Microbial nitrogen cycling at the saltwater–freshwater interface

Microbial communities inhabiting “subterranean estuaries” along the subsurface freshwater–saltwater continuum determine the fate of nitrogen discharged to coastal waters. Little is known about the microbes that comprise these communities, or what their ecological and biogeochemical responses will be to increased salinity resulting from saltwater intrusion and aquifer salinization. This review covers basic aspects of the nitrogen cycle relevant to the coastal subsurface and provides a framework for predicting the types of microbes and nitrogen transformations that exist in different subterranean estuary systems. Literature concerning the freshwater–saltwater mixing zones of surficial estuaries, where microbial communities are better characterized, is also reviewed to explore what is known about the impact of increasing salinity on both the community composition and biogeochemical function of the microbial assemblage. Collectively, these studies suggest that salinization will alter microbial community composition for all functional groups involved in nitrogen cycling, and may lead to decreases in nitrification and coupled nitrification-denitrification, and increases in dissimilatory nitrate reduction to ammonium (DNRA). Future collaboration between hydrogeologists and microbial ecologists is needed to fully predict the impact of saltwater intrusion on subsurface microbial communities.     

Influence of a Drought Event on Hydrological Characteristics of a Small Estuary on the Amazon Mangrove Coast

The effects of atypical climatic conditions, such as those of a drought event, are remarkably accentuated in minor estuaries filled with sediments and with reduced or sporadic freshwater input, where the salinity intrusion is pronounced. To understand these effects, hydrological and hydrodynamic parameters were evaluated during a drought period in a small estuary located on the eastern Amazon coast in northern Brazil. Five campaigns were conducted between June 2012 and June 2013. Samples were collected from the surface and bottom layer every 3 h over a 25-h period at three stations of the Taperaçu Estuary. To compare drought and post-drought periods, in terms of salinity and chlorophyll-a, data was recorded until June 2015. Taperaçu is a relatively shallow estuary of the Amazon coastal zone, which is characterized by the absence of any direct fluvial discharge, although it does receive freshwater input from adjacent wetlands, as well as less saline waters from the Caeté Estuary through the Taici Creek. Hydrological variables were controlled by rainfall levels and the tidal range, and the water became more saline and more oxygenated, with reduced dissolved nutrient and chlorophyll-a concentrations when precipitation decreased. A significant variation was found between the months of June 2012 (most intense drought) and 2013 (less intense drought). The connection to the neighboring Caeté Estuary and adjacent mangroves and wetlands contributed to the influx of nutrient-enriched waters. Overall, then, it is hoped that the results of this study can contribute to the understanding of the effects of drought events in other minor estuaries on the highly indented Amazon coast, as well as in other areas of the equatorial zone with similar environmental characteristics.     

Toward a unified theory of tidally-averaged estuarine salinity structure

Equations are developed for the tidally-averaged, width-averaged estuarine salinity and circulation in a rectangular estuary. Width and depth may vary along the length of the channel, as may coefficients of vertical turbulent mixing and along channel diffusion. The system is reduced to a single first-order, nonlinear, ordinary differential equation governing the section-averaged salinity. A technique for specifying the ocean boundary condition is given, and solutions are found by numerical integration. Under different assumptions for the diffusion it is possible to reproduce the few existing analytical solutions, in particular the Hansen and Rattray (1965) Central Regime solution, and Chatwin's (1976) solution. The mathematical framework allows easy comparison of the results of different channel geometries and mixing coefficients. Of particular interest is the along-channel distribution of the diffusive fraction of up-estuary salt flux. It is shown that the Hansen and Rattray solution is always diffusion-dominated near the mouth. A theory is presented for estimating the diffusion coefficient within a tidal excursion of the mouth. It is shown that the resulting rapid along-channel increase of diffusion may explain some observed patterns of salinity structure: a decrease in both stratification and along-channel salinity gradient near the mouth. The theory is applied to the Delaware Estuary and Northern San Francisco Bay, and shows reasonable agreement with observed sensitivities of salt intrusion distance to river flow.     

