Molecular phylogeny of the genus <Emphasis Type="Italic">Chondracanthus</Emphasis> (Rhodophyta), focusing on the resurrection of <Emphasis Type="Italic">C. okamurae</Emphasis> and the description of <Emphasis Type="Italic">C. cincinnus</Emphasis> sp. nov.

Determining the taxonomic status of the red algal genus Chondracanthus based on morphological characters is challenging due to the similarity and high degree of plasticity of the thallus. Since the taxonomic history of several Chondracanthus species remains unclear, we analyzed the plastid rbcL and mitochondrial COI genes of the specimens from Korea and Japan, in combination with morphological observations, to examine their phylogenetic relationships. Our results confirmed the distinction of C. okamurae, which is separated from C. intermedius, and identified a novel species, C. cincinnus sp. nov. Three species (C. okamurae, C. intermedius and C. cincinnus) formed a monophyletic clade with C. tenellus. C. okamurae is distinguished by linear, narrow, cylindrical to compressed, slightly recurved axes, and a high-intertidal to subtidal distribution. It was collected from Korea and Japan, while C. intermedius was identified from Japan only. A new species, Chondracanthus cincinnus sp. nov., is characterized by linear, compressed, strongly recurved axes, and a low-intertidal to subtidal distiribution. Based on the molecular phylogeny using rbcL and COI data, we herein resurrect C. okamurae as a distinct species and identify C. cincinnus as a new species.     

Age determination and growth rate of <Emphasis Type="Italic">Mactra chinensis</Emphasis> (Bivalvia: Mactridae) by external rings and chondrophore growth bands

Age, growth and mortality of Mactra chinensis were investigated during the period from October 2012 to September 2013 in Busan, South Korea. The monthly variation of the marginal index (MI) of the shell and chondrophore showed that the ring of this species was formed once a year during July. We estimated the age of M. chinensis by reading the external rings on the shell and the growth bands of the chondrophore to compare growth parameters between the two growth characters. The age of this species ranged from 0 to 8 years (shell-based age reading) and from 0 to 10 years (chondrophore-based age reading). Based on external rings and growth bands of chondrophore for the same period, the von Bertalanffy growth functions were expressed by the equation, L _t = 101.53[1-exp {-0.15(t + 0.75)}] and L _t = 90.03[1-exp {-0.20(t + 0.50)}], respectively. The likelihood test showed that there was a significant difference in L _∞ (P < 0.001), K (P < 0.001), to (P < 0.001) estimated from non-linear regression between the two growth characters.     

Pathologic survey on the Manila clam <Emphasis Type="Italic">Ruditapes philippinarum</Emphasis> (Adams and Reeve 1850) from Haeju off the western coastal Yellow Sea

Pathologic condition of Manila clam, Ruditapes philippinarum collected from Haeju off the west coast of North Korea in February and March 2007 was investigated in this study. The diagnostics included a protozoan parasite, Perkinsus olseni, the brown ring disease (BRD) caused by bacteria Vibrio tapetis and metazoan parasites Trematod and Cestod. P. olseni infection was examined using histology and Ray’s fluid thioglycollate medium (RFTM) assay along with Choi’s NaOH digestion technique. Trematode and cestode infection was also examined from the histology. A total of 140 clams with 35–45 mm in shell length (2–3 years old) were analyzed. Condition factor (CF), a ratio of the wet tissue weight to the shell dry weight, ranged from 0.445±0.074 (February) to 0.544±0.132 (March). Total body burden of P. olseni (i.e. infection intensity) ranged from 18,644±37,755 (February) to 26,933±80,611 cells/g wet tissue (March) with the prevalence of 76.7–43.3% (March) respectively. Prevalence of trematode and cestode infection in February and March varied 22.5–25.0 and 15.0–22.5% respectively. Infection intensity of V. tapetis ranged 1–2 and the prevalence was 1.4 (February) and 5.7% (March). Prevalence and infection intensity of P. olseni in clams from Haeju was comparatively lower than those of clams reported on the west coast of Korea. BRD and the other metazoan parasite infection were also relatively lower or similar to the condition of the clams reported previously. CF of Haeju clams was also relatively higher than the clams in Gyeonggi Bay and Taean, suggesting that Haeju clams had relatively better pathologic and health condition.     

