Wood enhances crayfish (Paranephrops planifrons) habitat in a forested stream

The mechanisms of interaction between stream life and habitat are often complex and poorly understood. We explored the response of a freshwater crayfish (Paranephrops planifrons) to the functions of large wood with a view towards possible future use of wood in stream restoration in New Zealand. We compared three sub‐reach types within a native forest stream in the central North Island, New Zealand; complex wood‐rich, simple (straight) woodless, and geomorphically complex woodless. Stable logs embedded across the channel created considerable habitat heterogeneity, particularly diversity of substrate, water depths and velocities, that was associated with a significantly higher abundance and biomass of crayfish compared with a straight woodless reach. Although undercut banks in woodless sub‐reaches also supported abundant crayfish, wood increased the proportion of stream area used as habitat, apparently by providing surrogate edge habitat. Wood appeared to increase stream complexity by retaining streambed substrate and providing microhabitat with stable cover.     

Calibrations to estimate absolute numbers of New Zealand fur seal (Arctocephalus forsteri) pups from direct counts

Annual direct counts of seal pups can indicate long‐term trends in population size, but mark‐recapture estimates are needed to deduce absolute numbers. A calibration between results from these two methods would facilitate the use of direct counts to estimate absolute numbers, an outcome that is relatively quick, cheap and minimises disturbance of animals. Mark‐recapture estimates for the numbers of New Zealand fur seal (Arctocephalus forsteri) pups in 2003 at 10 colonies at Otago, southeastern New Zealand, were compared with independent single counts at the same colonies. A single ratio to estimate absolute numbers (y) from direct counts x was not statistically significant. Instead, two ratios were deduced, based on differences in habitat among colonies: y = 1.51x for colonies with hiding places for pups and y = 0.96x for colonies without hiding places. Application of these calibrations and their 95% prediction intervals produce estimates and ranges for the absolute numbers of pups from single annual counts.     

Swimming behaviour in a pycnogonid (note)

Four adult specimens of the pycnogonid Ammothea magniceps were observed swimming at the sea surface at night at Kaikoura. Even after capture the animals continued to swim at the surface of the water for over an hour. Such swimming behaviour is considered important in explaining the presence of “benthic” animals in plankton samples.     

Phyllosoma larvae of Jasus edwardsii (Hutton) (Crustacea: Decapoda: Palinuridae) and their distribution off the east coast of the North Island,New Zealand

The complete series of phyllosoma larval stages of spiny lobster lasus edwardsii are described. Eleven stages are recognised from specimens captured in plankton samples collected along a transect extending 185 km east of Castlepoint, North Island, New Zealand between July 1969 and December 1971. A table of distinguishing characteristics and a key for identification of stages are presented. First stage larvae occur between August and October and last stage larvae about 15 months later. Mortality through the phyllosoma stages is estimated to be 98%. Early stage larvae occur mainly inshore in Southland Current water in the upper 5 m, and later stage larvae occur more frequently offshore in East Cape Current water at 40–60 m depth.     

The spatio-temporal distribution and population structure of green turtles (Chelonia mydas) in New Zealand

Despite being endangered internationally and protected nationally, little consideration has been given to the occurrence of green turtles (Chelonia mydas) in New Zealand. New Zealand lies on the southern boundary of the distributional range of green turtles in the southwestern Pacific, with individuals found within these waters historically considered to be occasional visitors or stragglers incidentally carried by ocean currents. However, the present work shows that green turtles are present year round in New Zealand’s northern waters (c. 34°–38° S). A review of sighting, stranding and incidental capture data collected between 1895 and 2013 illustrate New Zealand’s green turtle population comprises post-pelagic immature juveniles to large subadults. The female:male sex ratio of 1.7:1 is similar to those reported from warm temperate foraging grounds in eastern Australia. A subsample of new recruits indicates green turtles recruit to neritic habitats at approximately 40.8?cm curved carapace length. This study suggests that New Zealand’s neritic habitats constitute a transitional developmental ground for post-pelagic immature green turtles. We observed an exponential increase in the number of documented records over time, though whether this is due to increased numbers of turtles or increased reporting rates, or both, is unclear and warrants further investigation. More broadly, this work provides a baseline understanding of the ecology of green turtles at the edge of their range, providing opportunities to investigate regional niche modelling and connectivity of this highly mobile species, while also monitoring broad-scale effects of climate-induced environmental change.     

