Effects of overcrowding on floating behaviour in the mud whelk cominella glandiformis (Mollusca: Gastropoda)

The mud whelk Cominella glandiformis (Reeve, 1874) was observed on a tidal flat “floating” upside down beneath the water surface. Study in the laboratory showed that, when C. glandiformis is “floating”, the foot is distended with blood to approximately twice its normal surface area. In the laboratory C. glandiformis “floated” only during daylight hours, and the incidence of “floating” increased markedly as specimens became more overcrowded. Possibly “floating” is a rapid dispersal mechanism in response to overcrowding; it may also assist respiration in the event of overcrowding producing anaerobic conditions. Its occurrence only during daylight hours suggests that a reaction to light may also be involved.     

The “Furkert‐Heath” relationship for tidal inlet stability reviewed

The “Furkert‐Heath” relationship is a commonly used method of assessing the stability of New Zealand inlets. However, the equation published by Heath in 1975 was incorrectly calculated which has led to misinterpretation of data in some cases. Recalculation resulted in a new linear relation, presented here, between the inlet gorge cross‐sectional area A and tidal prism O. Misuses of the “Furkert‐Heath” equation are identified including: extrapolating predictions beyond the data field; neglecting errors inherent in measurement of A and O; method of characterising sedimentation regime; neglecting confidence limits of data; using A‐O relationships as the sole indicator of inlet stability; and applying the relationship to inlets other than barrier‐enclosed inlets.     

Determination of mercury in seawater at sub-nanogram per liter levels

Using a refined two-stage gold amalgamation preconcentration technique in conjunction with cold vapor atomic absorption (CVAA) detection, mercury in various Pacific Northwest coastal waters has been determined. Through the use of extremely clean reagents and special handling techniques, the blank has been reduced and reproducibility greatly improved for both “easily reducible mercury” and “total mercury”.Samples of unfiltered water, taken at the surface, as well as at 10 m, 100 m, and 175 m have all yielded “easily reducible mercury” at between 0.1 and 0.5 ng l^?1, and “total mercury” between 0.2 and 1.0 ng l^?1. Variability within replicate field samples is less than 10%, although variations of greater than 100% may be seen over a period of hours in Sequim Bay.     

Astrothrombus rugosus clark,new to New Zealand,with notes on ophioceres huttoni (farquhar), hemilepis norae (benham), and ophiuroglypha irrorata (lyman) (echinodermata: Ophiuroidea)

Astrothrombus rugosus (Clark), hitherto known only from eastern Australia, is recorded here from off Kaikoura. Hemilepis abernethyi (Fell) and Ophioceres marginata (Fell) are here regarded as junior subjective synonyms of Hemilepis norae (Benham) and Ophioceres huttoni (Farquhar) respectively. Some New Zealand specimens of the cosmopolitan species Ophiuroglypha irrorata (Lyman) differ in some respects from the “typical” form; they may prove to represent a new species.     

210Pb测年的“延年”与“折寿”

放射性同位素²¹⁰Pb适于百年尺度的定年和沉积速率计算,已经在冰芯、土壤、湖泊、水库、河口、潮滩、潟湖、海湾和浅海陆架等多种环境得到广泛应用。目前,²¹⁰Pb测年方法的应用有两种现象值得注意：一种是“延年”,即根据测算的沉积速率回溯定年的时间,有时回溯的时间跨度可达二、三百年;另一种是“折寿”,即根据测算的表观沉积速率计算得到的²¹⁰Pb本底层位之上的时间跨度不足百年。根据²¹⁰Pb测年的原理和有关仪器的检出限来分析,本文作者认为,²¹⁰Pb直接定年的上限以110 yr~155 yr为宜。因此,“延年”的运用有一定的前提条件,即研究区的沉积环境在回溯的数百年尺度内应该保持稳定,同时回溯的定年结果最好有其他独立的定年方法（如历史文献记录或生物标志物等）来印证、以增加其可靠性。对于²¹⁰Pb测年的“折寿”现象,可能的原因有四种。第一,沉积及取样的压实效应没有在分析和计算过程中得到校正。第二,²¹⁰Pb活度测量的精度和不确定度影响了对本底的判断;为稳妥起见,研究者选定的本底层位一般会比真实的本底年龄要年轻一些,导致定年结果的时间跨度缩小。第三,²¹⁰Pb定年计算模式决定了本底活度值的微小差异将带来计算出来的时间跨度产生显著差异。第四,沉积过程事实上发生了后期的侵蚀和迁移,导致保存在柱样中的沉积记录不完整。为了有效地减少²¹⁰Pb测年法的结果误差,可以采取减小²¹⁰Pb活度测量子样的间距、并同步测量²²⁶Ra活度等技术手段;另外,在计算时应该使用沉积通量而不是表观沉积速率。我们相信,²¹⁰Pb测年方法的正确运用和解译将对物源判断、沉降后的侵蚀和扰动等问题提供一些有益的信息。     

