The Ensemble Kalman Filter for Groundwater Plume Characterization: A Case Study

The Kalman filter is an efficient data assimilation tool to refine an estimate of a state variable using measured data and the variable's correlations in space and/or time. The ensemble Kalman filter (EnKF) (Evensen 2004, 2009) is a Kalman filter variant that employs Monte Carlo analysis to define the correlations that help to refine the updated state. While use of EnKF in hydrology is somewhat limited, it has been successfully applied in other fields of engineering (e.g., oil reservoir modeling, weather forecasting). Here, EnKF is used to refine a simulated groundwater tetrachloroethylene (TCE) plume that underlies the Tooele Army Depot‐North (TEAD‐N) in Utah, based on observations of TCE in the aquifer. The resulting EnKF‐based assimilated plume is simulated forward in time to predict future plume migration. The correlations that underpin EnKF updating implicitly contain information about how the plume developed over time under the influence of complex site hydrology and variable source history, as they are predicated on multiple realizations of a well‐calibrated numerical groundwater flow and transport model. The EnKF methodology is compared to an ordinary kriging‐based assimilation method with respect to the accurate representation of plume concentrations in order to determine the relative efficacy of EnKF for water quality data assimilation.     

An application of Ensemble Kalman Filter in integral-balance subsurface modeling

Data assimilation method provides a framework to decrease the uncertainty of hydrological modeling by sequentially incorporating observations into numerical model. Such a process involves estimating statistical moments of different order based on the evolution of conditional probability distribution function. Because of the nonlinearity of many hydrological dynamics, explicit and analytical solutions for moments of state distribution are often impossible. Evensen [J Geophys Res 99(c5): 10143–10162 (1994)] introduced Ensemble Kalman Filtering (EnKF) method to address such problems. We test and evaluate the performance of EnKF in fusing model predictions and observations for a saturated–unsaturated integral-balance subsurface model. We find EnKF improve the model predictions, and also we conclude a good estimate of state variance is essential for the success of EnKF.     

Sampling strategies and square root analysis schemes for the EnKF

The purpose of this paper is to examine how different sampling strategies and implementations of the analysis scheme influence the quality of the results in the EnKF. It is shown that by selecting the initial ensemble, the model noise and the measurement perturbations wisely, it is possible to achieve a significant improvement in the EnKF results, using the same number of members in the ensemble. The results are also compared with a square root implementation of the EnKF analysis scheme where the analyzed ensemble is computed without the perturbation of measurements. It is shown that the measurement perturbations introduce sampling errors which can be reduced using improved sampling schemes in the standard EnKF or fully eliminated when the square root analysis algorithm is used. Further, a new computationally efficient square root algorithm is proposed which allows for the use of a low-rank representation of the measurement error covariance matrix. It is shown that this algorithm in fact solves the full problem at a low cost without introducing any new approximations.     

Reduction of Used Memory Ensemble Kalman Filtering (RumEnKF): A data assimilation scheme for memory intensive,high performance computing

Reduction of Used Memory Ensemble Kalman Filtering (RumEnKF) is introduced as a variant on the Ensemble Kalman Filter (EnKF). RumEnKF differs from EnKF in that it does not store the entire ensemble, but rather only saves the first two moments of the ensemble distribution. In this way, the number of ensemble members that can be calculated is less dependent on available memory, and mainly on available computing power (CPU). RumEnKF is developed to make optimal use of current generation super computer architecture, where the number of available floating point operations (flops) increases more rapidly than the available memory and where inter-node communication can quickly become a bottleneck. RumEnKF reduces the used memory compared to the EnKF when the number of ensemble members is greater than half the number of state variables. In this paper, three simple models are used (auto-regressive, low dimensional Lorenz and high dimensional Lorenz) to show that RumEnKF performs similarly to the EnKF. Furthermore, it is also shown that increasing the ensemble size has a similar impact on the estimation error from the three algorithms.     