Effects of Wave–Current Interaction on Salt Intrusion During a Typhoon Event in a Highly Stratified Estuary

Wave–current interaction (WCI) is important in modulating hydrodynamics and water mixing in estuaries, and thereby the transport of water-borne materials. However, the effects of WCI on salt transport and salt intrusion in estuaries during storm events have been rarely examined. In the present study, we use a coupled atmosphere–ocean–wave–sediment transport (COAWST) modeling system to investigate the effects of WCI on salt intrusion in the highly stratified Modaomen Estuary during Typhoon Hagupit (2008). The model is validated by the measured wave, water elevation, and surface salinity data, and several diagnostic model experiments are conducted. WCI increases the storm surge by 0.8 m at the peak surge (25% of the total surge height). The wave-breaking-induced momentum flux and the Stokes drift increase the magnitude of the landward flow by 0.3 m s^?1 (30% of the total landward flow). In addition, the waves increase water mixing by 2–4 times compared with that without waves. Hence, WCI significantly increases the landward advective salt transport and decreases the steady shear transport. The net effect of the WCI is a significant increase of salt import and salt intrusion during the typhoon event. However, in the aftermath of the storm, the imported salt water is rapidly flushed out by the increased river discharge, and the estuary regains its stratification within one day.     

The effect of freshwater inflow on meiofaunal and macrofaunal populations in the Guadalupe and Nueces Estuaries,Texas

Two estuaries with very different inflow characteristics were compared to test the hypothesis that benthic standing crops are enhanced by freshwater inflow. Assuming predation pressure is similar in both estuaries, this would imply that freshwater inflow enhances secondary production. The Guadalupe Estuary had 79 times more freshwater inflow than the Nueces Estuary, and a third of the salinity. The Guadalupe had higher macrofaunal densities and biomass than the Nueces, and both parameters increased with decreasing salinity within the Guadalupe Estuary. Macrofauna density increased with increasing salinity in the Nueces Estuary, due to invasion by marine species. However, meiofauna population size responds differently than macrofauna. Meiofaunal densities were higher in the low-inflow Nueces Estuary, and increased with increasing salinity in both estuaries. Macrofauna diversity increased with salinity, both within and between estuaries. The macrofauna response supports the hypothesis that increased freshwater inflow stimulates secondary production. A review of past benthic studies in these estuaries and the historical climatic patterns indicate that wet years with high inflow result in increased macrofaunal productivity. Since, macrofaunal diversity decreased with lower salinity both within and between the estuaries, the enhanced productivity is due to increases by freshwater and estuarine species that can tolerate low salinities. Increased macrofaunal densities are associated with decreasing meiofaunal densities. The latter result could be due to either increased macrofaunal competition with or predation on meiofauna, or a lack of low-salinity tolerance by meiofauna.     

A comparative study of nutrient behavior along the salinity Gradient of tropical and temperate estuaries

The differences and similarities between near-pristine estuaries of different latitudinal regions were examined by selecting three tropical systems from North Queensland, Australia (Jardine, Annan, Daintree) and three temperate systems from Scotland, United Kingdom (Inverness, Cromarty, Dornoch Firths) for comparison. Although estuaries from the different regions have a number of unifying features, such as salinity gradients, tidal variations and terrestrial inputs they also have a number of important differences. The most distinct of these is the timing and variability of the major physical forcings on the estuary (e.g., river flow, insolation). The three tropical estuaries were much more episodic than their temperate counterparts, with a much more dynamic salinity structure and more variable riverwater concentrations, so that delivery of material to the estuary is dominated by short-lived flood events. In contrast, seawater concentrations were more stable in the tropical estuaries due to a more constant input of insolation, resulting in year round biological activity. There was biological removal of dissolved inorganic phosphorus in the low salinity region of the tropical Jardine and Daintree estuaries and a low salinity input of nitrate in the tropical Annan estuary most likely due to nitrification in the bottom sediments, and the biological reaction zone in the tropical Annan Estuary was flushed out of the estuarine basin to the edge of the offshore plume during a flood. Similar effects were not seen in the temperate Inverness, Cromarty, and Dornoch Firths. Similarities between estuaries include mid-estuary inputs of ammonium which were seen in both the temperate and tropical estuaries, although they occur under vastly contrasting conditions of low river discharge and periods of flood, respectively. Five of the estuaries show a general increase in dissolved inorganic phosphorus concentrations towards the sea during low flows, reflecting their pristine condition, and all six estuaries had low salinity silicate maxima probably sourced from the dissolution of freshwater biogenic silicate that has been carried seaward, except in the tropical estuaries during the dry season when a benthic source is proposed.     