Effects of temperature on growth,photophysiology, Rubisco gene expression in <Emphasis Type="Italic">Prorocentrum donghaiense</Emphasis> and <Emphasis Type="Italic">Karenia mikimotoi</Emphasis>

To explore the effects of temperature changes on dinoflagellate bloom succession in the coastal waters of the East China Sea, changes in the growth, photophysiology, and Rubisco gene expression of Prorocentrum donghaiense and Karenia mikimotoi, two harmful algal species, were investigated at different temperatures (16 to 28°C). The maximal specific growth rate and the maximal mRNA expression of Rubisco gene in P. donghaiense and K. mikimotoi occurred at 20 and 24°C, respectively. The photosynthetic activity of P. donghaiense was generally stable, but K. mikimotoi photosynthesis increased when temperatures rose from 16 to 28°C. The effective photochemical efficiency (F _q ^′ /F _m ^′ ) and the maximal relative electron transfer rate (rETR_max) of K. mikimotoi increased significantly with increasing temperature, and the lowest and highest values occurred at 16 and 28°C, respectively. It seems that P. donghaiense has higher photosynthetic capacity than K. mikimotoi due to its higher F _q ^′ /F _m ^′ , rETR_max, and photosynthetic efficiency (α). However, K. mikimotoi has a higher growth rate than P. donghaiense. These results suggest that the photosynthetic activity and genetic responses of dinoflagellates are species-dependent. It is likely that temperature changes affect species composition during blooms, leading to the observed patterns of bloom succession.     

High mortality and poor growth of green mussels, <Emphasis Type="Italic">Perna viridis</Emphasis>, in high chlorophyll-<Emphasis Type="Italic">a</Emphasis> environment

The current study was carried out from May 2014 to April 2015 to estimate the stock status of P. viridis in Marudu Bay. The gonad development was monitored by histological examination, while the population parameters including asymptotic length (L_∞), growth coefficient (K), mortality rate (Z, F and M), exploitation level (E) and recruitment of P. viridis were estimated using the lengthfrequency data. Results of the current study demonstrated that P. viridis in Marudu Bay spawned throughout the year with two major peaks, one in April to May and another one in October to December. The recruitment pattern was continuous with the peak in May to June 2014, which corresponded to the first spawning peak in April. However, no significant recruitment was observed from the second spawning peak due to the difference in spawning timing between male and female populations. The estimated asymptotic length (L_∞), growth coefficient (K), total mortality (Z), natural mortality (M), fishing mortality (F) and growth performance (ф) of P. viridis in Marudu Bay were estimate to be 117 mm, 0.97 yr^-1, 4.39 yr^-1, 1.23 yr^-1, 3.16 yr^-1 and 4.123, respectively. The exponent b of the lengthweight relationship was 2.4 and exploitation level (E) was 0.72. The high mortality, low condition indices and negative allometric of P. viridis in Marudu Bay is caused by a lack of suitable food in the surrounding water.     

Physiological and biochemical responses of <Emphasis Type="Italic">Prorocentrum minimum</Emphasis> to high light stress

Prorocentrum minimum is a common bloomforming photosynthetic dinoflagellate found along the southern coast of Korea. To investigate the adaptive responses of P. minimum to high light stress, we measured growth rate, and generation of reactive oxidative species (ROS), superoxide dismutase (SOD), catalase (CAT), and malondialdehyde (MDA) in cultures exposed to normal (NL) and high light levels (HL). The results showed that HL (800 μmol m^?2 s^?1) inhibited growth of P. minimum, with maximal inhibition after 7–9 days. HL also increased the amount of ROS and MDA, suggesting that HL stress leads to oxidative damage and lipid peroxidation in this species. Under HL, we first detected superoxide on day 4 and H₂O₂ on day 5. We also detected SOD activity on day 5 and CAT activity on day 6. The level of lipid peroxidation, an indicator of cell death, was high on day 8. Addition of diphenyleneiodonium (DPI), an NAD(P)H inhibitor, decreased the levels of superoxide generation and lipid peroxidation. Our results indicate that the production of ROS which results from HL stress in P. minimum also induces antioxidative enzymes that counteract oxidative damage and allow P. minimum to survive.     