Photogrammetry using in-field calibration: a non-invasive tool for predicting sex and life stages tested on Hector's dolphins in the wild

Accurate data on sex and life stage are essential for building realistic population models, which in turn are essential for sustainable conservation management. This case study develops and validates an improved photogrammetry method that allows for in-field calibration. The method was used to measure Hector's dolphins’ dorsal fins in the wild. Seven independent measurements of one dolphin resulted in a coefficient of variation of 1.39% for fin base length and 2.33% for fin height. Test measurements on shore at different distances and angles resulted in a mean error smaller than 1% up to a distance of 10?m and an angle of 40°. Dorsal fin dimensions from necropsied Hector's dolphins were analysed to evaluate the potential of predicting sex and life stage based on a dorsal fin measured in the wild. Dorsal fin shape was significantly related to sex. However, sex estimations based on this model turned out to be not accurate enough to replace traditional sexing methods for Hector's dolphins. Fin base length was significantly related to life stage for females. Estimations based on this model appear to be accurate.     

Identification of larvae of snapper Chrysophrys auratus forster by electrophoretic separation of tissue enzymes (note)

A comparison was made between the electrophoretic patterns of isozymes of esterases and glucosephosphate isomerases of adult snapper Chryosophrys auratus, suspected snapper larvae, jack mackerel Trachurus novaezelandiae larvae, and blue mackerel Scomber australasicus larvae. The suspected snapper larvae revealed similar isozyme patterns to those of the adults, but differed from the other two larval species.     

Genetic and morphological evidence for a single species of pink ling (Genypterus blacodes) in New Zealand waters

Two species of ling, Genypterus blacodes (Forster in Bloch & Schneider, 1801) and G. microstomus (Regan, 1903) have been recorded from New Zealand and Australian waters; a third species, G. tigerinus (Klunzinger, 1872) has been recorded from Australia. Specimens of ling collected from northern, central, and southern localities in the New Zealand Exclusive Economic Zone (EEZ), and specimens of G. blacodes from Australia were shown to be similar with respect to partial sequences of mitochondrial (mt)DNA, and morphometric and meristic characters. DNA sequences of part of the cytochrome b and control region showed that G. blacodes from Tasmania and New Zealand differed by 1/291 and 4/284 nucleotides respectively, but there was much greater genetic differentiation between G. blacodes and G. tigerinus (14/291 and 14/284 nucleotides), and between G. blacodes and G. capensis (23/291 and 8/284 nucleotides). MtDNA haplotypes within New Zealand show that G. blacodes is subdivided into northern and southern stocks. It is concluded that ling in New Zealand represent a single species referable to G. blacodes, and that G. microstomus Regan is a junior synonym.     

Estimated calving interval for the New Zealand southern right whale (Eubalaena australis)

Southern right whales (Eubalaena australis) were widespread in New Zealand waters before commercial whaling in the nineteenth century caused drastic declines in their abundance and distribution. Following the cessation of whaling, the population has been recovering and is now slowly recolonising its former range. Estimates of population demographics, including reproductive output, are essential for predicting the trajectory of this population. We gathered photo-identification data on female southern right whales during annual field trips to the Auckland Islands, the principal calving area in New Zealand waters. Forty-five calving intervals were observed between 2006 and 2013 (mean interval?=?3.31 years, 95% CI?=?3.06–3.57). Incorporating the effects of possible missed calving events produced a plausible range of mean calving intervals from 3.17 to 3.31 years. Our results suggest that the calving interval of New Zealand southern right whales is similar to that found in populations elsewhere.     

