Riparian management affects instream habitat condition in a dairy stream catchment

Using a space-for-time substitution design, we investigated the response of structural instream habitat and fish populations to different riparian management practices throughout a Dairy Best Practice Catchment. We found a significant negative correlation between the upstream area of stock exclusion fencing and deposited instream fine sediment cover. Furthermore, we determined that this relationship emerges when ≥300?m lengths of upstream riparian area were included in the analysis, indicating the scale at which stock exclusion fencing results in a positive instream habitat response. Specifically, for this historically degraded spring-fed stream, our findings indicate that riparian segments with 5 m wide stock exclusion fences (both banks) are required to achieve instream fine sediment cover below 20% in downstream reaches. Fish were sparse and evenly spread throughout the catchment. Fish distributions were not correlated with reach-scale riparian or instream habitat variables, possibly because the available habitat quality gradient was too narrow.     

In‐stream habitat suitability criteria for feeding inanga (Galaxias maculatus)

Inanga (Galaxias maculatus Jenyns) are the basis of an important recreational and commercial freshwater fishery that has declined over the past 100 years, probably because of habitat degradation in developed areas. Maintenance of suitable stream flows for inanga is one means of protecting the fishery. Observations of habitat use by drift‐feeding inanga were made in three streams. Most feeding inanga were stationary in the current taking food items from the drift and sometimes from the surface. Drift‐feeding locations were related to current patterns and water velocity, with inanga feeding at locations where the current concentrated food, and where water velocities were sufficiently low to allow the fish to hold position. The mean feeding velocity did not vary significantly between streams, although the range of velocities used did. Optimum feeding velocities were 0.03–0.07 m s^‐1, and were comparable with brown trout (Salmo trutta) feeding velocities, when adjusted for the differences in fish size. Depth use was very different between streams and this was attributed to the variation in available habitat. Depths greater than 0.3 m were optimum, with some use of depths between 0.1 and 0.3 m. It is suggested that inanga suitability criteria are dictated by biological factors, such as swimming ability and bio‐energetic requirements, rather than the river the fish is living in and that it is necessary to collect habitat use and availability data in a wide range of stream types to define optimal habitat and suitability criteria for generalised application.     

Land use,associated eel production,and abundance of fish and crayfish in streams in Waikato,New Zealand

Abstract

The density and biomass of fish and crayfish, and the production of eels, was compared among streams in native forest, exotic forest, and pasture. Populations were estimated by multiple‐pass electroshocking at 11 sites in hill‐country streams in the Waikato region, North Island. Three sites were in native forest, four in exotic forest, and four in pasture. Length of stream sampled at each site was 46–94 m (41–246 m² in area), and catchment areas up stream of the sites ranged from 0.44 to 2.01 km².

A total of 487 fish were caught. The species were longfinned and shortfinned eels, banded kokopu, Cran's and redfinned bullies, and common smelt. Eels were the most abundant fish in all three land‐use types, and shortfinned eels were more abundant at pastoral sites (mean density 1.11 fish m^?2) than longfinned eels (mean density 0.129 fish m^?2). Banded kokopu were present only at forested sites. Mean fish densities were greater at pastoral sites (1.55 fish m^?2) than under either native forest (0.130 fish m^?2) or exotic forest (0.229 fish m^?2). Mean fish biomass was also greater at pastoral sites (89.7 g m^?2) than under native forest (12.8 g m^?2) or exotic forest (19.3 g m^?2). Longfinned eels made a greater contribution to the fish biomass at all sites than did shortfinned eels. Densities of crayfish were high (0.46–5.40 crayfish m^?2), but were not significantly different between land‐use types. Crayfish biomass ranged from 1.79 to 11.2 g m^?2. Total eel production was greater at pastoral sites (mean 17.9 g m^?2 year¹) than at forest sites (mean 2.39 gm^?2 year^?1).     

