Spatio-temporal fluctuations in the distribution and abundance of demersal fish and epibenthic crustaceans in Yaquina Bay,Oregon

A total of over 32,000 demersal fish and epibenthic crustaceans belonging to 62 species were caught in 42 biweekly trawls from 10 stations in Yaquina Bay, Oregon, during 1967 and 1968. English sole,Parophrys vetulus, was the most abundant species. Seventeen species (13 fishes and 4 crustaceans) constituted 95% of the catch. Total numerical abundances of both individuals (mainly juvenile fishes) and species were greatest in the lower 12 km of the estuary during summer and early fall, a period of water mass stability and increased water temperature and salinity. This section of the estuary is used by many immature fishes and crustaceans as a “nursery area”. These fishes generally emigrate from the estuary as subadults in the fall around the onset of the rainy season. The fewest species were taken in January 1968 from the central, upper-estuarine, and riverine areas of the bay, this being a time when high rainfall and river discharge result in low salinity and temperature. Crustaceans (shrimp and subadult crabs) were generally most abundant in late winter and early spring throughout the estuary. Changes in diversity indices reflected variations in community structure, the influence of migratory species and juvenile fishes, and seasonal changes in dominance. Year-to-year fluctuations in abundance may be due, in part, to local hydrographic and meteorological conditions along the central Oregon coast.     

The effect of aquaculture practices on the benthic macroinvertebrate community of a lagoon system in the Bay of Cádiz (southwestern Spain)

Monthly quantitative Ekman-Birge grab sampling was used to characterize and compare the composition and structure of the benthic macroinvertebrate community inhabiting semi-enclosed polyculture lagoons (SPL) (three sampling sites) and enclosed monoculture ponds (EMP) (two sampling sites) of a lagoonal system of the Bay of Cádiz. The two areas differed considerably in habitat characteristics and aquaculture management. The SPL area was characterized by low rates of water exchange, low fish densities, and the presence of a macroalgal cover. In the EMP area, there was a complete exchange of water daily (by pumping) and a supply of food pellets, density of fish was high, and no vegetative cover was present. There were considerable differences in species composition between habitats with different culture methods: 11 of the 21 most abundant species were exclusive to one or the other. Several epibenthic species were abundant in the polyculture lagoon but were low in density or were absent in monoculture ponds. Some infaunal species, on the other hand, were more abundant in the monoculture ponds. Univeriate measures of community structure (abundance and biomass, Margalef’s species richness, Shannon-Wiener diversity, and Pielou’s evenness indices) did not indicate significant differences between the SPL and EMP areas. Conversely, the abundance-biomass comparison (ABC) method indicated that, on average, the macrobenthic community was moderately disturbed in the SPL and undisturbed in the EMP areas. Multidimensional scaling (MDS) ordination and hierarchical cluster analysis (Bray-Curtis similarity measure) revealed the occurrence of two main benthic assemblages that corresponded to the aquaculture methods. The different rates of water exchange for the two aquaculture practices seem to have contributed to differences in the composition and structure of the benthic communities.     

Comparison of plant species diversity with different plant communities in deciduous forests

Species diversity is one of the most important indices used for evaluating the sustainability of forest communities. This study aims to characterize the forest communities and to identify and compare the plant species diversity in the study area. For this purpose, 152 relevés were sampled by a randomized-systematic method, using the Braun-Blanquet scale. Classification of the vegetation was conducted by the twinspan algorithm. Four communities, including Querco-Carpinetum betulii, Carpineto-Fagetum Oriental, Rusco-Fagetum Oriental and Fagetum Oriental were recognized. Species richness, Shannon, and Simpson indices were applied to quantify diversity of the different communities. Turkey test was used to investigate the differences in the species richness, diversity and evenness indices among the different communities. The results illustrate that Querco-Carpinetum betulii and Carpineto-Fagetum Oriental communities are significantly more diverse than Rusco-Fagetum Oriental and Fagetum Oriental communities. The spatial structure of the releves becomes more ‘homogenous’ and the dominance structure changes: the proportion of beech-forest species is gradually increasing. At the same time, the number of species per unit area decreases constantly, reaching eventually the value comparable to that recorded for hornbeam forest. Generally, species diversity is inversely correlated with the dominance of shade tolerant climax species.     