A method for correcting the temperature effect on uCPT measurements in seabed sediments

Abstract

The zero load readings of cone resistance (q_c) and sleeve friction (f_s) measured by a piezocone (uCPT) shift with the ambient temperature. A method of correcting the effect of temperature on uCPT measurements in seabed sediments has been proposed for the case where there is no temperature sensor in the uCPT probe. This method is based on the assumption that the “actual” profile of f_s of soft shallow seabed sediments linearly increases with depth, and a rate of increase of α?=?0.2?kPa/m was obtained using measured ground temperatures and f_s values in seabed sediments in Isahaya Bay, Japan. An “actual” f_s profile can then be constructed using the measured f_s value at the shallow surface and the value of α. Using the differences between the measured and the estimated “actual” f_s profiles, the ground temperature profile can be obtained, and then the effect of temperature on the uCPT measurements can be corrected. The proposed method was used for temperature corrections on uCPT measurements in Isahaya Bay, Japan. The values of undrained shear strength (s_u) from the temperature-corrected uCPT measurements agree well with the laboratory measured values of s_u using the undisturbed soil samples.     

Evaluation of hydraulic conductivity through particle shape and packing density characteristics of sand–silt mixtures

Abstract

This study aims to evaluate the relationship between saturated hydraulic conductivity with particle shape and packing density characteristics of silty sand soils. The article presents a series of hydraulics tests performed on three kinds of sand with different particles shapes (Chlef rounded sand, Fontainebleau sub-rounded sand and Hostun sub-angular sand) mixed with low plastic rounded Chlef silt in the range of 0–30% fines content. The sand–silt mixture samples were tested in the constant-head permeability device at a loose relative density (D_r = 18%) and a constant room temperature (T?=?20?°C). The obtained results indicate that the measured saturated hydraulic conductivity (K_s) correlates very well with the fines content (F_c), packing density in terms of [maximum void ratio “e_max,” minimum void ratio “e_min,” predicted maximum void ratio “e_max”_pr and predicted minimum void ratio “e_min”_pr] and particle shape characteristics ratios in terms of roundness ratio (R_r = R_hs/R_mixture) and sphericity ratio (S_r = S_hs/S_mixture) of the silty sand materials under consideration. Moreover, the analysis of the available data show a noticeable success in exploring the prediction of the saturated hydraulic conductivity (K_s) based on the particle shape and packing density characteristics (R_r, S_r, e_max, and e_min) of the studied sand–silt mixture samples.     