Effects of turbidity on the migration of juvenile banded kokopu (Galaxias fasciatus) in a natural stream

Laboratory experiments have shown that the juvenile migratory stage of banded kokopu (Galaxias fasciatus (Gray 1842)) is more sensitive to turbidity than other native fish species and avoids turbidity levels of >25 nephelometric turbidity units (NTU). Field trials using juvenile fish collected from the Tarawera River and Hays Stream, New Zealand, were used to test the results from these laboratory experiments by measuring the effects of turbidity on the migration direction and rate for banded kokopu in a natural stream setting. In the stream setting, neither the migration rate nor the migration direction were affected at turbidity <25 NTU. At higher turbidity levels, significantly fewer fish migrated up stream within a given time period. Because there was rarely any downstream movement, this suggests the fish either halted or slowed their upstream movement. A slower rate of migration could result in fewer juveniles reaching adult habitat, and would account for the reduced abundance of adult banded kokopu in rivers that are turbid during the migration season. Achieving turbidity levels of <25 NTU in rivers and streams during the migration season would therefore help maintain upstream migrations and populations of banded kokopu, and hence other native fish species.     

Summer spatial patterns of the fish community in a large,shallow, turbid coastal lake

Several water quality parameters, marginal vegetation, and the fish community in Lake Ellesmere, a large, shallow, turbid lake situated on the east coast of the South Island, New Zealand, were sampled along selected transects in late summer to determine species spatial patterns. Thirteen species offish were caught, with seven of them comprising major populations, although only four of these were adequately sampled by the method used—they included inanga (Galaxias maculatus), common smelt {Retropinna retropinna), shortfinned eel (Anguilla australis), and common bully (Gobiomorphus cotidianus). Inanga were almost exclusively confined to areas on the western side of the lake which has a convoluted shoreline with a variety of small embayments with scattered vegetation along the margins. Common smelt occupied both marginal and offshore areas, but they too were more abundant along the margins particularly on the western side. Both the common bully and shortfinned eel were widespread and abundant in the lake, although their abundance and biomass were higher within the vicinity of the lake outlet, major inflowing tributaries, and other marginal habitats. All three species of flounders of the genus Rhombosolea were poorly represented in our samples. However, in commercial catches they were reasonably abundant, with the sand flounder (R. plebeia) and yellowbelly (R. leporina) being more common in offshore than inshore catches, whereas the black flounder (R. retiaria) showed no difference in the catches between areas. Our overall findings are consistent with the hypothesis that bottom‐dwelling species (eels, bullies, flounders) are more widely distributed than free‐swimming forms (inanga, common smelt), which were largely confined to areas sheltered from prevailing winds. The highly turbid nature of the lake, primarily because of re‐suspension of fine bottom sediments by frequent winds, is considered an important factor in the distribution of the fish fauna.     

Reduced abundance of banded kokopu (Galaxias fasciatus) and other native fish in turbid rivers of the North Island of New Zealand

Laboratory experiments demonstrated that migrant juvenile banded kokopu (Galaxias fasciatus Gray) were more sensitive to suspended sediment (SS) than other native fish species. If juvenile migrants avoid waters made turbid by SS and their recruitment to adult habitats up stream is reduced, then adult abundance may decline in turbid rivers. To test this, we compared the abundance of diadromous native fish between turbid and clear rivers. The duration (% time) for which SS concentrations exceeded 120 mg litre^‐1 (a critical level from laboratory experiments) during the migration season (August‐December) was estimated for over 150 New Zealand river sites. Turbid rivers were defined as those where SS concentrations exceeded 120 mg litre^‐1 for over 20% of the time and clear rivers as those where SS concentrations exceeded 120 mg litre^‐1 for less than 10% of the time. Eight turbid rivers and seven clear ones were identified where sufficient data on SS and native fish populations existed to permit a comparison. The mean occurrence of banded kokopu was reduced by 89.5% in turbid rivers and, although other diadromous fish species were also less common, banded kokopu was most affected. Densities of adult banded kokopu were also significantly lower in optimal stream habitats in three turbid compared with three matched clear rivers. We therefore concluded that the abundance of adult banded kokopu was reduced in turbid rivers and propose that this is because of reduced recruitment of juveniles in turbid rivers.     