Estimation of spawning area of <Emphasis Type="Italic">Pisodonophis sangjuensis</Emphasis> Ji and Kim, 2011 (Pisces: Ophichthidae) based on leptocephali size and distribution

Pre-metamorphic leptocephali of Pisodonophis sangjuensis (n = 91, 10.4?90.2 mm in total length, TL) were collected in the East China Sea for the first time. Pre-metamorphic leptocephali of P. sangjuensis, which were identified using mitochondrial DNA cytochrome c oxidase subunit I gene (mtDNA COI), are characterized by various combinations of morphological characters: 8 moderate to pronounced gut loops with the kidney terminating on the 6-7th loops; and 8 subcutaneous pigment patches on the tail just ventral to the notochord. Pisodonophis sangjuensis leptocephali were more numerously collected offshore than inshore around Jeju Island. The smallest leptocephali (< 15.0 mm TL) were collected from the south far from Jeju Island, and the largest leptocephali (> 100.0 mm TL) were collected from around Jeju Island and the southern coast of Korea. Our findings indicate that P. sangjuensis spawns offshore south of Jeju Island that is an area associated with high water temperature, and then the hatched leptocephali are transported to Jeju Island or the southern coast of Korea by the Tsushima Warm Current.     

Morphological identification of <Emphasis Type="Italic">Alexandrium</Emphasis> species (Dinophyceae) from Jinhae-Masan Bay,Korea

Outbreaks of paralytic shellfish poisoning (PSP) and dense blooms caused by Alexandrium species in Jinhae-Masan Bay, Korea have been nearly annual events for many years. However, excluding some Alexandrium species responsible for PSP, there are no critical reports on the morphology of Alexandrium species in this bay. To identify the Alexandrium species based on detailed morphological features, vegetative cells collected water samples and established by the incubation of resting cysts isolated from sediment trap samples were analyzed. Four species of Alexandrium were identified: Alexandrium affine, A. fundyense, A. catenella, and A. insuetum. Morphological features of these species were basically consistent with those outlined in previous studies. However, the ventral pore and the connecting pore on the sulcal plate, which have been accepted as diagnostic characteristics for the identification of A. fundyense and A. catenella, need to be reevaluated, indicating that useful morphological features for identifying these two species should be recommended to avoid confusion in the classification of species in genus Alexandrium.     

New records of three <Emphasis Type="Italic">Paraprionospio</Emphasis> species (Polychaeta: Spionidae) from Korean waters

The spionid polychaete Paraprionospio pinnata (Ehlers 1901) has been widely reported from Korean waters. We examined some specimens belonging to the genus Paraprionospio that had been collected from Korean waters, and identified them as Paraprionospio coora Wilson, 1990, Paraprionospio cordifolia Yokoyama, 2007 and Paraprionospio patiens Yokoyama, 2007, which are new to the fauna of Korea. The present study suggests misidentification of the specimens that have been previously reported as P. pinnata from Korean waters.     

Dissolved organic phosphorus utilization and alkaline phosphatase activity of the dinoflagellate <Emphasis Type="Italic">Gymnodinium impudicum</Emphasis> isolated from the South Sea of Korea