Use of ultrasonic telemetry to determine the area of bait influence and trapping area of American lobster,Homarus americanus,traps

Using ultrasonic telemetry, we measured the distance of attraction to a baited trap and then used this value to calculate the “area of bait influence”. This value, along with the mean daily home range for the same animals, was used to calculate the “trapping area” of an individual trap. Lobsters (n = 25) were tracked inside a large underwater mesocosm containing a single baited lobster trap. During the study, 14 of the 25 lobsters approached the trap from a mean (+SEM) distance of 11.0 ± 0.7 m. Using this distance as the radius of a circle, the resulting circular area of bait influence was 380 m². The movements of 18 lobsters were used to calculate a mean daily home range of 1002.4 ± 195.7 m². The radius of a circle with this area (17.8 m) was then combined with the mean distance of bait attraction to calculate the trapping area, defined as: the total area from which the catch is drawn (2604.0 m²; a circle with a radius of 28.8 m or 17.8 m + 11.0 m). A demonstration of the potential use of empirical data about lobster home ranges, trap dynamics and area of bait influence to improve our understanding of the relationship between the density of lobsters on the bottom and catch is included.     

强光照和黑暗条件下刺参体壁的基因表达差异

参对光照变化非常敏感,研究刺参对光照的分子响应非常重要。本研究应用RNA测序获取了刺参暴露于强光（“强光”）、正常光照（“对照”）和完全黑暗（“黑暗”）环境下体壁的基因表达谱情况,通过“对照”与“黑暗”,“对照”与“强光”和“黑暗”与“强光”的比较,在|log₂ ratio|≥1和FDR≤0.001的标准下分别发现了1161、113和1705个差异表达基因（DEGs）。基因本体分析表明,“cellular process”和“binding”在“生物过程”和“分子功能”类别中的DEGs富集最多,而“cell”和“cell part”在“细胞组分”类别中的DEGs富集最多。将DEGs与Kyoto Encyclopedia基因和基因组数据库上的于214、41和229条通路进行比对,发现了51、2和57条通路分别显著富集。本研究发现的光特异性DEGs可作为深入研究刺参对光照变化的生化适应机制的重要目标基因。     

Are all patterns created equal? Cooperation is more likely in spatially simple habitats

Cooperative behaviours, such as aggregation with neighbouring conspecifics, can enhance resilience in habitats where risks (i.e. predation, physical disturbances) are high, exerting positive feedback loops to maintain a healthy population. At the same time, cooperation behaviours can involve some extra energy expenditures and increasing resource competition. For sessile reefs, like mussels, simulation models predict increased cooperation under increasing levels of environmental stress. Predation risk is viewed as a behaviour‐modifying stressor, but its role on cooperation mechanisms, such as likelihood of reciprocity, has not yet been empirically tested. This study harnesses this framework to understand how cooperation changes under different perceived levels of predation risk, using mussel beds as model of a complex “self‐organised” system. Hence, we assessed the context dependency of cooperation response in different “landscapes of fear,” created by changes in predator cues, substratum availability and body size. Our experiments demonstrated that i) cooperation in a mussel bed system increases when predator cues are present, but that this relationship was found to be both, ii) strongly context‐dependent, particularly upon substratum availability and iii) size‐dependent. That is, while cooperation is in general greater for larger individuals, the response to risk results in greater cooperation when alternative attachment substratum is absent, meaning that simpler landscapes may be perceived as riskier. The context dependency of structural complexity is also an essential finding to consider in a changing world where habitats are losing complexity and cooperative strategies should be maximised.     

Notes on the ecology and paleoecology of neothyrls,an endemic New Zealand brachiopod

Neothyris lecticularis (Deshayes, 1839) live mainly south o'f 44°S in waters 90–180 m (extremes 18–384 m) deep where bottom temperatures are always >7°c. Fossil N. “avails” (Hutton, 1886) in the early Pleistocene limestone at Castlepoint (41 °S) are associated with an assemblage of animals generioally the same as the living N. lenticularis assemblage of Foveaux Strait. The granular substrate occupied by the living animals is similar to the matrix of the Castlepoint limestone. Thus the early Pleistocene marine climate in 90–180 m at 43°S may have been about 5°c cooler than it is today; the possible use is mentioned of the presence of the fossil assemblage in studies of palaeoelimates.

Population analysis of living and fossil stocks show a constant bias toward the older age‐groups; this finding is discussed. Various ecological observations are recorded.     

