish were investigated down the length of a relatively pristine, medium‐sized, fourth‐order stream on Stewart Island, New Zealand. A limited fish fauna was recorded (six species), including three threatened large galaxiid species (Galaxias argenteus, Galaxias fasciatus, and Galaxias brevipinnis), which have restricted distributions on mainland New Zealand. Results indicated that these large galaxiids occupy diverse habitats including pools and backwaters within the mainstems of this stream. Their extensive distributions and wide habitat usage were attributed to factors such as the intact catchment vegetation, unmodified stream channel, and the absence of introduced fishes, particularly salmonids. Results suggest that some native species have been excluded from mainstem habitats elsewhere in New Zealand. It was also evident that interactions among the native species influenced habitat use; G. brevipinnis avoided backwaters, runs, and pools in reaches occupied by G. fasciatus and Anguilla dieffenbachii; whereas G. fasciatus appeared to avoid habitats occupied by G. argenteus and A dieffenbachii. Maximum densities and biomass of galaxiids and eels occurred in deepwater habitats (>0.75 m). Furthermore the fish inhabiting these deeper waters were larger and more likely to be female. These findings have significant implications for the design and application of sampling protocols for native New Zealand fishes and for the protection of their habitats. If deeper waters are not sampled then species, sex, and size biased data may result.     

Nursery use patterns of commercially important marine fish species in estuarine systems along the Portuguese coast

Analysing the estuarine use patterns of juveniles of marine migrant fish species is vital for identifying important sites for juveniles as well as the basic environmental features that characterize these sites for different species. This is a key aspect towards understanding nursery function. Various estuarine systems along the Portuguese coast (Minho, Douro, Ria de Aveiro, Mondego, Tejo, Sado, Mira, Ria Formosa and Guadiana) were sampled during Spring and Summer 2005 and 2006. Juveniles of commercially important marine fish species Solea solea, Solea senegalensis, Platichthys flesus, Diplodus vulgaris and Dicentrarchus labrax, predominantly 0-group individuals, were amongst the most abundant species and had distinct patterns of estuarine use as well as conspicuous associations with several environmental features. Juvenile occurrence and density varied amongst estuaries and sites within them, and differed with species. Sites with consistently high juvenile densities were identified as important juvenile sites (i.e. putative nursery grounds). Through generalized linear models (GLM), intra-estuarine variation in occurrence and density of each of the individual species was largely explained by environmental variables (temperature; salinity; depth; percentage of mud in the sediment; presence of seagrass; importance of intertidal areas; relative distance to estuary mouth; macrozoobenthos densities; and latitude). Decisive environmental factors defining important sites for juveniles varied depending on the system as a result of different environmental gradients, though there were common dominant features for each species regardless of the estuary considered. Analysed environmental variables in the GLM also accounted for inter-estuarine variation in species' occurrence and density. In several estuaries, the identified important juvenile sites were used by many of these species simultaneously and may be of increased value to both management and conservation. Overall, the variability in site features amongst estuaries highlighted the tolerance of these species to different available environmental conditions and provided fundamental information for future spatially explicit modelling of their distribution. This should ultimately enable the prediction of species response to habitat alterations.     

Co-occurrence of demersal fishes in a tropical bay in southeastern Brazil: A null model analysis

Co-occurrence of demersal fishes was assessed in a tropical bay in southeastern Brazil along an environmental gradient (inner, middle, and outer zones), defined according to depth and salinity. The aim was to test whether fish species are distributed randomly and independently of one another in accordance with a null model. The unconstrained null hypothesis for occurrence of a given species by chance in relation to other species was accepted for each zone separately, and rejected for the bay as a whole, for the full year and for each season separately, except summer. Findings of the environmentally constrained null models, which predict species presence or absence as a function of environmental conditions, were not significant, suggesting that the environmental variables we chose are not key factors for these species and that biotic interactions between species are not strong when species–environment relationships are considered. The partition of available resources inside each zone and fish movements along the three zones during summer may have contributed to higher fish species co-occurrence. Habitat segregation in the bay during the remaining seasons could explain the pattern of reduced co-occurrence, indicating the presence of two fish assemblages associated with different environmental characteristics.     

A standardised sampling protocol for robust assessment of reach-scale fish community diversity in wadeable New Zealand streams

The New Zealand fish fauna contains species that are affected not only by river system connectivity, but also by catchment and local-scale changes in landcover, water quality and habitat quality. Consequently, native fish have potential as multi-scale bioindicators of human pressure on stream ecosystems, yet no standardised, repeatable and scientifically defensible methods currently exist for effectively quantifying their abundance or diversity in New Zealand stream reaches. Here we report on the testing of a back-pack electrofishing method, modified from that used by the United States Environmental Protection Agency, on a wide variety of wadeable stream reaches throughout New Zealand. Seventy-three first- to third-order stream reaches were fished with a single pass over 150–345 m length. Time taken to sample a reach using single-pass electrofishing ranged from 1–8 h. Species accumulation curves indicated that, irrespective of location, continuous sampling of 150 stream metres is required to accurately describe reach-scale fish species richness using this approach. Additional species detection beyond 150 m was rare (<10%) with a single additional species detected at only two out of the 17 reaches sampled beyond this distance. A positive relationship was also evident between species detection and area fished, although stream length rather than area appeared to be the better predictor. The method tested provides a standardised and repeatable approach for regional and/or national reporting on the state of New Zealand's freshwater fish communities and trends in richness and abundance over time.