Propeller scars on and known home range of two orca (Orcinus orca) in New Zealand waters

Two orca (Orcinus orca, Linnaeus, 1758), photo‐identified as part of an ongoing study in New Zealand waters, have a series of deep scars in their dorsal lumbar‐caudal regions which suggests they were caused by propellers. One of the animals, first noted to have the scars in 1982, is considerably smaller than an adult of similar age. The known home range of these orca are presented. A third orca hit by a boat is presumed dead.     

Spatial and temporal variations in the population structure of the soft-shell clam Mya arenaria in the Pomeranian Bay (southern Baltic Sea)

The population structure of Mya arenaria has been investigated in the sublittoral zone of the Pomeranian Bay (southern Baltic Sea). Box-corer samples were collected during a 1.5-year period in 1993/94 to follow changes in size and age structure of the clam populations in different parts of the study area. Large spatial differences in population structure were found between the sheltered southwest of the Bay and the shallow and exposed Oder Bank in the centre. The stock of the Oder Bank consisted of two different clam types. A slow-growing cohort was assumed to be autochtonous on the Oder Bank, whereas a fast-growing one was assumed to have immigrated from the surrounding area. The contribution of the two cohorts to the total density varied seasonally. Because of bedload transport of clams, the contribution to the reduction of the clam stock by wintering sea ducks could not be quantified. In the southwest of the Pomeranian Bay erosion was of minor importance. High mortality rates during the first two years of life were assumed to be caused by predation. Mortality rates of older cohorts remained stable until old age. Variations in cohort strength were related to interannual differences in the reproductive success. A mild winter presumably lowers the reproductive success in the subsequent summer. Severe oxygen depletion in summer 1994 caused a strong reduction in the clam stock at stations deeper than 10 m.     

New name for some Congericola (Parasitic Copepoda) from New Zealand conger eels

Specimens of Congericola from a New Zealand conger eel, Conger verreauxi, which were previously described as Congericola pallidus Beneden, are placed in a new species, Congericola kabatai, on the basis of the possession of a four‐segmented first antenna, a two‐segmented exopod in the third pereiopod, the presence of spines on the fourth pereiopod, and other differences in ornamentation of the pereiopods which separate it from the closely related species Congericola pallidus.     

In situ sampling reveals rapid uptake and depuration of polycyclic aromatic hydrocarbons by surf clams (Paphies subtriangulata) affected by the Rena oil spill

ABSTRACT

To investigate the uptake and depuration of polycyclic aromatic hydrocarbons associated with the Rena oil spill we sampled the surf clam Paphies subtriangulata at two open coast locations (6?km apart) just prior to oil coming ashore (7 October 2011), then at 1–3 week intervals for the next 4 months. Total polycyclic aromatic hydrocarbons (tPAH) increased at both sites from 1 to 96–124?µg?kg^?1 (wet weight) by 18 October before declining to low levels (<4?µg?kg^?1) by February 2012. Ongoing sampling throughout 2012–2014 included three additional sites to the north east (up to 30?km away) and a site 5?km to the south east revealing tPAH levels generally <10?µg?kg^?1 except in October 2013 where levels ranged between 39–45?µg?kg^?1 at all sites. A comparison of PAH component profiles with oil-contaminated beach sediment indicated that the high levels observed in surf clams between October–December 2011 were clearly associated with the Rena spill. However, the October 2013 peak had a PAH profile inconsistent with weathered Rena oil, suggesting an alternative source of contamination. Our results highlight the potential for P. subtriangulata as a PAH monitoring tool but recognise more study is needed to better quantify baseline levels and uptake and depuration dynamics.     