Mississippi prodelta crusts: A clay fabric and geotechnical analysis

Abstract

"Crust”; zones, as defined by shear strength profiles, have been delineated in Mississippi prodelta sediments since the advent of the remote wire‐line probe. Attempts to map the distribution of the “crust”; on the prodelta have been hampered by sparsity of in situ measurements and its apparent lateral discontinuity. Evidence based on clay fabric, geotechnical properties, and the location of selected cores within certain geomorphic zones, suggests the “crusts”; are associated with zones of shearing during an episode of submarine sediment movement on the prodelta.

The clay fabric within the “crust”; zone differs from that found above and below in the high‐porosity sediments. A noticeable degree of clay platelet preferential alignment is characteristic of sediments within the “crust.”; This preferred orientation occurs as localizations rather than as an overall alignment of all the particles. The clay fabric of the higher‐porosity sediments above and below the “crust”; is typified by randomly arranged clay particles and domains, sharing edge‐to‐face contacts which create an open framework. Apparent increases in the coarse silt fraction in the “crust”; zone were observed initially in scanning electron and transmission electron micrographs and later confirmed by grain size analysis. The presence of this silt apparently contributes to the increase in shear strength within the “crust.”; Clay particle arrangement in close proximity to these larger grains is modified in such a manner as to reduce water contents. Transmission electron microscopy and scanning electron microscopy observations of the “crust”; reveal that the void ratio decreases, resulting in a concomitant reduction in the water content as reflected in the geotechnical properties profiles. The type of fabric exhibited by the “crust”; suggests a remolding and dewatering of initially porous silty clay sediments in response to shear stresses operating on the prodelta.

Core samples were recovered from sediments exhibiting a “crust”; in areas identified by other researchers as unstable, based on seismic and acoustic profiles and sidescan sonar records. The prodelta has been modified by a peripheral mudflow at the location where the cores were collected for this study.     

A convenient method for the determination of carbon in marine “net zooplankton”

Measurements of carbon in marine “net zooplankton” were made by use of a Leco 70 Second TC-12 Automatic Carbon Determinator. The instrument employs high-temperature (ca. 1600°C), dry-combustion and thermal-conductivity detection of the purified carbon-dioxide combustion product and oxygen carrier gas mixtures. The methodology developed in this study is convenient and rapid (ca. 70 sec per freeze-dried sample), with a mean error ($\text{±2σ/}\text{x}\text{·100}$) of ±4.4% at the 3 mg-C level and ±7.4% at the 10 mg-C level when benzoic acid is used as a standard, and ±9.2% at the 5 mg-C level and ±6.0% at the 10 mg-C level when casein is used as the standard. The technique was applied to the “splash zone” marine copepod Tigriopus californicus to obtain an average value of 38.6% C by weight. Concentrated samples of “net zooplankton” of varying size fractions were collected in the Monterey upwelling region over an eight-month period. Values up to 2000 mg-C/m² ocean surface (0–200 m) were observed in a seasonal cycle doubly peaked for some size fractions but not for others.     

Nyctiphanes australis (Euphausiacea) and an upwelling plume in western Cook Strait,New Zealand

Quantitative data are presented on the distribution of adult and larval stages of the euphausiid Nyctiphanes australis G. O. Sars, in western Cook Strait, New Zealand, an area influenced by an upwelling plume. The behaviour of N. australis in the Kahurangi Point region at different stages of its life history appears to ensure its maintenance, in general, over the continental shelf on an upwelling coast. Population structure at the source of the upwelling near Kahurangi Point differed from that in regions “down stream” from the plume. Nyctiphanes australis was most abundant at the “downstream” eastern end of the upwelling plume, and the evidence suggesting that the dense populations there may be resident is discussed. Possible reasons for low densities of furcilia II and III stages in the eastern plume region are considered.     