The Effects of Wind,Runoff and Tides on Salinity in a Strongly Tidal Sub-estuary

Measurements over an annual cycle of longitudinal and vertical salinity distributions in a small sub-estuary, the Tavy Estuary, UK, are used to illustrate the dependence of salt intrusion and stratification on environmental variables. The interpretations are aided by vertical profiling and near-bed data recorded in the main channel and on the mudflats. Generally, high water (HW) salt intrusion at the bed is close to the tidal limit and is dominated by runoff and winds, with decreasing salt intrusion associated with increasing runoff and increasing up-estuary winds (or vice versa). Tidal effects are not statistically significant because of two compensating processes: the long tidal excursion, which is comparable with the sub-estuary length for all but the smallest neap tides, and the enhanced, near-bed, buoyancy-driven salt transport that occurs at small neap tides close to the limit of saline intrusion. The effect of wind on HW surface salt intrusion in the main channel is not statistically significant, partly because it is obscured by the opposing local and estuary-wide effects of an up-estuary or down-estuary wind stress. These processes are investigated using a simple tidal model that incorporates lateral, channel–mudflat bathymetry and reproduces, approximately, observed channel and mudflat velocities. Surface salinity at HW increases with tidal range because of enhanced spring-tide vertical mixing—a process that also reduces salinity stratification. Stratification increases with runoff because of increased buoyancy inputs and decreases with up-estuary winds because of reduced near-bed salt intrusion. Stratification and plume formation are interpreted in terms of the bulk and estuarine Richardson Numbers, and processes at the confluence of the sub-estuary and main estuary are described.     

Methods for determining minimum freshwater inflow needs of Texas bays and estuaries

In response to legislative directives beginning in 1975, the Texas Water Development Board (TWDB) and the Texas Parks and Wildlife Department (TPWD) jointly established and currently maintain a data collection and analytical study program focused on determining the effects of and needs for freshwater inflows into the state's 10 bay and estuary systems. Study elements include hydrographic surveys, hydrodynamic modeling of circulation and salinity patterns, sediment analyses, nutrient analyses, fisheries analyses, freshwater inflow optimization modeling, and verification of needs. For determining the needs, statistical regression models are developed among freshwater inflows, salinities, and coastal fisheries. Results from the models and analyses are placed into the Texas Estuarine Mathematical Programming (TxEMP) model, along with information on salinity viability limits, nutrient budgets, fishery biomass ratios, and inflow bounds. The numerical relationships are solved within the constraints and limits, and optimized to meet state management objectives for maintenance of biological productivity and overall ecological health. Solution curves from the TxEMP model are verified by TWDB’s hydrodynamic simulation of estuarine circulation and salinity structure, which is evaluated against TPWD’s analysis of species abundance and distribution patterns in each bay and estuary system. An adequate system-wide match initially verifies the inflow solution. Long-term monitoring is recommended in order to verify that implementation of future water management strategies maintain ecological health of the estuaries and to provide an early warning of needs for adaptive management strategies.     

The application of a segmented tidal mixing model to the Great Bay Estuary,N.H.

Measurements show that in general salt is vertically well-mixed everywhere in the Great Bay Estuary, New Hampshire except near the river entrances at the head of the estuary. Dyer and Taylor’s (1973) modified version of Ketchum’s segmented tidal prism model has been applied to the Great Bay Estuarine System in order to predict high and low water salinity distribution for a specified river flow. The theory has been modified here to account for the mixing which occurs at the junction of two branches of an estuary. The mixing parameter, which in this model is related to the tidal excursion of water in the estuary, has been determined for different segments in the estuary on the basis of a comparison between predictions and a comprehensive data set obtained for a low river flow period. Using a mixing parameter distribution based on the low river flow calibration procedure the salinity distribution has been predicted for high river flow. The resulting salinity distribution compares favorably with observations for most of the estuary. The corresponding flushing times for water parcels entering at the head of the estuary during periods of low and high river flow is 54.5 and 45.9 tidal cycles respectively.     