Multiscale Diversity in the Marshes of the Georgia Coastal Ecosystems LTER

Factors that maintain genetic and species diversity may act in concert in natural ecosystems. Here, we investigate correlations between genetic diversity (in eight salt marsh species) and community species diversity. A significant positive correlation existed between genetic diversity and species richness, although the relationship was not significant for any species individually. Nonetheless, four of the eight comparisons showed strong positive relationships between genetic and species diversity. Additionally, several abiotic variables were used in a model selection procedure to determine what site-level characteristics might drive differences in genetic diversity in this system. The rate of larval influx, as measured by barnacle abundance on Spartina alterniflora, was the strongest predictor of site-level genetic diversity in our samples. Our results suggest that estuarine management efforts should consider recruitment rates when selecting areas for protection.     

Larval Brachyuran Crab Timing and Distribution in Relation to Water Properties and Flow in a High-Latitude Estuary

Crab larval dispersal and, thus, adult population size can be influenced by oceanographic conditions, especially in highly dynamic and variable environments such as high-latitude estuaries. This study's primary goal was to understand larval timing, abundance, and distribution in relation to oceanographic effects between the more estuarine inner and more oceanic outer part of the subarctic estuary of Kachemak Bay (south-central Alaska, USA). Temperature and salinity measurements and plankton tows were taken along the boundary between the two bay parts from 31 March to 28 October 2008 on spring and neap tides. Summer water flow and stratification in Kachemak Bay were chiefly buoyancy driven, and predominant flow patterns were not affected by the large tidal range in the region. Larvae of seven brachyuran species were found over the sampling period, with seasonally different peak abundances. Larval spatial distribution patterns, presence of most larval stages for each species, and their seasonal timing and persistence within the water column suggest that most species are locally transported within or close to Kachemak Bay. The larval assemblage was correlated with seasonal changes in water temperature, and peak abundances of some species coincided with spring tides and/or frontal systems between the in- and outflow regions of the bay. The strong influence of freshwater on the local circulation pattern in the summer indicates that larval transport will likely be strongly affected by future changes in glacial melt and precipitation.     

Nonnative Species in British Columbia Eelgrass Beds Spread via Shellfish Aquaculture and Stay for the Mild Climate

Nonnative species cause economic and ecological impacts in habitats they invade, but there is little information on how they spread and become abundant. This is especially true for nonnative species in native Zostera marina eelgrass beds in coastal British Columbia, Canada, which play a vital role in estuarine ecosystems. We tested how nonnative species richness and abundance were related to both arrival vectors and environmental factors in northeast Pacific eelgrass. Using correlation tests and generalized linear models, we examined how nonnative macroinvertebrates (benthic, epifaunal, and large mobile) and some algae species were related to arrival vectors (shipping and aquaculture) and environmental factors (climate variables, human population density, and native richness and abundance). We found 12 nonnative species, 50 % with known negative impacts within eelgrass habitats. For benthic organisms, both nonnative richness and abundance were strongly correlated with shellfish aquaculture activities, and not with shipping activity. For epifaunal nonnative richness and abundance, neither vector was significantly correlated. Climate (temperature and salinity) helped explain nonnative richness but not abundance; there was no relationship of nonnative richness or abundance to native species richness and abundance or population density. Results suggest that aquaculture activities are responsible for many primary introductions of benthic nonnative species, and that temperature and salinity tolerances are responsible for post-introduction invasion success. While aquaculture and shipping vectors are becoming increasingly regulated to prevent further international spread of nonnative species, it will be important when managing nonnatives to consider secondary spread from intraregional transport through local shellfish aquaculture and shipping.     

The abundance and diversity of larval and juvenile fish in a tropical estuary

The larval and juvenile fish of the Cayenne river estuary (French Guiana, South America) were sampled at two stations from June 1989 until October 1990. A total of 52,989 individuals from 59 species, some still incompletely identified, were collected. Three families, Engraulidae, Gobiidae and Sciaenidae, accounted for over 97% of the total number of juveniles. The analysis of data over this period showed low diversity, and a difference in diversity between the two sampling locations (H′ = 1.24 and 1.68). The results conform to some theoretical models of abundance that suggest a relative equilibrium of juvenile assemblages. In contrast, the seasonal variations in diversity and abundance and the results of a correspondence analysis showed significant differences in species distribution and in their relative abundance at the two sampling locations at certain periods, mainly in the rainy season. Our study indicates that, in spite of an apparent stability, the year to year variation in salinity and freshwater inputs could affect juvenile recruitment of some species and induces modifications in the composition of larval and juvenile estuarine fish assemblages.     