Habitat use and longitudinal distribution patterns of native fish from a near pristine Stewart Island,New Zealand,stream

Distribution, abundance, and habitat preferences of native fish were investigated down the length of a relatively pristine, medium‐sized, fourth‐order stream on Stewart Island, New Zealand. A limited fish fauna was recorded (six species), including three threatened large galaxiid species (Galaxias argenteus, Galaxias fasciatus, and Galaxias brevipinnis), which have restricted distributions on mainland New Zealand. Results indicated that these large galaxiids occupy diverse habitats including pools and backwaters within the mainstems of this stream. Their extensive distributions and wide habitat usage were attributed to factors such as the intact catchment vegetation, unmodified stream channel, and the absence of introduced fishes, particularly salmonids. Results suggest that some native species have been excluded from mainstem habitats elsewhere in New Zealand. It was also evident that interactions among the native species influenced habitat use; G. brevipinnis avoided backwaters, runs, and pools in reaches occupied by G. fasciatus and Anguilla dieffenbachii; whereas G. fasciatus appeared to avoid habitats occupied by G. argenteus and A dieffenbachii. Maximum densities and biomass of galaxiids and eels occurred in deepwater habitats (>0.75 m). Furthermore the fish inhabiting these deeper waters were larger and more likely to be female. These findings have significant implications for the design and application of sampling protocols for native New Zealand fishes and for the protection of their habitats. If deeper waters are not sampled then species, sex, and size biased data may result.     

Diet of giant kokopu,Galaxias argenteus

The stomach contents of 105 preserved specimens of giant kokopu, Galaxias argenteus (Gmelin 1789), collected from various locations around New Zealand between c. 1963 and 1994, were used to investigate giant kokopu diet. A total of 76 food taxa, predominantly invertebrates, were identified and categorised as either of aquatic or terrestrial origin from the 91 stomachs that contained food items. Aquatic Trichoptera, Gastropoda, and Hemiptera comprised 29.1, 12.6, and 14.4% by abundance respectively, and terrestrial Coleoptera 12.2% by abundance. Adult terrestrial Coleoptera were the most commonly occurring taxa, and were found in 59% of the stomachs that contained food. Food items of aquatic origin occurred in 94.5% of the giant kokopu stomachs that contained food and comprised 74.9% of the items by abundance. Although fewer items of terrestrial origin were encountered, they nevertheless appeared to be a significant component of the diet, and occurred in 83.5% of the giant kokopu stomachs that contained food, and comprised 25.1% of the items by abundance. Items of terrestrial origin occurred slightly more frequently in giant kokopu from lotic habitats than from lentic habitats. The significance of terrestrial food may be associated with giant kokopu preference for habitats with riparian cover. Fish also appeared to be a significant component of the diet, as 26% of the giant kokopu examined contained fish remains. Giant kokopu are probably best described as generalist feeders, as they utilise a wide range of foods of both aquatic and terrestrial origin.     

Spatial and temporal variation in the abundance and composition of ichthyoplankton in a large South Island,New Zealand river estuary

Larval and juvenile fish drifting on ebb tides were collected from early summer to mid autumn at various locations in the Taieri River and Waipori River estuary, South Island, New Zealand. A total of seven species of fish were recorded, however only three species were regularly collected. These were the larval common bully (Gobiomorphus cotidianus McDowall), larval inanga (Galaxias maculatus Jenyns), and postlarval cockabully (Tripterygion nigripenne Valenciennes). Common bully densities were highest in mid January, with the highest densities being recorded drifting out of Lake Waihola. Inanga densities were highest in March and April, with the highest densities being recorded in the channels draining wetland areas where extensive tidal inundation of riparian vegetation occurred. Cockabully were recorded from February to April, mostly at more downstream sites. Inland penetration by marine species was considerable, with two marine species, clingfish (Trachelochismus pinnulatus Forster) and smooth leatherjacket (Parika scaber Forster), being recorded c. 12 km upstream in late summer.     

Wood enhances crayfish (Paranephrops planifrons) habitat in a forested stream

The mechanisms of interaction between stream life and habitat are often complex and poorly understood. We explored the response of a freshwater crayfish (Paranephrops planifrons) to the functions of large wood with a view towards possible future use of wood in stream restoration in New Zealand. We compared three sub‐reach types within a native forest stream in the central North Island, New Zealand; complex wood‐rich, simple (straight) woodless, and geomorphically complex woodless. Stable logs embedded across the channel created considerable habitat heterogeneity, particularly diversity of substrate, water depths and velocities, that was associated with a significantly higher abundance and biomass of crayfish compared with a straight woodless reach. Although undercut banks in woodless sub‐reaches also supported abundant crayfish, wood increased the proportion of stream area used as habitat, apparently by providing surrogate edge habitat. Wood appeared to increase stream complexity by retaining streambed substrate and providing microhabitat with stable cover.     