Landward Propagation of Saline Waters Following Closure of a Bar-Built Estuary: Russian River (California,USA)

We investigate the evolution of the salt field in a bar-built estuary after the tidal inlet is closed by sediment, isolating the estuary from the ocean. We show that seawater trapped by inlet closure in the Russian River Estuary, CA, undergoes a two-stage landward intrusion process that leads to widespread salt stratification throughout the estuary. This salinity intrusion extends to distances of several kilometers from the beach—into the “inner estuary” that is separated from the “outer estuary” by shallow sills and typically devoid of saline waters during tidal conditions when the mouth is open. We describe landward movement of saline waters during six closure events in 2009 and 2010, based on repeat boat-based conductivity-temperature-depth (CTD) surveys and bottom-mounted acoustic Doppler current profilers (ADCPs). While sills block the initial landward motion of dense saline waters due to gravitational adjustment (first stage of intrusion), these same sills facilitate a wind-induced, one-direction valve mechanism through which saline waters are pumped into the inner estuary. Saline waters that crest the shallow sill can drain into deeper pools in the inner estuary as a pulsed gravity current (second stage of intrusion). We use empirical orthogonal function (EOF) analysis to identify an internal seiche in the outer estuary that results in uplift of pycnocline waters during the night at the boundary to the inner estuary. EOF analysis of inner estuary currents and a horizontal Richardson number are used to suggest that nocturnal gravity current events in the inner estuary (beyond the blocking sill) occur as pulses initiated by the internal seiche in the outer estuary.     

人类活动对河口咸水入侵的影响

采用新安江水库建库前后及钱塘江河口治江缩窄前后的实测氯度资料分析了大型调节水库增加了枯水径流,治江缩窄改变了潮汐特性和进潮量这两类人类活动对咸水入侵的影响,又采用一维咸水入侵数学模型进行了上述影响的验证和计算分析,结论基本一致.     

Can Saltwater Intrusion Affect a Phytoplankton Community and Its Net Primary Production? A Study Based on Satellite and Field Observations

Net primary production (NPP) by phytoplankton is a crucial regulator of the carbon cycle and other biological processes in estuaries. Under the impacts of rising sea levels, most estuaries are experiencing increased saltwater intrusion. To determine how these changes in intrusion affect phytoplankton communities and their NPP, a study was performed in the Pearl River Estuary (PRE), China. The results based on monthly global ocean NPP satellite products from 2003 to 2015 show that NPP generally decreased from the north (the upper outlet) to the south (the estuary mouth) in the PRE, whereas temporally, NPP in the rainy season (April to September) exhibited an inverted V-shaped curve, with a maximum value in July and was generally higher than that in the dry season (October to the following March). Field observations of salinity increased from north to south in the PRE, but phytoplankton species and cell numbers decreased from outlets toward the outer estuary. Further analysis showed that NPP and phytoplankton species were positively correlated (R²?~?0.5), whereas NPP and salinity were negatively correlated (R²?~?0.4). Overall, saltwater intrusion in the dry season increased salinity and changed the phytoplankton species abundance and composition, and it may inhibit phytoplankton growth, thereby decreasing NPP.     

A conceptual model of estuarine freshwater inflow management

As humans continue to influence the quantity, timing, and quality of freshwater input to estuaries, it is becoming increasingly common for policies to be enacted that mandate the establishment of freshwater inflow criteria that will serve to preserve and protect estuarine ecosystems. This paper reviews the scientific literature describing how changes in freshwater inflow affect estuaries, proposes a conceptual model that explores the roles of scientists, citizens, politicians, and managers in the management of freshwater inflow to estuaries, and uses the model to explore the ways in which freshwater inflow is managed in a variety of estuaries. The scientific review is organized to provide an overview of the connections between freshwater inflow (in terms of the quantity, quality, and timing of water delivery), estuarine conditions (such as salinity and concentrations of dissolved and particulate material), and estuarine resources (such as the distribution and abundance of organisms), and to highlight our understanding of the causative mechanisms that underlie the relationships among these variables. The premise of the conceptual model is that the goal of estuarine freshwater inflow policy is to protect those resources and functions that we as a society value in estuaries, and that management measures use scientific information about the relationships among inflow, conditions, and resources to establish inflow standards that can meet this goal. The management approach can be inflow-based (flow is kept within some prescribed bounds under the assumption that taking too much away is bad for the resources), condition-based (inflow standards are set in order to maintain specified conditions in the estuary), or resource-based (inflow standards are set based on the requirements of specific resources), but each of these is carried out by regulating inflow. This model is used as a framework to describe the development of freshwater inflow criteria for estuaries in Texas, Florida, and California.     