Impacts of localisation in the EnKF and EnOI: experiments with a small model

The performance of an inexpensive, ensemble-based optimal interpolation (EnOI) scheme that uses a stationary ensemble of model anomalies to approximate forecast error covariances, is compared with that of an ensemble Kalman filter (EnKF). The model to which the methods are applied is a pair of “perfect”, one-dimensional, linear advection equations for two related variables. While EnOI is sub-optimal, it can give results that are comparable to those of the EnKF. The computational cost of EnOI is typically about times less than that of EnKF, where is the ensemble size. We suggest that EnOI may provide a practical and cost-effective alternative to the EnKF for some applications where computational cost is a limiting factor. We demonstrate that when the ensemble size is smaller than the dimension of the model’s sub-space, both the EnKF and EnOI may require localisation around each observation to eliminate effects of sampling error and to increase the effective number of independent ensemble members used to construct an analysis. However, localisation can degrade an analysis if the length-scales of the localising function are too short. We demonstrate that, as the length-scale of the localising function is decreased, localisation can significantly compromise the model’s dynamical balances. We also find that localisation artificially amplifies high frequencies for applications of the EnKF. Based on our experiments, for applications where localisation is necessary, the length-scales of the localisation should be larger than the decorrelation length-scales of the variables being updated.     

The Local Ensemble Transform Kalman Filter with the Weather Research and Forecasting Model: Experiments with Real Observations

The local ensemble transform Kalman filter (LETKF) is implemented with the Weather Research and Forecasting (WRF) model, and real observations are assimilated to assess the newly-developed WRF-LETKF system. The WRF model is a widely-used mesoscale numerical weather prediction model, and the LETKF is an ensemble Kalman filter (EnKF) algorithm particularly efficient in parallel computer architecture. This study aims to provide the basis of future research on mesoscale data assimilation using the WRF-LETKF system, an additional testbed to the existing EnKF systems with the WRF model used in the previous studies. The particular LETKF system adopted in this study is based on the system initially developed in 2004 and has been continuously improved through theoretical studies and wide applications to many kinds of dynamical models including realistic geophysical models. Most recent and important improvements include an adaptive covariance inflation scheme which considers the spatial and temporal inhomogeneity of inflation parameters. Experiments show that the LETKF successfully assimilates real observations and that adaptive inflation is advantageous. Additional experiments with various ensemble sizes show that using more ensemble members improves the analyses consistently.     

Validation and application of an ensemble Kalman filter in the Selat Pauh of Singapore

The effectiveness of an ensemble Kalman filter (EnKF) is assessed in the Selat Pauh of Singapore using observing system simulation experiment. Perfect model experiments are first considered. The perfect model experiments examine the EnKF in reducing the initial perturbations with no further errors than those in the initial conditions. Current velocity at 15 observational sites from the true ocean is assimilated every hour into the false ocean. While EnKF reduces the initial velocity error during the first few hours, it fails after one tidal cycle (approximately 12 h) due to the rapid convergence of the ensemble members. Successively, errors are introduced in the surface wind forcing. A random perturbation ε is applied independently to each ensemble member to maintain the ensemble spread. The assimilation results showed that the success of EnKF depends critically on the presence of ε, yet it is not sensitive to the magnitude of ε, at least in the range of weak to moderate perturbations. Although all experiments were made with EnKF only, the results could be applicable in general to all other ensemble-based data assimilation methods.     

Hydrological data assimilation with the ensemble Kalman filter: Use of streamflow observations to update states in a distributed hydrological model

This paper describes an application of the ensemble Kalman filter (EnKF) in which streamflow observations are used to update states in a distributed hydrological model. We demonstrate that the standard implementation of the EnKF is inappropriate because of non-linear relationships between model states and observations. Transforming streamflow into log space before computing error covariances improves filter performance. We also demonstrate that model simulations improve when we use a variant of the EnKF that does not require perturbed observations. Our attempt to propagate information to neighbouring basins was unsuccessful, largely due to inadequacies in modelling the spatial variability of hydrological processes. New methods are needed to produce ensemble simulations that both reflect total model error and adequately simulate the spatial variability of hydrological states and fluxes.     