Distribution of fish in tributaries of the lower Taieri/Waipori rivers,South Island,New Zealand

The distribution of fish within eight small streams feeding into the lower Taieri and Waipori Rivers on the east coast of New Zealand's South Island was examined. A total of eight native and two introduced species were recorded. Eels (Anguilla spp.) and giant kokopu (Galaxias argenteus Gmelin) were the most widely distributed species being located in all streams surveyed. Common bullies (Gobiomorphus cotidianus McDowall) and brown trout (Salmo trutta Linnaeus) were also widely distributed being detected in seven and six of the streams respectively. Three streams of potential conservation significance were identified. These were Picnic Gully Creek which contained a significant population of banded kokopu (Galaxias fasciatus Gray), a Category C threatened species, and Cullens and Alex Creeks which contained significant populations of giant kokopu, a Category B threatened species. The population of giant kokopu in Cullens and Alex Creeks currently represents the largest known population of this species on the east coast of New Zealand (excluding Southland). It has been suggested that brown trout may influence the distribution of native galaxiids. The longitudinal distribution of giant kokopu and brown trout in streams was examined at night using a continuous spotlight sampling approach. Distributions of these two species rarely overlapped at a local scale. Coarse habitat use data indicated that brown trout regularly occupied a variety of habitat types including modified agricultural channels. In contrast, giant kokopu rarely used agricultural channels being predominantly located in pool habitats.     

Water quality in a polluted lowland stream with chronically depressed dissolved oxygen: Causes and effects

Abstract

The Whangamaire Stream (North Island, New Zealand) has high concentrations of nitrate nitrogen (NO^? ₃‐N), biochemical oxygen demand (BOD₅), and Kjeldahl nitrogen (TKN) as a result of catchment land use practices. The lower reaches of the stream drain intensively farmed land and have dissolved oxygen (DO) levels of 10–50% saturation. The dominant riparian vegetation, Apium nodiflorum, provides a large organic loading by intercepting nutrients in run‐off and then decaying in the stream channel. Water quality and reaeration aspects of the stream were studied in order to explain the observed low DO levels. Measurements of the reaeration coefficient at 20°C, K₂ ²⁰, using methyl chloride (CH₃Cl) as a gas tracer, yielded values of 1.1–3.0 d^?1 for the upper part of the study reach and 15.5–16.2 d^?1 for the lower reach (overall average 12.5 ± 2.5 d^?1). These were in agreement with values inferred from single‐station diurnal curve analysis, which also showed that respiration was dominant in the lower reach where photo‐synthetic activity was inhibited by shade. The relatively large reaeration coefficients ensure that parts of the stream do not become anoxic at night time. Better riparian management and reduced nutrient inputs are likely to improve stream water quality.     

Stream channels are narrower in pasture than in forest

In the Hakarimata Range, west of Hamilton, New Zealand, second‐order streams appear to be wider in native than in pasture catchments, whereas streams in pine plantations (18 years old) appear to be suffering active stream‐bank erosion. A working hypothesis to explain these observations was that pasture vegetation replacing original forest encroaches on the stream channel, causing it to become narrower. To test the hypothesis, channel widths were measured up stream and down stream of “transitions” from native forest to pasture in 20 streams of different size in marginal ranges of the Waikato Basin. Small streams (catchment area <1 km², width in forest <2 m) were found to be half the width in pasture reaches as in forest. The degree of channel narrowing decreased as stream size increased and was minimal in large streams (catchment area >30 km², width in forest >10 m). This narrowing of stream channels implies that native forest clearance in New Zealand has reduced stream channel habitat. A concern regarding riparian planting for stream restoration is that sediment stored in pasture stream banks could be mobilised if grasses are extinguished by shading, resulting in turbid streamwater and sedimentation of fines in the channel.     