Macroalgal distribution patterns in a shallow, soft-bottom lagoon, with emphasis on the nonnativeGracilaria vermiculophylla andCodium fragile

We determined the distribution of macroalgae in Hog Island Bay, a shallow coastal lagoon in Virginia, USA, seasonally at 12 sites from 1998 to 2000 and at 3 representative sites from 2000 to 2002. We analyzed macroalgal biomass, taxonomic richness, and abundance of two non-native species, the cryptic invaderGracilaria vermiculophylla and the conspicuousCodium fragile, with respect to season, location (mainland, mid lagoon, barrier island sites), and elevation (intertidal, subtidal). Taxonomic richness, total algal biomass, and nonnative biomass peaked in the summer months when temperature and light availability were highest. A few stress tolerant and ephemeral algae dominated the algal assemblage.G. vermiculophylla constituted 74% of the entire algal biomass, was the most abundant alga in all seasons, locations, and elevation levels, and was positively correlated with taxonomic richness and abundance of filamentous species.Ulva curvata, Bryopsis plumosa, andC. fragile accounted for an additional 16% of the algal biomass. There are distinct habitats in Hog Island Bay that can be classified into low diversity-low biomass regions near the mainland and barrier islands and high diversity-high biomass regions in the open mid lagoon, where abundant shells for attachment and intermediate levels of water column nutrients and turbidity likely create better growth conditions. Taxonomic richness and biomass were higher in subtidal than intertidal zones, presumably due to lower desiccation stress. This study provides an example of how a single invasive species can dominate an entire assemblage, both in terms of biomass (being most abundant in all seasons, locations, and tidal levels) and species richness (correlating positively with epiphytic filamentous taxa). By adding hard-substratum structural complexity to a relatively homogenous soft-substratum system,G. vermiculophylla increases substratum availability for attachment and entanglement of other algal species and enhances local diversity. Without widespread and abundantG. vermiculophylla, taxa likePolysiphonia, Ceramium, Bryopsis, Ectocarpus, andChampia would likely be much less common. This study also highlights the importance of using DNA analysis of voucher specimens in monitoring programs to accurately identify cryptic invaders.     

Understanding the Impacts of Climate Change: an Analysis of Inundation,Marsh Elevation,and Plant Communities in a Tidal Freshwater Marsh

Tidal freshwater marshes around the world face an uncertain future with increasing water levels, salinity intrusion, and temperature and precipitation shifts associated with climate change. Due to the characteristic abundance of both annual and perennial species in these habitats, even small increases in early growing season water levels may reduce seed germination, seedling establishment, and late-season plant cover, decreasing overall species abundance and productivity. This study looks at the distribution of tidal freshwater marsh plant species at Jug Bay, Patuxent River (Chesapeake Bay, USA), with respect to intertidal elevation, and the relationship between inundation early in the growing season and peak plant cover to better understand the potential impacts and marsh responses to increased inundation. Results show that 62% of marsh plant species are distributed at elevations around mean high water and are characterized by narrow elevation ranges in contrast with species growing at lower elevations. In addition, the frequency and duration of inundation and water depth to which the marsh was exposed to, prior to the growing season (March 15–May 15), negatively affected peak plant cover (measured in end-June to mid-July) after a threshold value was reached. For example, 36 and 55% decreases in peak plant cover were observed after duration of inundation threshold values of 25 and 36% was reached for annual and perennial species, respectively. Overall, this study suggests that plant communities of tidal freshwater marshes are sensitive to even small systematic changes in inundation, which may affect species abundance and richness as well as overall wetland resiliency to climate change.     