This study investigated alkaline phosphatase (APase) activity and dissolved organic and inorganic phosphorus utilization by the harmful dinoflagellate Gymnodinium impudicum (Fraga et Bravo) Hansen et Moestrup isolated from the South Sea of Korea. Under conditions of limited phosphorus, observation of growth kinetics in batch culture yielded a maximum growth rate (μ_max) of 0.41 /day and a half saturation constant (Ks) of 0.71 μM. In time-course experiments, APase was induced as dissolved inorganic phosphorus (DIP) concentrations fell below 0.83 μM, a threshold near the estimated Ks; APase activity increased with further DIP depletion to a maximum of 0.70 pmol/cell/h in the senescent phase. Thus, Ks may be an important index of the threshold DIP concentration for APase induction. G. impudicum utilizes a wide variety of dissolved organic phosphorus compounds in addition to DIP. These results suggest that DIP limitation in the Southern Sea of Korea may have led to the spread of G. impudicum along with the harmful dinoflagellate Cochlodinium polykrikoides in recent years.     

Five <Emphasis Type="Italic">Oncaea</Emphasis> species (Copepoda,Poecilostomatoida, Oncaeidae) from the Korean waters,with notes on the spatio-temporal distribution of Korean oncaeid species

Five Oncaea species were recorded on the basis of specimens collected using three type nets from the South Sea and the East Sea of Korea. These included the clevei-group of one species (O. clevei) and the venusta-group of four species (O. media, O. mediterranea, O. scottodicarloi, O. waldemari). The former has a dorsoposterior projection on the second pedigerous somite, while the latter do not bear any dorsal projection on the somite. Also, their spatio-temporal distribution are discussed in relation to temperature-salinity.     

Measuring chlorophyll <Emphasis Type="Italic">a</Emphasis> concentrations in the Sea of Japan using probe and flow fluorimeters

The spatial variability of chlorophyll a concentrations was studied from the data of two near-shore expeditions and the cruise of the R/V Akademik M.A. Lavrent’ev in October–November 2010 over the northwestern part of the Sea of Japan. The sections across eddies showed a maximum of chlorophyll a at a depth of 40 m. According to the data from the cruise, the chlorophyll a concentration was maximum in the north of the sea and decreased to the south. In parallel, the procedures for chlorophyll a determination were compared for spectrophotometry with a fluorescence probe and a fluorescence flow system. The probe data of chlorophyll a fluorescence showed a high correlation with the chlorophyll a concentrations by spectrophotometry. On the contrary, data on chlorophyll a concentrations from spectrophotometry did not agree with those from the flow system. It was shown that a fluorimeter in the flow system recorded dissolved organic matter along with the chlorophyll a fluorescence.     

New polymorphic microsatellite markers derived from hemocyte cDNA library of Manila clam <Emphasis Type="Italic">Ruditapes philippinarum</Emphasis> challenged by the protozoan parasite <Emphasis Type="Italic">Perkinsus olseni</Emphasis>

Manila clam Ruditapes philippinarum is one of the most important benthic animals in the coastal north Pacific region, where clam populations have been mixed genetically through trade and aquaculture activities. Accordingly, identification of the genetically different clam populations has become one of the most important issues to manage interbreeding of the local and introduced clam populations. To identify genetically different populations of clam populations, we developed 11 expressed sequence tag (EST)-microsatellite loci (i.e., simple sequence repeat, SSR) from 1,128 clam hemocyte cDNA clones challenged by the protozoan parasite Perkinsus olseni. Genotype analysis using the markers developed in this study demonstrated that clams from a tidal flat on the west coast contained 6 to 19 alleles per locus, and a population from Jeju Island had 4 to 20 alleles per locus. The expected heterozygosity of the 2 clam populations ranged from 0.472 to 0.919 for clams from the west coast, and 0.494 to 0.919 for clams from Jeju Island, respectively. Among the 11 loci discovered in this study, 7 loci significantly deviated from the Hardy-Weinberg equilibrium after Bonferroni correction. The 5 loci developed in this study also successfully amplified the SSRs of R. variegatus, a clam species taxonomically very close to R. philippinarum, from Hong Kong and Jeju Island. We believe that the 11 novel polymorphic SSR developed in this study can be utilized successfully in Manila clam genetic diversity analysis, as well as in genetic discrimination of different clam populations.     