Notes on the presence of the brown mudfish (Neochanna apoda günther) on the west coast of the south Island of New Zealand

Two visits to the West Coast revealed that Neochanna apoda Giinther is present in six clearly defined types of habitat examined between Oparara and Whataroa.

The location of habitats varied from heavily forested country to open pakihi bog, between sea level and 200 m. A Neochanna apoda habitat was generally uninhabited by any other species of fish; occasionally short‐finned eels (Anguilla australis) and, once, banded kokopu (Galaxias fasciatus) were present. An association with freshwater crayfish (Paranephrops planifrons) was often noted.

Neochanna apoda was found in all stages of development from fry to adults over 150 mm in length, and all size ranges were present in some places.     

Growth,diet, movement,and abundance of adult banded kokopu (Galaxias fasciatus) in five Coromandel,New Zealand streams

Banded kokopu populations were surveyed seasonally over 1 year in five Coromandel streams to determine the influence of food supply on diet, growth, abundance, and movement. Streams with high benthic invertebrate abundance and drift of aquatic origin had high fish abundance. However, terrestrial drift was the dominant food for adult banded kokopu over all seasons and streams, on average comprising 75% of their diet by number and 89% by weight. Annual growth rates of tagged individuals ranged from 3 mm to 16.5 mm, with smaller fish growing faster than large fish. Low growth rates of large fish were consistent with the recapture of a fish that had only grown from 195 mm to 215 mm in 7 years. Our observations confirmed the strong association between banded kokopu, pool habitat, and cover, and also indicated that high fish abundance restricted growth rates and movement and increased interaction.     

Lethal concentrations of suspended solids for common native fish species that are rare in New Zealand rivers with high suspended solids loads

Abstract

Common native fish species that are rare in New Zealand rivers with high suspended solids (SS) concentrations were identified to determine which species were likely to be most affected by high SS concentrations. Mortality rates for the three most sensitive species (banded kokopu Galaxias fasciatus, redfin bully Gobiomorphus huttoni, common smelt Retropinna retropinnd) were measured over a range of SS concentrations to identify lethal concentrations. The survival of banded kokopu and redfin bully was not reduced by SS concentrations up to 43 000 g m^?3; however, the 24‐h survival of common smelt was reduced by SS concentrations over 1000 g m^?3, and its median lethal concentration (LC50) was close to 3000 g m^?3. SS concentrations over 3000 g m^?3 for more than 24 h will therefore reduce smelt but not affect the mortality of most other common native fish species. Although mortality from high concentrations of SS can account for the scarcity of smelt in rivers with high SS concentrations, mortality from high SS does not explain the scarcity of banded kokopu or redfin bully in such rivers. High turbidity (>20 nephelometric turbidity units) is known to limit the upstream migration and recruitment of juvenile banded kokopu in rivers with increased SS concentrations. Banded kokopu is therefore affected by increased turbidity from SS rather than lethal SS concentrations. As redfin bully were not affected by either high turbidity levels or high SS concentrations, the low abundance of this species in rivers with high SS concentrations is likely to be related to the siltation of benthic habitats.     

Influence of rock‐pool characteristics on the distribution and abundance of inter‐tidal fishes

Rock pools can be found in inter‐tidal marine environments worldwide; however, there have been few studies exploring what drives their, fish species composition, especially in Australia. The rock‐pool environment is highly dynamic and offers a unique natural laboratory to study the habitat choices, physiological limitations and adaptations of inter‐tidal fish species. In this study rock pools of the Sydney region were sampled to determine how the physical (volume, depth, rock cover and vertical position) and biological (algal cover and predator presence) parameters of pools influence fish distribution and abundance. A total of 27 fish species representing 14 families was observed in tide pools at the four study locations. The five most abundant species were Bathygobius cocosensis, Centropogon australis, Enneapterygius atrogulare, Lepidoblennius haplodactylus and Microcanthus strigatus, which together represented 71% of the total number of fish recorded. Larger rock pools containing more algal and rock ledge cover hosted a larger and more diverse population of fish. Furthermore, certain species were only found in pools with specific characteristics, such as the presence of loose shells, a variety algae or rock cover, suggesting a high degree of habitat specificity. By contrast, some species were ubiquitous and thus can likely tolerate a wide variety of physical conditions.     

