Evaluating techniques for sampling stream crayfish (Paranephrops planifrons)

We evaluated several capture and analysis techniques for estimating abundance and size structure of freshwater crayfish (Paranephrops planifrons) (koura) from a forested North Island, New Zealand stream to provide a methodological basis for future population studies. Direct observation at night and collecting with baited traps were not considered useful. A quadrat sampler was highly biased toward collecting small individuals. Handnetting at night and estimating abundances using the depletion method were not as efficient as handnetting on different dates and analysing by a mark‐recapture technique. Electrofishing was effective in collecting koura from different habitats and resulted in the highest abundance estimates, and mark‐recapture estimates appeared to be more precise than depletion estimates, especially if multiple recaptures were made. Handnetting captured more large crayfish relative to electrofishing or the quadrat sampler.     

Riparian management affects instream habitat condition in a dairy stream catchment

Using a space-for-time substitution design, we investigated the response of structural instream habitat and fish populations to different riparian management practices throughout a Dairy Best Practice Catchment. We found a significant negative correlation between the upstream area of stock exclusion fencing and deposited instream fine sediment cover. Furthermore, we determined that this relationship emerges when ≥300?m lengths of upstream riparian area were included in the analysis, indicating the scale at which stock exclusion fencing results in a positive instream habitat response. Specifically, for this historically degraded spring-fed stream, our findings indicate that riparian segments with 5 m wide stock exclusion fences (both banks) are required to achieve instream fine sediment cover below 20% in downstream reaches. Fish were sparse and evenly spread throughout the catchment. Fish distributions were not correlated with reach-scale riparian or instream habitat variables, possibly because the available habitat quality gradient was too narrow.     

Factors affecting habitat occupancy of fish assemblage in the Gulf of Trieste (Northern Adriatic Sea)

Species composition, richness and abundance of the fish assemblage were studied over six different inshore macrohabitats in the southern part of the Gulf of Trieste (Northern Adriatic Sea) using the visual counts technique. Fifteen environmental variables were taken into consideration in order to determine microhabitat preferences of fish species, using canonical correspondence analysis and electivity indices. The results suggest that the structure of the fish assemblage in shallow habitats is affected by a large number of interplaying factors. Depth, type of bottom and vegetation cover – incorporating both abiotic and biotic variables – are some of the factors responsible for coastal fish distribution. Microhabitat preferences for 29 fish species are presented in the depth range from 0.5 to 3 m.     

Use of riverine through reef habitat systems by dog snapper (Lutjanus jocu) in eastern Brazil

The early life history of Western Atlantic snappers from the Southern hemisphere is largely unknown. Habitat use of different life stages (i.e. size categories) of the dog snapper (Lutjanus jocu) was examined across the largest South Atlantic reef–estuarine complex (Abrolhos Shelf, Brazil, 16–19° S). Visual surveys were conducted in different habitats across the shelf (estuary, inner-shelf reefs and mid-shelf reefs). Lutjanus jocu showed higher densities on inner-shelf habitats, with a clear increase in fish size across the shelf. Individuals <7 cm were associated with both the estuary (mangrove and rocky habitats) and inner-shelf reefs (particularly shallow fore-reefs and tide pools). Individuals ranging 10–30 cm were broadly distributed, but consistently more abundant on inner-shelf reefs. Individuals between 30 and 40 cm were more common on mid-shelf reefs, while individuals >40 cm were recorded only on mid-shelf reefs. Literature data indicate that individuals ranging 70–80 cm are common on deep offshore reefs. This pattern suggests that the dog snapper performs ontogenetic cross-shelf migrations. Protecting portions of the different habitats used by the dog snapper during its post-settlement life cycle is highlighted as an important conservation and management measure.     