A new species of the genus <Emphasis Type="Italic">Ammonicera</Emphasis> (Prosobranchia,Omalogyridae) in a coralline algae community from Jeju Island,off the south coast of Korea

A species of the genus Ammonicera Vayssière, 1893 collected from coralline algae communities in Jeju Island, South Korea, is described as a new species, A. aurea, for science. Its morphological characters are described and illustrated by SEM micrographs. This new species can be clearly distinguished from other Ammonicera species from the Pacific Ocean by the presence of a spiral cord and about 25 slightly-elevated axial ribs, resulting in about 25 nodules at intersecting points of the cord and ribs on the last whorl of the teleoconch.     

Re-evaluation of Morphological Diagnostic Characteristics of <Emphasis Type="Italic">Hexapleomera</Emphasis> Dudich, 1931 (Crustacea: Tanaidacea), with Description of a New Species

An undescribed species of Tanaidacea was collected from Yokji Harbor in the southern coast of Korea. Hexapleomera yokjidona n. sp. can be distinguished from other species of the genus by the distinguishing features of a uropod with five articles, a pleopod basal article lacking inner seta, a mandible setal row with two setae, maxilliped coxa with two proximal setae, pereonites 1–3 together longer than wide, and pereopods 2–3 propodus with three ventral setae. To prove that H. yokjidona is a new species, detailed morphological characteristics of both genders are described and a comprehensive comparison among the species of the genus is tabulated. Additionally, diagnostic characteristics previously used to identify the species of Hexapleomera are reassessed and upgraded.     

Hybrid <Emphasis Type="Italic">N</Emphasis>-order Lagrangian interpolation Eulerian-Lagrangian method for salinity calculation

The Eulerian-Lagrangian method (ELM) has been used by many ocean models as the solution of the advection equation, but the numerical error caused by interpolation imposes restriction on its accuracy. In the present study, hybrid N-order Lagrangian interpolation ELM (LiELM) is put forward in which the N-order Lagrangian interpolation is used at first, then the lower order Lagrangian interpolation is applied in the points where the interpolation results are abnormally higher or lower. The calculation results of a step-shaped salinity advection model are analyzed, which show that higher order (N=3-8) LiELM can reduce the mean numerical error of salinity calculation, but the numerical oscillation error is still significant. Even number order LiELM makes larger numerical oscillation error than its adjacent odd number order LiELM. Hybrid N-order LiELM can remove numerical oscillation, and it significantly reduces the mean numerical error when N is even and the current is in fixed direction, while it makes less effect on mean numerical error when N is odd or the current direction changes periodically. Hybrid odd number order LiELM makes less mean numerical error than its adjacent even number order LiELM when the current is in the fixed direction, while the mean numerical error decreases as N increases when the current direction changes periodically, so odd number of N may be better for application. Among various types of Hybrid N-order LiELM, the scheme reducing N-order directly to 1st-order may be the optimal for synthetic selection of accuracy and computational efficiency.     

Behavioral patterns and <Emphasis Type="Italic">in-situ</Emphasis> target strength of the hairtail (<Emphasis Type="Italic">Trichiurus lepturus</Emphasis>) via coupling of scientific echosounder and acoustic camera data

The present study focuses on the influence of target strength (TS) changes in the swimming angle of the hairtail (Trichiurus lepturus). We measured in-situ TS at 38 and 120 kHz with luring lamps at a fishing ground for jigging boats near the coastal waters of Jeju-do in Korea. Swimming angle and size of hairtails were measured using an acoustic camera. Results showed that mean preanal length was estimated to be 13.5 cm (SD = 2.7 cm) and mean swimming tilt angle was estimated to be 43.9° (SD = 17.6°). The mean TS values were ?35.7 and ?41.2 dB at 38 and 120 kHz, respectively. The results will assist in understanding the influence of swimming angle on the TS of hairtails and, thus, improve the accuracy of biomass estimates.     