Terminology and units in optical oceanography

Abstract

This document presents fundamental terms describing the transfer of radiative energy and relevant optical properties of natural waters. These are primarily based upon the terminology of the “Système International d'Unités (SI)”; and the “International Commission on Illumination (CIE).’’ Quantities and Symbols as proposed in the present terminology follow and extend the terminology that was recommended by the Committee on Radiant Energy in the Sea (of the International Association of Physical Oceanography, IAPO), as published by Jerlov (1968, Optical Oceanography Elsevier Oceanography Series, Vol. 5; 1976, Marine Optics Elsevier Oceanography Series, Vol. 14).     

Growth, Production, and a Partial Energy Budget for the Amphipod, Talorchestia capensis (Crustacea; Talitridae) in the Eastern Cape, South Africa

Abstract. .A population of Talorchestia capensis was sampled in dune slacks over the period of one year. Two hatching periods, one in March and one in September, were observed. Growth was rapid, the amphipods reaching a size of 8.4 mm standard length in 18 months. Maximum growth occurred in spring and minimum growth in winter. Annual mortality rates for summer- and winter-hatched individuals were low, 0.22-y“¹ and 0.16-y”¹. Average production for the summer classes was 7.2g-y?‘ (dry mass) and for the winter classes 2.9-y“¹, with a P/B ratio of 2.25-y”’. Production values peaked during autumn and summer. Abundance and biomass estimates showed maxima during summer and minima in early spring. Reproductive output was low, 0.1 kJ ? m^-2 y“¹, indicating that 7 % of the total production is used for reproduction and 93 % for somatic production. The assimilated energy flow through the population was estimated to be 16.3 kJ m?² y?‘ and consumption about 81.6 kJ m^-2 y^_’.     

Geophysiology and Parahistology of the Interactions of Organisms with the Environment*

Abstract. Ecology and Global Ecology (GE) are terms by which the relations between the organism (or living matter as a whole) and the environment (or Earth as a whole) have been treated for almost a century. Geophysiology and Parahistology (PH) are terms slowly replacing older scientific thoughts jointly with an increasing number of modifications and alterations of the Darwinian Evolution (DE) concept. Somehow Geophysiology and Parahistology seem to describe evolution in a non-Darwinian domain. According to V.I. Vernadsky (1929,1930,1988) - the great Russian naturalist and biogeochemist - the biogeochemical processes on Earth are controlled by the force of living matter rather than by species associations developing in and with individual ecosystems as expressed by darwinian evolutionary terms. He also claimed that Goethe was incorrectly regarded as a predecessor of DE by some authors (including Darwin) and that “Natur” (nature) and “Lebendige Natur” (the totality of creatures) are two very different things for Goethe. Detailed analyses of microbial mat systems in the German Wadden Sea and in artificial hypersaline WInogradsky columns have shown that the totality of creatures and matter around them i.e., the “lebendige Natur”sensu Goethe or “living matter”sensu Vernadsky of such environments control to a considerable extent the structure, stability. and (geo-)morphology of sediments and thereby the geological structure of the living Earth. These structures do not follow the rules of sedimentation formulated by the laws of Stokes They represent growth structures (Aufwuchs), whose physics and dynamics are controlled by complex fractal systems. The factors controlling the ultimate shape and stabilisation potential of the eventually resulting rocks and fossils are comparable to tissue development in macroorganisms. Also, certain microbial associations in the sub-recent and in the fossil record may be compared to metazoan tissues. Chemical gradients in the sedimentary column, regulated by the interplay of living matter and sluggish (slow-reactive to non-reactive) compounds, combine to create a pattern of porosity and structure of the resulting deposits that clearly indicates microbial influences and especially those of extracellular polymeric substances on the morphology and texture. The combined effects of microbiota or living matter on the sedimentary record are described as parahistology of sediments in analogy of the histology of tissue on a geological scale. This conceptual living tissue made up of microbially generated rocks and ore deposits cycled through metabolic processes and forced into tissue-like structures by microbial biofilms and mats may extend down to the upper mantle of Earth and far up into the stratosphere when Earth is regarded as a living entity over geological periods. We may have to conceive Earth as a living specimen, which is breathing at a frequency of thousands of years instead of the normal physiological breathing rate of man or an insect. Macroorganisms in all terrestrial systems represent the transport and logistic media, which, however, utterly depend on myriads of intra-, inter-, and extracellular microbial symbiotic partners.     