An approach to handling non-Gaussianity of parameters and state variables in ensemble Kalman filtering

The ensemble Kalman filter (EnKF) is a commonly used real-time data assimilation algorithm in various disciplines. Here, the EnKF is applied, in a hydrogeological context, to condition log-conductivity realizations on log-conductivity and transient piezometric head data. In this case, the state vector is made up of log-conductivities and piezometric heads over a discretized aquifer domain, the forecast model is a groundwater flow numerical model, and the transient piezometric head data are sequentially assimilated to update the state vector. It is well known that all Kalman filters perform optimally for linear forecast models and a multiGaussian-distributed state vector. Of the different Kalman filters, the EnKF provides a robust solution to address non-linearities; however, it does not handle well non-Gaussian state-vector distributions. In the standard EnKF, as time passes and more state observations are assimilated, the distributions become closer to Gaussian, even if the initial ones are clearly non-Gaussian. A new method is proposed that transforms the original state vector into a new vector that is univariate Gaussian at all times. Back transforming the vector after the filtering ensures that the initial non-Gaussian univariate distributions of the state-vector components are preserved throughout. The proposed method is based in normal-score transforming each variable for all locations and all time steps. This new method, termed the normal-score ensemble Kalman filter (NS-EnKF), is demonstrated in a synthetic bimodal aquifer resembling a fluvial deposit, and it is compared to the standard EnKF. The proposed method performs better than the standard EnKF in all aspects analyzed (log-conductivity characterization and flow and transport predictions).     

Data assimilation for unsaturated flow models with restart adaptive probabilistic collocation based Kalman filter

The ensemble Kalman filter (EnKF) has gained popularity in hydrological data assimilation problems. As a Monte Carlo based method, a sufficiently large ensemble size is usually required to guarantee the accuracy. As an alternative approach, the probabilistic collocation based Kalman filter (PCKF) employs the polynomial chaos expansion (PCE) to represent and propagate the uncertainties in parameters and states. However, PCKF suffers from the so-called “curse of dimensionality”. Its computational cost increases drastically with the increasing number of parameters and system nonlinearity. Furthermore, PCKF may fail to provide accurate estimations due to the joint updating scheme for strongly nonlinear models. Motivated by recent developments in uncertainty quantification and EnKF, we propose a restart adaptive probabilistic collocation based Kalman filter (RAPCKF) for data assimilation in unsaturated flow problems. During the implementation of RAPCKF, the important parameters are identified and active PCE basis functions are adaptively selected at each assimilation step; the “restart” scheme is utilized to eliminate the inconsistency between updated model parameters and states variables. The performance of RAPCKF is systematically tested with numerical cases of unsaturated flow models. It is shown that the adaptive approach and restart scheme can significantly improve the performance of PCKF. Moreover, RAPCKF has been demonstrated to be more efficient than EnKF with the same computational cost.     

Prediction and predictability of a catastrophic local extreme precipitation event through cloud-resolving ensemble analysis and forecasting with Doppler radar observations

Local extreme rain usually resulted in disasters such as flash floods and landslides. Upon today, it is still one of the most difficult tasks for operational weather forecast centers to predict those events accurately. In this paper, we simulate an extreme precipitation event with ensemble Kalman filter (EnKF) assimilation of Doppler radial-velocity observations, and analyze the uncertainties of the assimilation. The results demonstrate that, without assimilation radar data, neither a single initialization of deterministic forecast nor an ensemble forecast with adding perturbations or multiple physical parameterizations can predict the location of strong precipitation. However, forecast was significantly improved with assimilation of radar data, especially the location of the precipitation. The direct cause of the improvement is the buildup of a deep mesoscale convection system with EnKF assimilation of radar data. Under a large scale background favorable for mesoscale convection, efficient perturbations of upstream mid-low level meridional wind and moisture are key factors for the assimilation and forecast. Uncertainty still exists for the forecast of this case due to its limited predictability. Both the difference of large scale initial fields and the difference of analysis obtained from EnKF assimilation due to small amplitude of initial perturbations could have critical influences to the event's prediction. Forecast could be improved through more cycles of EnKF assimilation. Sensitivity tests also support that more accurate forecasts are expected through improving numerical models and observations.     