Effects of habitat complexity on cannibalism rates in European green crabs (Carcinus maenas Linnaeus, 1758)

The habitat in which predator–prey interactions take place may have a profound influence on the outcome of those interactions. Cannibalism is an intriguing form of predation whereby foraging by predators may contribute to the regulation of their own populations.This is particularly interesting in the case of invasive species, like the widely distributed European green crab (Carcinus maenas). This study explores how habitat complexity influences cannibalism rates in green crab populations of Prince Edward Island, Atlantic Canada. Both laboratory and field experiments were conducted to measure feeding rates by individual adult green crabs on a standard number of smaller conspecifics. In the laboratory, experimental treatments mimicked unstructured to increasingly structured habitats: water, sandy bottom, oyster shells, mussel shells, oyster shells with sandy bottom and mussel shells with sandy bottom. In those trials, adult green crabs consumed several times more juveniles on unstructured habitats than on the most structured ones, with a gradual decrease in predation rates across increasingly complex habitats. Field inclusion experiments used the same approach and were conducted in sandy bottoms, sandy bottoms with a layer of oyster shells and sandy bottoms with a layer of mussel shells. These trials showed similar patterns of decreasing feeding rates across increasingly complex habitats, but differences among treatments were not significant. These results support the idea that complex habitats have the potential to mediate predator–prey interactions, including adult–juvenile cannibalism in green crabs.     

基于AMBI和M-AMBI指数的黄河口及邻近海域底栖生境质量评价

The protection of the biological diversity and the maintenance of the regional ecological integrity for the Huanghe （Yellow River） Estuary and its adjacent areas are practically significant and valuable. However, frequent human activities and natural climate changes have caused vigorous disturbances on the ecosystem in these sea areas. An objective assessment on the benthic habitat quality （BHQ） of the Huanghe Estuary and its adjacent areas is conducted, using AZTI＇s Marine Biotic Index （AMBI） and multivariate AMBI （M-AMBI） based on the data of macrobenthos in May and August 2011. The results show that both the indices do not correlate significantly, and their assessment results are greatly different. All of the samples assessed using the AMBI were ＂high＂ or ＂good＂, because the ecological group I （EGI） and the ecological group II （EGII） were dominant macrobenthic ecological groups in the research area. Owing to a low species＇ richness and a high individual abundance in some samples, the BHQ levels using the M-AMBI were worse than those of the AMBI. Significant correlations are observed between the M-AMBI, water depth, bottom water salinity and dissolved inorganic nitrogen, thus the M-AMBI could sensitively respond to environmental changes and distinguish influences from uninfluenced stations, but the AMBI could not. The consistent results between the AMBI and the M-AMBI mainly appeared in the uninfluenced （undisturbed or slightly disturbed） sta- tions. Therefore, the M-AMBI is more effective than the AMBI in assessing the benthic habitat quality in the Huanghe Estuary and its adjacent areas. Using the M-AMBI to assess the BHQ of the Huanghe Estuary and its adjacent areas, the results show that 3% of the stations are undisturbed and the BHQs are ＂high＂, and 61% of the stations are slightly disturbed and those of the BHQ are ＂good＂, and the rest are meanly disturbed and those of the BHQ are ＂moderate＂.     

Long‐term presence and habitat use of Cuvier's beaked whale (Ziphius cavirostris) in the Central Tyrrhenian Sea

Cuvier's beaked whale (Ziphius cavirostris, G. Cuvier 1823) is a poorly known species and many international agreements have asked for a better understanding of its biology for conservation purposes. In the present study, systematic cetacean surveys were carried out from ferries along a trans‐regional fixed transect in the Central Tyrrhenian Sea (Civitavecchia, Latium – Golfo Aranci, Sardinia), just outside the southeastern border of the Pelagos Sanctuary. This research provided long‐term, consistent data on Cuvier's beaked whale during two research periods (1990–1992 and 2007–2011). The objective of the research was to compare the presence, distribution and habitat use of Cuvier's beaked whale between the two investigated periods. Summer data (June–September) from the two periods were compared in terms of frequency of sightings, group size and spatial distribution related to the main ecogeographical features. A presence‐absence model (generalized additive modelling) was performed to predict habitat suitability in the two study periods. The results highlight long‐term site fidelity of Cuvier's beaked whale in the Central Tyrrhenian Sea with encounter rates comparable to the ones reported for other key areas. Separate suitability models based on 1990s and 2000s data appeared to work for each individual time period but differences were evident between the two periods, indicating changes in habitat selection over time. Our findings of the study appear to expand the definition of suitable beaked whale habitat and underline how the temporal scale of the analysis can affect the results in habitat studies. Moreover, this research highlights the importance of the Central Tyrrhenian Sea marine region for Cuvier's beaked whale and the ability of continuous monitoring to identify changes in cetacean frequency and distribution, necessary for adaptive conservation management approaches.     