Prediction of tidal excursion length in estuaries due to the environmental changes

Tidal excursion is an important parameter that indicates hydraulic and mixing characteristics of estuarine environments. Prediction of the tidal excursion length provides a proper tool for environmental management of estuaries. In this study, the governing equations of the salinity transport were scaled first to recognize the effective dimensionless parameters of tidal excursion length. Then, a laterally averaged two-dimensional numerical model called CE-QUAL-W2 was used as a virtual laboratory to simulate the salinity intrusion length. Existing field data of Limpopo estuary, as a case study, was used for calibration and verification of the model and reasonable agreement was observed between the model results and the field data. Finally, the verified model was used to assess the influences of the governing parameters. The results showed that simple power functions can be used to describe the effects of dimensionless parameters obtained by scaling of the governing equations. As a result, a new formula in form of a power function was derived to predict the tidal excursion length based on the geometric and hydrodynamic characteristics of alluvial estuaries. Comparison of the computed tidal excursion lengths using the derived formula with the observed measurements in several estuaries showed the robustness of the developed formula.     

含盐风暴潮溃堤洪水数值模拟及风险分析

为了研究三角洲河口风暴潮溃堤时的盐水运动规律,建立一、二维耦合的盐度数学模型对风暴潮溃堤时的盐水运动进行模拟。模型考虑洪泛区建筑物对盐水运动的影响以及溃口的渐变发展过程。用2008年多个测站的实测数据对河网模型的潮位和盐度计算结果进行了验证。将模型应用于珠江三角洲河网某近海溃口风暴潮溃堤的盐水运动模拟,并绘制了最大盐度等值面图。计算结果表明,该溃口大部分区域的溃堤积水盐度超过了4psu,因此,溃堤洪水的高盐度积水影响不容忽视。通过比较“溃堤”和“不溃堤”两种情况下的河网盐度计算结果,发现上游河道的溃堤分流增大了河道的纳潮量,促使涨潮量增大,增大了下游河网的咸潮上溯风险,减弱了上游来流对咸潮的压制效果。     

Chloride contamination in construction aggregates due to periodic saline water intrusion: a case study in the Kaluganga River Estuary, Sri Lanka

The Kaluganga River Estuary is one of the main sources of construction sand in Sri Lanka. Salt water intrusion along this estuary due to extensive sand mining has increased over the years. Thus, the focus of the current research is to understand the relationship between river sand mining, salt water intrusion, and the resultant effects on construction sand. Two surveys were conducted along the Kaluganga Estuary along an 11 km stretch from the river mouth at predetermined intervals to measure depth water quality profiles, and to collect sediment samples. These surveys were carried out during maximum spring tide; first in a dry period and then in a wet period, to understand hydrographic effects on the quality of river sands. Sand samples were analysed for absolute chloride content and grain size distribution. Results showed significant salt water intrusion during the dry period, averaging 2,307 μS cm^?1 in surface waters throughout the surveyed 11 km stretch along with 3,818 μS cm^?1 (average) in bottom waters up to 5.6 km upstream from the river mouth causing above normal chloride content in the bottom sandy sediments. The high chloride content in bottom sands was recorded up to 5.5 km from the river mouth making them unsuitable for construction purposes. However, during wet period, salt water intrusion levels in the bottom waters were insignificant (average 61 μS cm^?1) and the chloride content in bottom sediments was very low. This study highlighted the requirement for regulations on river estuary sandmining for construction purposes.     