黑河中下游荒漠区植物多样性分布对土壤水分变化的响应

基于对黑河流域中下游荒漠区植被和土壤生境的调查分析,以土壤水分在各调查样地中的差异来反映研究区的生态水文特征,采用种的丰富度和多度来代表荒漠植物多样性研究了荒漠植物,包括隐花植物多样性分布对土壤水分变化的响应。土壤水分变化不仅直接影响着荒漠植物的多样性,而通过影响其它生境因子又间接地影响着多样性的维持。因此,如何维持中下游相对稳定的土壤水分来源是该区荒漠植物多样性保育今后所要面临的挑战。     

The Impact of Mangrove Prop-Root Epibionts on Juvenile Reef Fishes: A Field Experiment Using Artificial Roots and Epifauna

A field experiment was established in Bocas Del Toro, Panama to examine the relationship between sessile organisms living on mangrove prop roots and fish communities. Artificial mangrove roots (AMR) with different sets of artificial (AE) or real epibionts were established in five different locations in two separate years. Fish species in each plot were identified, counted, and their size estimated by visual census for 15 days in each replicate. In the artificial mangrove plots, the treatments with the most heterogeneous structure had significantly greater abundance of most families and species richness of fish in both years of the experiment. AMR plots with AEs attracted a more abundant and diverse fish assemblage than those with live epibionts, which had lower three-dimensional structure. All of the AMR plots had significantly greater fish abundance than comparable plots of sea grass alone. The location of the replicate also made a significant difference to fish abundance. The data indicate that prop-root epibionts can enhance fish abundance and diversity in mangroves, although the relationship may depend on the specific nature of the epibionts and fishes present.     

贵州水城仲河剖面二叠纪-三叠纪之交底栖群落的物种多样性与功能多样性转变

为了定量化恢复晚二叠世末期生物大灭绝对底栖群落的物种多样性和功能多样性的影响,对浅海碎屑岩台地相区的贵州水城仲河剖面开展宏体化石采集和分析,识别和划分古群落,选择优势度、香农指数、均匀度等代表物种多样性指数,生态功能群数量和功能均匀度代表功能多样性指数. 共采集1 340枚化石标本,经鉴定得到30属33种,其中双壳类可归纳为两个生物带:晚二叠世长兴期的Hunanopecten exilis顶峰带和早三叠世Griesbachian早期的Pteria ussurica variabilis顶峰带. 根据化石属种的地层分布、保存状况,结合聚类分析方法识别出3个古群落:Astartella obliqua-Tethyochonetes quadrata群落、Pteria ussurica variabilis-Claraia wangi群落和Pteria ussurica variabilis-Unionites canalensis群落. 自晚二叠世长兴期末期至早三叠世Griesbachian早期,古群落的优势度上升、香农指数降低、均匀度下降,功能群丰富度降低,功能均匀度上升,这指示晚二叠世末生物大灭绝对浅海碎屑岩相区的底栖群落的组成和功能均有显著的破坏. 此外,结合华南浅海和深海相区的古群落数据,发现底栖群落的物种多样性指数和功能多样性指数在晚二叠世末生物大灭绝中均遭受损失,但是浅海底栖群落受影响较高.      

Abundance and size of larval fishes outside the entrance to Beaufort Inlet, North Carolina

Synoptic ichthyoplankton sampling was conducted on two transects, one on either side of Beaufort Inlet, North Carolina, during the winter immigration season of seven ocean-spawned, estuarine-dependent fishes;Brevoortia tyrannus (Atlantic menhaden),Leiostomus xanthurus (spot),Micropogonias undulatus (Atlantic croaker),Lagodon rhomboides (pinfish),Paralichthys albigutta (Gulf flounder),P. dentatus (summer flounder), andP. lethostigma (southern flounder). Densities and lengths of larvae were significantly different among sampling dates, with distance offshore, and between sides of the inlet. Flood-tide stage had minimal effect on larval densities and lengths except forP. albigutta andP. lethostigma. Changes in larval densities with distance offshore were not coherent among species; densities ofB. tyrammus increased offshore whereas densities of the other species decreased offshore. Average larval densities on a sampling date were coherent among species. Patterns in larval lengths were also coherent among the four non-flounder species. Larval densities outside of Beaufort Inlet were correlated with larval densities inside of Beaufort Inlet. Larval densities outside of Beaufort Inlet were also correlated with the north component of the wind, nearshore water temperature, and distance to the mid-shelf front. Differences in larval density across the inlet were significantly correlated with the east component of the wind. The patterns in larval densities outside of Beaufort Inlet were complex and apparently influenced by both the physical processes that supply larvae to the nearshore region and nearshore physical dynamics.     