Migratory behaviour of spawning rainbow trout (Oncorhynchus mykiss) in the Tongariro River,New Zealand,after habitat alteration

The movements of 92 adult rainbow trout (Oncorhynchus mykiss) from Lake Taupo into the Tongariro River, New Zealand, were monitored using radio‐telemetry every 3 days during the main spawning period between May and November 2003. This study repeated one previously conducted in 1995. Differences in spawning site preference and resting locations between 1995 and 2003 probably reflect differences in the nature of the river as a result of major natural floods that occurred in 1998. Average migration times were slower than in 1995 and the correlation between flow and mean daily movement was less distinct owing to the dry and settled weather during July and August, although fish did respond to freshets when they occurred. Peak movement occurred between 1600 and 2000 h NZ Standard Time with no movement occurring between midnight and 0400. Fish adjusted their movement in response to changing photoperiod. Nineteen fish were observed above the mouths of natal tributary streams for several weeks in the main river stem before entering these tributaries.     

基于表层及温跃层环境变量的南太平洋长鳍金枪鱼栖息地适应性指数模型比较

为了量化比较海表层环境及温跃层环境对南太平洋长鳍金枪鱼渔场分布的影响程度;本研究采用2010-2012年南太平洋长鳍金枪鱼延绳钓渔船实际生产统计数据;结合卫星遥感所获取的海表面温度（sea surface temperature;SST）和海表面高度（sea surface height;SSH）数据以及Argo浮标所获取的温跃层上、下界水温和深度数据;运用外包络法分别构建了基于海表层环境变量、温跃层上界环境变量以及温跃层下界环境变量的3种栖息地适应性指数（habitat suitability index;HSI）模型。模型验证结果显示;基于海表层环境变量的HSI模型;HSI>0.6时所占产量比重为70.04%;投钩数量比重为70.86%;HSI>0.8时所占产量比重为24.92%;投钩数量比重为25.79%;基于温跃层上界环境变量的HSI模型;HSI>0.6时所占产量比重为82.17%;投钩数量比重为80.95%;HSI>0.8时所占产量比重为33.24%;投钩数量比重为32.69%;基于温跃层下界环境变量的HSI模型;HSI>0.6时所占产量比重为81.01%;投钩数量比重为81.54%;HSI>0.8时所占产量比重为43.51%;投钩数量比重为43.73%。研究发现;基于温跃层上界和下界环境变量的两个HSI模型预报精度明显高于基于表层环境变量的HSI模型;且基于温跃层下界环境变量的HSI模型预报精度高于基于温跃层上界环境变量的HSI模型。研究结果表明;相较于海表层环境;温跃层环境;尤其是温跃层下界环境特征对南太平洋长鳍金枪鱼资源分布的影响更为显著。     

小黑山岛潮下水生层生境适宜性分析-以毛蚶为例

以小黑山岛潮下水生层为研究区域,利用生境适宜性指数（habitat suitability index,HSI）模型,同时结合GIS空间分析,选划出适宜毛蚶的增殖修复区域。综合文献查阅和咨询专家咨询的方式,确定影响毛蚶生存的7个重要影响因子,分别为：底质类型,水温,盐度,溶解氧,水深,pH和氨氮。结合专家赋值法和层次分析法确定每个评价因子的权重,利用GIS空间分析模块将现状调查数据进行插值、重分类和栅格计算,绘制研究区域目标种群生境适宜性地图。结果表明：对于刺参和紫贻贝,研究区域均适宜其生长繁殖,同一物种,相同季节在空间上无站位差异,但各季节的生境适宜性分区变化明显;对于魁蚶来说,东北部海域较适宜增殖,其次为西部海域,四季均以较适宜生境为主,仅冬季出现基本适宜生境。水温是造成季节差异的主要因素,底质类型则是引起生境站位差异的重要原因。可为后续的生物多样性保育和生态修复提供基础资料参考。     