Early scale growth characteristics of the New Zealand snapper,chrysophrys auratus (Forster), with reference to selection of a scale‐sampling site

Scales from 17 body areas of juvenile snapper, Chrysophyrs auratus (Forster), were examined to determine scale growth characteristics, with the aim of denning the most suitable body site for routine scale‐sampling. Least‐square regressions of fish length on scale measurement from 0+ fish were calculated for several body areas, and back‐calculations were made to fish length at first annulus (L₁) from a sample of 1+ fish, using both the “uncorrected” and “corrected” formulae.

The overall fish/scale relationship is curvilinear, but high correlation coefficients show that fish/scale regressions from 0+ snapper may be taken as essentially linear. Such regressions give hypothetical fish lengths at scale formation of 8–23 mm. Mid‐body scales form at 10–14 mm, caudal scales earlier, head scales later.

Back‐calculated L₁ values from each area were compared with the mean for the whole body. Using the uncorrected formula there is a general trend for them to be lower than the mean at the head and higher at the tail, while the mid‐body region shows minimum variation from the mean. These variations are caused at least partly by differences in time of scale formation. The corrected formula gives smaller L₁ variations and a mean back‐calculated L₁almost identical to an observed L₁ from independent length frequency data.

The observed variations in scale structure and growth suggest that the “pectoral area”, bounded by the lateral line and the ventral edge of the pectoral fin, is the most suitable site for scale sampling.     

Distribution of nitrous oxide dissolved in water masses in the eastern subtropical North Pacific and its origin inferred from isotopomer analysis

N₂O concentration and its isotopomer ratios were measured over a wide area from San Diego to Honolulu in the eastern subtropical North Pacific (ESNP). Waters in the study area had an N₂O maximum (38.2–50.5 nmol kg^?1) at 600–1000 m depth, which is similar to the profiles obtained previously in other areas in the North Pacific. We separated the seawater into five water masses (two for the surface layer, two for the middle layer, and one for the deep layer) and deduced N₂O production–consumption mechanisms in each water body by use of N₂O isotopomer ratios. The results showed that the mechanisms differ slightly among water masses. In the “coastal” surface layer, N₂O is produced by nitrification (NH₂OH oxidation). In the “open ocean” surface layer, it is produced mainly by nitrifier denitrification and to a lesser extent by nitrification under substrate-limited conditions. In both “upwelling” and “open ocean” middle layers it is produced mainly by denitrification and to a lesser extent by nitrifier denitrification. It is also partly reduced. In the deep layer, it is produced predominantly by denitrification with partial reduction. In this way, isotopomers aid elucidation of production–consumption mechanisms of N₂O in the sea even though the mechanisms cannot always be ascertained.     

Implications of gas content for predicting the stability of submarine slopes

Abstract

The behavior of gas‐laden, soft submarine soils subjected to changes in mean normal and shearing stresses is discussed. Information developed for partially saturated soils is extended to soft sediments. Calculations indicating that gas‐laden submarine soils generally have degrees of saturation in situ that exceed ～ 90% are presented. Therefore, it is suggested that insignificant error is introduced in predicting the effective stresses of soft sediments using the standard effective stress equation and neglecting the pore‐gas pressure.

The presence of gas is shown to permit volume changes of soft sediments under wave loadings. The compressibility of the gaswater pore fluid is quantified. The pore‐pressure response, related to the ratio of the compressibility of the pore fluid and soil structure, is shown to be similar to that of fully saturated soils. The relevance of “undrained”; shipboard tests to the prediction of slope stability is discussed. It is concluded that the presence of gas leads to undrained strengths, as measured on recovered samples, which are lower than those that occur in situ. The use of these measured strengths in stability calculations leads to conservative predictions of submarine slope stability.