The effects of using wood treated with chromated copper arsenate in shallow-water environments: A review

Studies published over the past several years have documented that copper, chromium, and arsenic leach from pressure-treated wood placed in estuaries, and that these toxic metals accumulate in nearby sediments and biota. We have found bioaccumulation and deleterious effects in the epibiotic (“fouling”) community, particularly in poorly flushed areas and on new wood. The epibiota showed reduced species richness, diversity, and biomass. Barnacles and encrusting bryozoa that settled on new treated wood grew more slowly than those that settled on untreated wood or plastic substrate. In laboratory studies, trophic transfer of the contaminants from epibiota to their consumers has also been demonstrated. We have also found accumulation of the treatment metals in the fine-grained fraction of nearby sediments and in the benthic infauna. Infauna also had reduced species richness and diversity in sediments adjacent to treated-wood structures. While standard toxicity tests with amphipods did not demonstrate acute toxicity of these sandy sediments, sublethal effects on development were seen in juvenile mysids. Overall, the extent and severity of effects of pressure-treated wood in an estuary depends on the amount and age of the wood and the degree of dilution by water movements.     

Palaeoecological patterns of change in marine invertebrate faunas across the End-Triassic mass extinction event: Evidence from Larne,Northern Ireland

The End-Triassic mass extinction event [ETE] (201.5 Ma) marks a drastic turnover and loss of > 50% of marine biodiversity. Suggested environmental factors include extreme climate change and global carbon-cycle perturbations linked to Central Atlantic Magmatic Province (CAMP) volcanism. Considerable attention has been paid to disentangling the causes and selectivity of the ETE, whilst downplaying the patterns of change in the structure and functioning of marine paleofauna. Here we provide detailed quantitative information from across the Triassic-Jurassic boundary at Waterloo Bay, Larne, Northern Ireland, to describe patterns of changes in different palaeoecological parameters across the ETE. The analysis was based on abundance data of species sampled from approximately 1 m intervals through the sequence. Dominance and richness were estimated using rarefaction techniques and β-diversity index, and distinctness diversity indices were calculated. Changes in species composition were evaluated by multivariate analysis (nMDS, ANOMSIM and SIMPER). Rank abundance models were fitted, and functional diversity were estimated based on an ecospace model, applied to each sampled unit to detect changes in structure and ecological complexity. Across the ETE three distinctive states were identified: the pre-extinction state (Westbury Formation), characterised by an assemblage with high species richness and ecological redundancy, and with low taxonomic variation and functional diversity. The extinction state (Cotham and Langport members) represents a shift of the marine ecosystem, where > 70% marine species disappears decreasing the ecosystems functioning the marine ecosystem around 80%. The recovery state (Lias Group), commencing some ~ 150 ky after the extinction, with ecologically complex assemblages as new taxa colonised, increasing variation in taxonomic distinctness and new contributing ecological traits and functional richness through the Hettangian. The palaeoecological patterns described here are robust enough to discount possible facies effects, but more important, is consistent with other studies reported globally, and demonstrates that the ecological signals detected in this study are real.     

Expression of the Estuarine species minimum in littoral fish assemblages of the Lower Chesapeake Bay Tributaries

Species richness declines to a minimum (artenminimum) in the oligohaline reach of estuaries and other large bodies of brackish water. To date, observations of this feature in temperate estuaries have been largely restricted to benthic macroinvertebrates. Five years of seine data collected during the summers of 1990–1995 in the major tidal tributaries to the lower Chesapeake Bay were examined to see if this feature arose in estuarine fish assemblages. Estimates of numerical species richness (alpha diversity) and rates of species turnover between sites (beta diversity) were generated via rarefaction and detrended correspondence analysis. Two spatial attributes of the distribution of littoral fish species along salinity gradients in the tributaries of the lower Chesapeake Bay were revealed: (1) a species richness depression in salinities of 8–10% and (2) a peak in the rate of species turnover associated with the tidal freshwater interface (salinities of 0–2%). Expression of the minimum is influenced by the physical length of the salinity gradient and the interaction between a species’ salinity preferences and tendency to make long excursions from favorable habitats.     