Diel feeding periodicity of torrentfish (Cheimarrichthys fosteri) in two braided rivers of Canterbury,New Zealand

Torrentfish Cheimarrichthys fosteri Haast were collected at 4‐hour intervals over a full day in winter and summer, 1984–85, from the Ashley and Rakaia Rivers in Canterbury, New Zealand, to determine their diel feeding periodicity. Both populations fed, almost exclusively, from dusk to dawn in both seasons, with the quantity of food in their stomachs accumulating to peak levels by early morning. However, Ashley females had significantly less food in their stomachs than did males in summer, the season with a high incidence (91%) of females in spawning condition. Aquatic stages of Deleatidium spp. (Ephemeroptera: Leptophle‐biidae) and Chironomidae constituted from 85 to 98% by number and 63 to 80% by dry weight of all foods eaten. Chironomids (small prey) comprised up to 85% of the total foods eaten by number but only 17% by dry weight, while Deleatidium (large prey) comprised up to 69% of the prey by number and 63% by dry weight. Numerically, chironomids were an important component in the torrentfish diet in both seasons in the Rakaia (71 to 75%), but only so in winter in the Ashley (85%). The reported daily feeding cycle is consistent with observations in a simulated stream, that torrentfish largely remain inactive during the day and come out to feed at night.     

Community structure of epibenthic meiofauna in the St. Lucia Estuarine Lake (South Africa) during a drought phase

The St. Lucia Estuary is Africa's largest estuarine system. It is a major component of the iSimangaliso (formerly Greater St. Lucia) Wetland Park, which was declared a World Heritage Site in 1999. The system has been severely affected by drought conditions which have culminated in the mouth of the system being cut off from the Indian Ocean since June 2002, for a period of almost five years. This study aimed to document the dynamics of meiofauna of the system during a drought phase, since (1) the effects of droughts on estuaries are poorly documented and understood and (2) because studies of meiofauna have never been undertaken in this system before. Meiofauna samples as well as physico-chemical data were collected at representative sites in February, April, August and October 2005. The drought had a major effect on the estuary, resulting in the development of hypersaline conditions (maximum 126 at Hells Gate), and to the complete evaporation of pelagic habitats, especially in the northern regions. The meiofauna of the St. Lucia Estuary was statistically separated into two distinct spatial clusters under drought conditions. The first cluster comprised sites in the Narrows and the southern region of South Lake, while the second comprised sites in the northern regions of South Lake and False Bay. Meiofauna of cluster 1, which was least affected by the drought, comprised nematodes, polychaetes, copepods, amphipods and ostracods, all of which accounted for 97% of meiofauna in this cluster. Cluster 2 on the other hand, which was more severely affected by the drought, was dominated by nematodes and copepods, which cumulatively contributed 97% to meiofauna in this group. Taxonomic richness and diversity of meiofauna were positively correlated with water depth, while abundance was inversely correlated with water temperature. The major effects of low water levels on the meiofauna of the system occurred through a negative impact on diversity and taxonomic richness, resulting in assemblages dominated by taxa most physiologically suited to such conditions. Secondly, at the peak of the drought, there was discontinuous water flow in the St. Lucia Estuary, resulting in parts of the northern and southern regions of the system being fragmented. This could have prevented the spread of meiofaunal taxa between the different basins of the system, and also explains the spatial separation of meiofauna into distinct clusters within the estuary.     