Spatial variability of the surf zone fish and macroinvertebrate community within dissipative sandy beaches in Oregon,USA

Habitat heterogeneity can influence biological communities by providing a diversity of areas that can be occupied by different species. Sandy beach surf zones are often considered homogenous environments; however, sand bars moved by currents and waves can produce trench‐like shapes or troughs that provide heterogeneity. The influence of habitat heterogeneity produced by sand movement is unclear despite the fact that surf zones are an important habitat for larval and juvenile fish and macrocrustaceans. To determine if, and how, the fish and macroinvertebrate communities present in trough and non‐trough or flat areas of Oregon surf zones differ, we compared species assemblages in both areas at three beaches adjacent to estuary mouths over 2 years. Troughs had different communities compared with flat areas, with higher total catch (mean ± SD = 123.2 ± 122.1 versus 43.6 ± 44.5 individuals × 100 m^?2) and taxon richness (6.7 ± 2.7 versus 4.0 ± 2.3 taxa); these differences were potentially due to water movement, prey availability and sediment size. The fish and macroinvertebrate communities did not vary between years but there were significant differences among beaches, with the most distinct community present at the only beach adjacent to an estuary without a jetty at its mouth, which was possibly due to higher species movement between the surf zones and estuary. Fish and macrocrustacean surf zone communities varied spatially within and among beaches in relation to habitat heterogeneity provided by sand movement and, potentially, the influence of adjacent habitats.     

Riparian protection and on‐farm best management practices for restoration of a lowland stream in an intensive dairy farming catchment: A case study

Abstract

Poor water quality (high concentrations of nitrogen (N), phosphorus (P), suspended solids (SS), and faecal bacteria) in Waiokura Stream, southern Taranaki, New Zealand, is attributed to diffuse and point source (PS) inputs from dairy farming. Trend analysis of concentration time‐series data (2001–2008) and annual yields (i.e., stream load divided by catchment area) showed that significant improvements occurring since 2001 may be attributed to changes in farming practices and riparian management. Yields of filterable reactive P, total P and SS declined by 25–40% as a result of increased riparian protection, a reduction in dairy shed effluent (DSE) pond discharges from 8 to 6 with conversion to land irrigation, and a 25% reduction in the average application rate of P fertiliser. Median annual Escherichia coli concentrations declined at a rate of 116 per 100 ml per year, as a result of fewer PS discharges and improved riparian management. Thus, improvements in stream water quality were attributed to adoption of on‐farm best management practices, fewer DSE discharges and riparian management involving permanent livestock exclusion from stream banks and riparian planting to mitigate runoff from pasture. During 2001–06, N fertiliser use increased by 30% and, with a 130% increase in supplementary cattle feed during 2003–08, led to an increase in average milk solids production 1021 to 1262 kg ha^?1 during 2001–06 with the increased production likely associated with increased N leaching losses. Total N and nitrate‐N concentrations and yields increased during 2001–07 as a result of the intensification in land use and increased N cycling. Stream invertebrate surveys using the macroinvertebrate community index (MCI) metric showed little improvement in MCI during 2002–07, probably because of the relatively short timeframe of this study and because water temperatures were not a limiting factor for invertebrate communities. The absence of native forest streams in the proximity of Waiokura Stream that might act as sources of sensitive species to recolonise the restored stream should also be considered as a constraint to improvements in biological community structure.     

Prey selection and dietary overlap of shortfinned (Anguilla australis) and longfinned (A. dieffenbachii) eels during summer in the Horokiwi Stream,New Zealand

Benthic macroinvertebrates were collected and the diets of shortfinned eels (Anguilla australis) and longfinned eels (Anguilla dieffenbachii) inhabiting a small coastal New Zealand stream were examined to investigate intraspecific and interspecific trophic partitioning and prey selection. Our results showed intraspecific segregation of preferred prey among three size classes of juvenile shortfinned eels, but there was significant overlap between different size classes of longfinned eels. All size classes of both species of eel fed nocturnally on similar prey, and so there was no indication of temporal or trophic segregation. Therefore, habitat separation is assumed to be the main mechanism to reduce interspecific competition in these two co‐occurring species of eels.