Collection efficiency of seine and rotenone samples from tidal creeks,cape fear river,North Carolina

Efficiency, defined as the percentage of the total number of individuals captured from a known area of tidal creek (blocked with seines), was studied on six occasions from December 1976 through August 1978. Sampling was conducted at two stations near the Cape Fear River, Southport, North Carolina using either seines or rotenone. For the three most abundant species collected by each method, the range for seine efficiencies (60.6±19.4 to 78.0±9.4%) was generally narrower than that for rotenone (29.6±9.5 to 57.7±14.8%). However, overall species richness was better represented by rotenone, the mean percentage of species captured for all samples was 92.1% versus 70.3% for seines. Consistent patterns in efficiency for individual species with regard to size, age, or water temperature were absent. A comparison of individual collections with that of the sample “universe” trapped between the block nets indicated that a representative sample of the extant nekton community was taken by each method.     

Relationship of larval-stage growth and mortality to recruitment of striped bass,Morone saxatilis, in Chesapeake Bay

Variable recruitments of striped bass were hypothesized to be caused by factors influencing growth and survival of larvae. Eggs and larvae were collected in the Potomac River from 1987 to 1989 and in the Upper Chesapeake Bay in 1988 and 1989 to estimate abundances, larval growth and survival rates, and environmental variability. Larval batch dates, ages, and growth and mortality rates were estimated from analysis of otolith daily increments. A retrospective analysis of Potomae River ichthyoplankton data from 1974–1977 and 1980–1982 provided additional estimates of larval abundances and vital rates for comparative purposes. Significant correlations betweens vital rates (growth and mortality) and abundances of striped bass larvae, and the Maryland juvenile recruitment index indicated that recruitment level may be fixed during the larval stage. The ratio of mean daily growth and mortality rates (G:Z) of larvae in the Potomac River for 1987–1989 was highest in 1987 when the juvenile index was relatively high, and was lower in 1988 and 1989 when juvenile indices were low. In the Upper Bay, mean larval growth rate, survival rate, and the G:Z ratio were highest in 1989 when the juvenile index also was high. In both tributaries, abundances of late-stage larvae (8 mm SL) were correlated with juvenile-stage recruitment indices. The retrospective analysis provided additional evidence that Potomac River larval abundances and G:Z ratios were positively correlated with juvenile recruitment indices in the 1974–1977 and 1980–1982 periods. Conditions favoring striped bass larval abundance and potential recruitment differed between the Potomac River and the Upper Bay. In the Potomac, late-stage larval abundances coincided with late-season water temperatures that were relatively warm, low river discharges and high, late-season densities of zooplankton prey, which favored larval growth. In the Upper Bay, the high abundance of late-stage larvae in 1989 relative to 1988 was attributed to a higher egg production that was coincident with high zooplankton abundances.     

Historical Comparison of Fish Community Structure in Lower Chesapeake Bay Seagrass Habitats

Seagrass beds provide important habitat for fishes and invertebrates in many regions around the world. Accordingly, changes in seagrass coverage may affect fish communities and/or populations, given that many species utilize these habitats during vulnerable early life history stages. In lower Chesapeake Bay, seagrass distribution has contracted appreciably over recent decades due to decreased water clarity and increased water temperature; however, effects of changing vegetated habitat on fish community structure have not been well documented. We compared fish community composition data collected at similar seagrass sites from 1976–1977 and 2009–2011 to investigate potential changes in species richness, community composition, and relative abundance within these habitats. While seagrass coverage at the specific study sites did not vary considerably between time periods, contemporary species richness was lower and multivariate analysis showed that assemblages differed between the two datasets. The majority of sampled species were common to both datasets but several species were exclusive to only one dataset. For some species, relative abundances were similar between the two datasets, while for others, there were notable differences without directional uniformity. Spot (Leiostomus xanthurus) and northern pipefish (Syngnathus fuscus) were considerably less abundant in the contemporary dataset, while dusky pipefish (Syngnathus floridae) was more abundant. Observed changes in community structure may be more attributable to higher overall bay water temperature in recent years and other anthropogenic influences than to changes in seagrass coverage at our study sites.