Deep-water macrofaunal diversity in the Faroe-Shetland region (NE Atlantic): a margin subject to an unusual thermal regime

The Faroe-Shetland Channel, situated in the NE Atlantic, encompasses a number of different sediment types (habitats) as well as being subject to an unusual thermal regime. Our main objective was to assess variations in macrofaunal generic diversity and composition along two transects to gauge the relative influence of regional hydrography and local habitat heterogeneity. We found that generic richness and diversity on a West of Shetland (WoS) transect correlated most strongly with temperature range, whilst along a North of Shetland (NoS) transect, richness and diversity correlated negatively with sedimentary variables, notably total organic carbon. Macrofaunal composition at WoS is also strongly influenced by water temperature with specific genera ( e.g. Galathowenia positively associated with the temperature eigenvectors), whereas at NoS it is a combination of temperature, silt + clay fraction and total organic carbon that has an impact on composition ( e.g. Proclea and Pseudosphyrapus , showing a negative relationship with the temperature eigenvectors). Although the temperature regime exerts a strong control on regional ecology, local habitat heterogeneity remains a significant factor.     

Effects of turbidity on the migration of juvenile banded kokopu (Galaxias fasciatus) in a natural stream

Laboratory experiments have shown that the juvenile migratory stage of banded kokopu (Galaxias fasciatus (Gray 1842)) is more sensitive to turbidity than other native fish species and avoids turbidity levels of >25 nephelometric turbidity units (NTU). Field trials using juvenile fish collected from the Tarawera River and Hays Stream, New Zealand, were used to test the results from these laboratory experiments by measuring the effects of turbidity on the migration direction and rate for banded kokopu in a natural stream setting. In the stream setting, neither the migration rate nor the migration direction were affected at turbidity <25 NTU. At higher turbidity levels, significantly fewer fish migrated up stream within a given time period. Because there was rarely any downstream movement, this suggests the fish either halted or slowed their upstream movement. A slower rate of migration could result in fewer juveniles reaching adult habitat, and would account for the reduced abundance of adult banded kokopu in rivers that are turbid during the migration season. Achieving turbidity levels of <25 NTU in rivers and streams during the migration season would therefore help maintain upstream migrations and populations of banded kokopu, and hence other native fish species.     

Spatial spring distribution of the copepod Eurytemora affinis (Copepoda,Calanoida) in a restoring estuary,the Scheldt (Belgium)

The spatial spring distribution of Eurytemora affinis (adults and C5) in the Scheldt estuary (Belgium) brackish and freshwater reaches was studied in between 1996 and 2007. The bulk of the E. affinis population being generally situated in the brackish water reach (salinity > 0.5); we studied which environmental factors are responsible for its recent sporadic occurrence in the freshwater estuarine reach. Using PLS analysis, it is shown that its presence upstream is limited by a sufficient oxygen concentration (>4 mg l⁻¹) that is associated with temperature. Not only are the environmental conditions in the upstream zone important, but also the frequent presence of an O₂ minimum zone in the mid-estuary (O₂ min < 1.3 mg l⁻¹) seems to block the movement of the downstream E. affinis population in an upstream direction. Occasionally, the bulk of the population is however situated upstream. During these periods, high E. affinis abundance was also observed in the Durme tributary. Our findings suggest the possibility to use E. affinis as an “indicator” species of water quality, but also lead us to stress the necessity to consider conditions over the entire estuary when studying restoration effects, not exclusively in the zone of interest.     

Habitat partitioning by five congeneric and abundant Choerodon species (Labridae) in a large subtropical marine embayment