Phylogenetic relationship between symbionts of tubeworm <Emphasis Type="Italic">Lamellibrachia satsuma</Emphasis> and the sediment microbial community in Kagoshima Bay

Vestimentiferan tubeworms acquire their symbionts through horizontal transmission from the surrounding environment. In the present study, we constructed a 16S rRNA gene clone library to investigate the phylogenetic relationship between diverse microbes in the sediment and symbiotic bacteria in the trophosome of the tubeworm, Lamellibrachia satsuma, from Kagoshima Bay, Japan. Two symbiotic bacterial phylotypes belonging to the classes γ- and ε-Proteobacteria were found from this tubeworm trophosome. They were very closely related to the symbionts of several other marine invertebrates. The most predominant bacteria in the sediment were ε-Proteobacteria. A broad diversity of bacteria belonged to non-proteobacterial phyla such as Planctomycetes, Acidobacteria, and Chloroflexi was observed. The presence of sulfur oxidizers (i.e., ε-Proteobacteria and γ-Proteobacteria) and sulfur reducers (i.e., δ-Proteobacteria) may play a significant role in the sulfur cycle in these habitats and provide multiple sources of nutrition to the cold-seep communities. Closely related clones of ε-Proteobacteria symbiont in the species level and of γ-Proteobacteria symbiont in the genus level were found in the surrounding sediment. The similarity of symbiont clones of L. satsuma with other symbionts and free-living bacteria suggests the possibility of opportunistic symbiosis in ε-Proteobacteria and the co-evolution of γ-Proteobacteria having occurred after symbiosis with the tubeworms.     

Grazing Impact of the Copepod <Emphasis Type="Italic">Calanus sinicus</Emphasis> on Phytoplankton in the Northern East China Sea in Late Spring

We investigated the feeding habits of Calanus sinicus during its four developmental stages as copepodite 4 (CIV), copepodite 5 (CV), adult males and females in early June 2015 at 12 sampling stations along the southern coast of Korea to the northern East China Sea, to better understand the role of C. sinicus in controlling phytoplankton stocks. Ingestion rate, daily ration as body carbon, population ingestion rate, and grazing impact were estimated using the gut pigment method. The mean biomass of CVs was the greatest (13.5 mg C m^–3) and that of adult males was the lowest (0.7 mg C m^–3). The ingestion rate per C. sinicus individual tended to increase with developmental stage, with the highest rate in adult females (519 ng chl ind^–1 d^–1) and the lowest rate in CIVs (305 ng chl ind^–1 d^–1). A significant correlation was found between ingestion rate and temperature, but not salinity or chlorophyll-a concentration. The daily ration of C. sinicus as body carbon significantly decreased with increased body weight, with the highest value found in CIVs (66.4%) and the lowest value in adult males (30%). Despite the high ingestion rate of the adults, the mean grazing impact of C. sinicus on phytoplankton biomass, in terms of chlorophyll-a concentration, was the highest in CVs (2.6%), followed by CIVs and adult females, and was the lowest in adult males (0.1%). The higher grazing impact of copepodites than adults underscores the importance of evaluating copepodite stages in the feeding studies of marine food webs.     

Morphological differences between three groups of <Emphasis Type="Italic">Luciogobius guttatus</Emphasis> on the Korean Peninsula

Three ecological and geographical forms of Luciogobius guttatus from the western and eastern coasts of the Korean Peninsula as well as the coasts of, Jeju Island which is located to the south of the peninsula are described and compared based on morphological characteristics. The environments of these three coastal areas are different, and the morphometrics show a clear pattern of differentiation and reveal the discreteness of the western, eastern and Jeju groups. In addition, a discriminant analysis (DA), a principal component analysis (PCA) of morphometric characteristics, and a t-test for meristic characteristics all show that the three populations of L. guttatus differ from each other. Three divergent lineages of L. guttatus are described with the possibility of niche differentiation between the western, eastern and Jeju coastal habitats. The standard length of eastern populations was greater than that of western and Jeju populations, and those with morphometric characteristics had a longer body. In addition, eastern populations had a higher number of vertebrae. We speculate that the characteristics of eastern populations evolved through the difference in tide level and gravel density, whereas the difference between western and Jeju populations is due to geographical distance.