An effective method based on dynamic sampling for data assimilation in a global wave model

The ensemble Kalman filter (EnKF) performs well because that the covariance of background error is varying along time. It provides a dynamic estimate of background error and represents the reasonable statistic characters of background error. However, high computational cost due to model ensemble in EnKF is employed. In this study, two methods referred as static and dynamic sampling methods are proposed to obtain a good performance and reduce the computation cost. Ensemble adjustment Kalman filter (EAKF) method is used in a global surface wave model to examine the performance of EnKF. The 24-h interval difference of simulated significant wave height (SWH) within 1 year is used to compose the static samples for ensemble errors, and these errors are used to construct the ensemble states at each time the observations are available. And then, the same method of updating the model states in the EAKF is applied for the ensemble states constructed by a static sampling method. The dynamic sampling method employs a similar method to construct the ensemble states, but the period of the simulated SWH is changing with time. Here, 7 days before and after the observation time is used as this period. To examine the performance of three schemes, EAKF, static, or dynamic sampling method, observations from satellite Jason-2 in 2014 are assimilated into a global wave model, and observations from satellite Saral are used for validation. The results indicate that the EAKF performs best, while the static sampling method is relatively worse. The dynamic sampling method improves an assimilation effect dramatically compared to the static sampling method, and its overall performance is closed to the EAKF. In low latitudes, the dynamic sampling method has a slight advantage over the EAKF. In the dynamic or static sampling methods, only one wave model is required to run and their computational cost is reduced sharply. According to the performance of these three methods, the dynamic sampling method can treated as an effective alternative of EnKF, which could reduce the computational cost and provide a good performance of data assimilation.     

The Ensemble Kalman Filter: theoretical formulation and practical implementation

The purpose of this paper is to provide a comprehensive presentation and interpretation of the Ensemble Kalman Filter (EnKF) and its numerical implementation. The EnKF has a large user group, and numerous publications have discussed applications and theoretical aspects of it. This paper reviews the important results from these studies and also presents new ideas and alternative interpretations which further explain the success of the EnKF. In addition to providing the theoretical framework needed for using the EnKF, there is also a focus on the algorithmic formulation and optimal numerical implementation. A program listing is given for some of the key subroutines. The paper also touches upon specific issues such as the use of nonlinear measurements, in situ profiles of temperature and salinity, and data which are available with high frequency in time. An ensemble based optimal interpolation (EnOI) scheme is presented as a cost-effective approach which may serve as an alternative to the EnKF in some applications. A fairly extensive discussion is devoted to the use of time correlated model errors and the estimation of model bias.Responsible Editor: Jörg-Olaf Wolff     

Calibration of a Land Subsidence Model Using InSAR Data via the Ensemble Kalman Filter

The application of interferometric synthetic aperture radar (InSAR) has been increasingly used to improve capabilities to model land subsidence in hydrogeologic studies. A number of investigations over the last decade show how spatially detailed time‐lapse images of ground displacements could be utilized to advance our understanding for better predictions. In this work, we use simulated land subsidences as observed measurements, mimicking InSAR data to inversely infer inelastic specific storage in a stochastic framework. The inelastic specific storage is assumed as a random variable and modeled using a geostatistical method such that the detailed variations in space could be represented and also that the uncertainties of both characterization of specific storage and prediction of land subsidence can be assessed. The ensemble Kalman filter (EnKF), a real‐time data assimilation algorithm, is used to inversely calibrate a land subsidence model by matching simulated subsidences with InSAR data. The performance of the EnKF is demonstrated in a synthetic example in which simulated surface deformations using a reference field are assumed as InSAR data for inverse modeling. The results indicate: (1) the EnKF can be used successfully to calibrate a land subsidence model with InSAR data; the estimation of inelastic specific storage is improved, and uncertainty of prediction is reduced, when all the data are accounted for; and (2) if the same ensemble is used to estimate Kalman gain, the analysis errors could cause filter divergence; thus, it is essential to include localization in the EnKF for InSAR data assimilation.     

Dual state–parameter estimation of hydrological models using ensemble Kalman filter

Hydrologic models are twofold: models for understanding physical processes and models for prediction. This study addresses the latter, which modelers use to predict, for example, streamflow at some future time given knowledge of the current state of the system and model parameters. In this respect, good estimates of the parameters and state variables are needed to enable the model to generate accurate forecasts. In this paper, a dual state–parameter estimation approach is presented based on the Ensemble Kalman Filter (EnKF) for sequential estimation of both parameters and state variables of a hydrologic model. A systematic approach for identification of the perturbation factors used for ensemble generation and for selection of ensemble size is discussed. The dual EnKF methodology introduces a number of novel features: (1) both model states and parameters can be estimated simultaneously; (2) the algorithm is recursive and therefore does not require storage of all past information, as is the case in the batch calibration procedures; and (3) the various sources of uncertainties can be properly addressed, including input, output, and parameter uncertainties. The applicability and usefulness of the dual EnKF approach for ensemble streamflow forecasting is demonstrated using a conceptual rainfall-runoff model.     