The habitats occupied by the juveniles and adults of five morphologically similar, diurnally active and abundant Choerodon species in the large subtropical environment of Shark Bay, a “World Heritage Property” on the west coast of Australia, have been determined. The densities of the two life cycle stages of each Choerodon species in those habitats were used in various analyses to test the hypotheses that: (1) habitats are partitioned among these species and between their juveniles and adults; (2) such habitat partitioning is greatest in the case of the two Western Australian endemic species, i.e. Choerodon rubescens and Choerodon cauteroma; and (3) the extent of habitat partitioning between both of these two species and the only species that is widely distributed in the Indo-West Pacific, i.e. Choerodon schoenleinii, will be less pronounced. Initially, catches of each of the five congeneric species, obtained during other studies in Shark Bay by angling, spearfishing and otter trawling, were collated to elucidate the broad distribution of these species in that embayment. Underwater visual census was then used to determine the densities of the juveniles and adults of each Choerodon species at sites representing the four habitat types in which one or more of these species had been caught, i.e. reefs in marine waters at the western boundary of the bay and seagrass, reefs and rocky shorelines in the two inner gulfs. The compositions of the Choerodon species over marine (entrance channel) reefs and in seagrass were significantly different and each differed significantly from those in both inner gulf reefs and rocky shorelines, which were, however, not significantly different. Choerodon rubescens was restricted to exposed marine reefs, and thus occupied a different habitat and location of the bay than C. cauteroma, the other endemic species, which was almost exclusively confined to habitats found in the inner gulfs. Choerodon cauteroma differed from other Choerodon species in being relatively abundant in each inner gulf habitat and undergoing an ontogenetic change in habitat. Thus, while its juveniles lived predominantly in seagrass, its adults occupied mostly reefs and rocky shorelines. Choerodon cephalotes occurred almost exclusively in seagrass, while C. cyanodus was relatively most abundant along rocky shorelines. Choerodon schoenleinii, the only one of the five Choerodon species to be widely distributed outside Australia, occupied reefs and, to a lesser extent, rocky shorelines in the inner gulfs. The above differences in habitat among Choerodon species would reduce the potential for competition for spatial resources among these abundant and similar species and between the juveniles and adults of one of the species.     

Use of SPOT 5 and IKONOS imagery for mapping biocenoses in a Tunisian Coastal Lagoon (Mediterranean Sea)

Mapping marine biocenoses is an efficient method for providing useful data for the management and conservation of Mediterranean lagoons. Fused images from two satellites, SPOT 5 and IKONOS, were tested as management tools for identifying specific ecosystems in the El Bibane lagoon, situated in southern Tunisia near the Libyan border. The objectives of this study were to provide a precise map of the entire El Bibane lagoon using fused images from SPOT 5 and to compare fused images from SPOT 5 and IKONOS over a test-area. After applying a supervised classification, pixels are automatically classified in four classes: low seagrass cover, high seagrass cover, superficial mobile sediments and deep mobile sediments. The maps of the lagoon revealed and confirmed an extremely wide distribution of seagrass meadows within the lagoon (essentially Cymodocea nodosa; 19 546 ha) and a large area of mobile sediments more or less parallel to the shore (3 697 ha). A direct comparison of overall accuracy between SPOT 5 over the entire area, SPOT 5 over the test-area and IKONOS over the test-area revealed that these tools provided accurate mapping of the lagoon environment (83.25%, 85.91% and 73.41% accuracy, respectively). The SPOT 5 images provided greater overall accuracy than the IKONOS image, but did not take into account the heterogeneous spatial structure of the seagrasses and sediments present in the lagoon environment. Although IKONOS imagery provided lower overall accuracy than SPOT 5, it proved a very useful tool for the mapping of heterogeneous structures as it enabled the patchiness of formations to be better taken into account. The use of SPOT 5 and IKONOS fused images appears to be very promising for completing the mapping of lagoons in other regions and countries of the Mediterranean Sea.     

Snapper (Chrysophrys auratus): a review of life history and key vulnerabilities in New Zealand

Snapper (Chrysophrys auratus) is an important coastal fish species in New Zealand for a variety of reasons, but the large amount of research conducted on snapper has not been reviewed. Here, we review life history information and potential threats for snapper in New Zealand. We present information on snapper life history, defining stages (eggs and larvae, juvenile and adult), and assess potential threats and knowledge gaps. Overall we identify six key points: 1. post-settlement snapper are highly associated with certain estuarine habitats that are under threat from land-based stressors. This may serve as a bottleneck for snapper populations; 2. the largest knowledge gaps relate to the eggs and larvae. Additional knowledge may help to anticipate the effects of climate change, which will likely have the greatest influence on these early life stages; 3. ocean acidification, from land-based sources and from climate change, may be an important threat to larval snapper; 4. a greater understanding of population connectivity would improve certainty around the sustainability of fishery exploitation; 5. the collateral effects of fishing are likely to be relevant to fishery productivity, ecosystem integrity and enduser value; 6. our understanding of the interrelationships between snapper and other ecosystem components is still deficient.