The importance of suppression of turbulence by stratification on the estuarine turbidity maximum

A simple numerical model demonstrates that the reduction in turbulence due to stratification greatly enhances the trapping of suspended sediment that occurs at the estuarine turbidity maximum. In moderately and highly stratified estuaries the turbulent diffusivity decreases markedly between the region upstream of the salinity intrusion, where the turbulence is uninhibited by salt stratification, and the stratified regime within the salinity intrusion, where turbulence is reduced by the inhibitory influence of salt stratification. This reduction in turbulent diffusion results in a reduction in the quantity of sediment that can be carried by the flow, causing sediment to be trapped near the landward limit of the salinity intrusion. This trapping process occurs at the same location as that due to the estuarine convergence, but it appears to be many times more effective at trapping silt-size particles. A model is formulated that is similar to Festa and Hansen's (1978) model of the estuarine turbidity maximum, with the addition of a stratification-dependent eddy diffusivity. For silt-size sediment particles, the model indicates as much as a 20-fold increase in the trapping rate with inclusion of the stratification effect. it is likely that this mechanism is important in many partially mixed and highly stratified estuaries.     

Response times of salinity in relation to changes in freshwater inflows in the Lower Hillsborough River, Florida

The Lower Hillsborough River, Florida is a short (16 km) riverine estuary which has a dam located at its upstream end. Salinity below the dam is influenced by freshwater that flows over or through the structure. Depending on location in the estuary, the response of salinity to changes in upstream freshwater inflows is normally not instantaneous, but lags behind the freshwater release. An analytical approach and a laterally averaged two-dimensional hydrodynamic model were used to examine the response time of salinity in the Lower Hillsborough River to changes in freshwater inflows from the upstream reservoir. A series of case studies were conducted using the model to determine how salinity in the river within one kilometer below the dam would respond to changes in freshwater inflows. The model results suggest that the time lag of salinity in the river depends on whether the upstream freshwater inflows are increasing or decreasing, as well as their magnitude. While the time lag for salinity is about six to eight days for decreasing inflows, it is much shorter for increasing inflows depending on the magnitude of the flow release.     

Dynamics of the turbidity maximum zone in a micro-tidal estuary: Hawkesbury River, Australia

Bed sediment, velocity and turbidity data are presented from a large (145 km long), generally well-mixed, micro-tidal estuary in south-eastern Australia. The percentage of mud in the bed sediments reaches a maximum in a relatively narrow zone centred ≈30–40 km from the estuary mouth. Regular tidal resuspension of these bed sediments produces a turbidity maximum (TM) zone in the same location. The maximum recorded depth-averaged turbidity was 90 FTU and the maximum near-bed turbidity was 228 FTU. These values correspond to suspended particulate matter (SPM) concentrations of roughly 86 and 219 mg l^?1, respectively. Neither of the two existing theories that describe the development and location of the TM zone in the extensively studied meso- and macro-tidal estuaries of northern Europe (namely, gravitational circulation and tidal asymmetry) provide a complete explanation for the location of the TM zone in the Hawkesbury River. Two important factors distinguish the Hawkesbury from these other estuaries: (1) the fresh water discharge rate and supply of sediment to the estuary head is very low for most of the time, and (2) suspension concentrations derived from tidal stirring of the bed sediments are comparatively low. The first factor means that sediment delivery to the estuary is largely restricted to short-lived, large-magnitude, fluvial flood events. During these events the estuary becomes partially mixed and it is hypothesized that the resulting gravitational circulation focuses mud deposition at the flood-determined salt intrusion limit (some 35 km seaward of the typical salt intrusion limit). The second factor means that easily entrained high concentration suspensions (or fluid muds), typical of meso- and macro-tidal estuaries, are absent. Maintenance of the TM zone during low-flow periods is due to an erosion-lag process, together with a local divergence in tidal velocity residuals, which prevent the TM zone from becoming diffused along the estuary axis.     

千岛湖配水工程对钱塘江河口盐水入侵影响

杭州市第二水源千岛湖配水工程（简称配水工程）的实施将引起富春江水库下泄流量及过程改变,从而对钱塘江河口盐水入侵产生影响。建立考虑涌潮作用的二维盐度数值模型,在验证钱塘江河口潮位和盐度的基础上,预测配水工程实施对河口盐水入侵距离和重要取水口含氯度超标时间的影响。研究表明:配水工程实施后,上游富春江水库若按现状调度方案,对枯水年影响大,咸水上溯距离增加3.7 km,沿岸取水口的可取水时间缩短0.2~3.6 d,丰、平水年盐水入侵和引水前相当;通过水库的优化调度,可基本消除枯水年引水造成的盐水入侵影响。为减少配水工程实施的盐水入侵影响,采用水库的优化调度模式是必要的。