State estimation of tidal hydrodynamics using ensemble Kalman filter

This paper presents a coupling of an ensemble Kalman filter (EnKF) with a discontinuous Galerkin-based, two-dimensional circulation model (DG ADCIRC-2DDI) to improve the state estimation of tidal hydrodynamics including water surface elevations and depth-integrated velocities. The methodology in this paper using EnKF perturbs the modeled hydrodynamics and bottom friction parameterization in the model while assimilating data with inherent error, and demonstrates a capability to apply EnKF within DG ADCIRC-2DDI for data assimilation. Parallel code development presents a unique aspect of the approach taken and is briefly described in the paper, followed by an application to a real estuarine system, the lower St. Johns River in north Florida, for the state estimation of tidal hydrodynamics. To test the value of gauge observations for improving state estimation, a tide modeling case study is performed for the lower St. Johns River successively using one of the four available tide gauging stations in model-data comparison. The results are improved simulations of water surface elevations and depth-integrated velocities using DG ADCIRC-2DDI with EnKF, both locally where data are available and non-locally where data are not available. The methodology, in general, is extensible to other modeling and data applications, for example, the use of remote sensing data, and specifically, can be readily applied as is to study other tidal systems.     

Application of data assimilation with the Root Zone Water Quality Model for soil moisture profile estimation in the upper Cedar Creek,Indiana

Data assimilation techniques have been proven as an effective tool to improve model forecasts by combining information about observed variables in many areas. This article examines the potential of assimilating surface soil moisture observations into a field‐scale hydrological model, the Root Zone Water Quality Model, to improve soil moisture estimation. The Ensemble Kalman Filter (EnKF), a popular data assimilation technique for nonlinear systems, was applied and compared with a simple direct insertion method. In situ soil moisture data at four different depths (5, 20, 40, and 60 cm) from two agricultural fields (AS1 and AS2) in northeastern Indiana were used for assimilation and validation purposes. Through daily update, the EnKF improved soil moisture estimation compared with the direct insertion method and model results without assimilation, having more distinct improvement at the 5 and 20 cm depths than for deeper layers (40 and 60 cm). Local vertical soil property heterogeneity in AS1 deteriorated soil moisture estimates with the EnKF. Removal of systematic bias in the forecast model was found to be critical for more successful soil moisture data assimilation studies. This study also demonstrates that a more frequent update generally contributes in enhancing the open loop simulation; however, large forecasting error can prevent more frequent update from providing better results. In addition, results indicate that various ensemble sizes make little difference in the assimilation results. An ensemble of 100 members produced results that were comparable with results obtained from larger ensembles. Copyright © 2011 John Wiley & Sons, Ltd.     

Using data assimilation method to calibrate a heterogeneous conductivity field conditioning on transient flow test data

A data assimilation method is developed to calibrate a heterogeneous hydraulic conductivity field conditioning on transient pumping test data. The ensemble Kalman filter (EnKF) approach is used to update model parameters such as hydraulic conductivity and model variables such as hydraulic head using available data. A synthetical two-dimensional flow case is used to assess the capability of the EnKF method to calibrate a heterogeneous conductivity field by assimilating transient flow data from observation wells under different hydraulic boundary conditions. The study results indicate that the EnKF method will significantly improve the estimation of the hydraulic conductivity field by assimilating continuous hydraulic head measurements and the hydraulic boundary condition will significantly affect the simulation results. For our cases, after a few data assimilation steps, the assimilated conductivity field with four Neumann boundaries matches the real field well while the assimilated conductivity field with mixed Dirichlet and Neumann boundaries does not. We found in our cases that the ensemble size should be 300 or larger for the numerical simulation. The number and the locations of the observation wells will significantly affect the hydraulic conductivity field calibration.