Distribution and abundance of Abarenicola affinis (Arenicolidae,Polychaeta) in tidal inlets of Otago,New Zealand

Lugworms are important members of the macrobenthos of sheltered intertidal sediments, and this study assessed the abundance and distribution of Abarenicola affinis in Otago, southern New Zealand. Using a faecal cast:lugworm ratio (1.00:1.09) revealed a patchy distribution across inlets, with an overall mean abundance of 11.1 individuals/m² (range: 3.8 to 21.3 individuals/m²). Distribution patterns varied among inlets, with lugworms mostly confined to the high intertidal zone, but spread across all intertidal zones in one inlet. The lugworm habitat was characterised by muddy to medium sand (55–233 µm mean grain size) with low organic matter (< 2%) and chlorophyll a (1–12 µg/g dry sediment) contents. Depending on the inlet, lugworm abundance was related to sediment parameters, indicating that their distribution across Otago inlets is habitat dependent. The present findings also indicate that factors other than those measured contribute to A. affinis distribution and abundance patterns in this region.     

A new species of eucypris (ostracoda) from wellington

Eucypris pratensis sp. nov. is described from Wellington. It is considered conspecific with the one previous record of the genus from North Island, New Zealand.     

Calibration techniques and sampling resolution requirements for groundtruthing multibeam acoustic backscatter (EM3000) and QTC VIEW™ classification technology

Both acoustic and sediment surveys were carried out in the Broughton Archipelago, British Columbia, in order to map a former aquaculture site and calibrate acoustic surveys with georeferenced sediment properties. The acoustic surveys included EM3000 Multibeam (including backscatter) and QTC VIEW™ (Series IV) technologies, while the geotechnical survey entailed Van Veen grab sampling of surface sediments and associated analyses. The two acoustic technologies were consistent in their ability to identify distinct regions of seafloor characterized by rock outcrops, consolidated substrates, or gel-mud depositional fields. Both multibeam backscatter data and QTC VIEW™ number-coded classifications were extracted across a range of circular areas located at each georeferenced sampling station (radii: 2, 3, 4, 5, 8, 12, 16, 20 m). Statistical correlations were observed between backscatter and certain geotechnical properties, such as sediment porosity, sediment grain size fractions (<2 μm, silt content), and particulate sulfur concentration. The areal resolution of backscatter extraction was explored in terms of determining a sensitive calibration technique between backscatter and sediment properties. In general the highest r² values between backscatter and sediment variables were observed across extraction radii between 8 and 20 m. Such groundtruthing techniques could be used to interpolate seafloor characteristics between sampling stations and provide a steering tool for sampling designs associated with benthic monitoring programs.     

Long‐term comparison of structure and dynamics of the red coral metapopulation of the Portofino Promontory (Ligurian Sea): a case‐study for a Marine Protected Area in the Mediterranean Sea

A large amount of data on the precious coral Corallium rubrum has attested to a dramatic shift in the size structure of its over‐harvested Mediterranean populations in recent decades. One of the main problems for the conservation of this species is the substantial lack of data concerning the time span necessary for a population subjected to pluri‐decennial harvesting pressure to return to its pristine status. Here, we present a multi‐annual data set gathered from the Marine Protected Area (MPA) of Portofino, which hosts the most important shallow‐water coral populations in the Ligurian Sea and was subjected to strong harvesting pressure from the 1950s to the early 1970s. Quantitative comparison of the population structure data recorded in 1964, 1990 and 2012 indicated a strong size increase of the colonies (from 3 to 8 g mean weight), resulting in an increase in colony biomass from 300 to the current 1500 g·m^?2. As a consequence, over the same span of time, the density of colonies has slightly decreased. The role of mass mortality phenomena, like that occurred in this area during 1999, as possible biological features triggering the switch of red coral populations from a ‘grass plain‐like’ towards a ‘forest‐like’ structure, is discussed. All these data indicate that the instigation of MPAs is a winning strategy in the conservation of this precious species and similar management plans should also be evaluated for the protection of the deep benthic communities thriving on off‐shore banks.