Benthic Macrophyte Distribution and Abundance in Estuarine Mangrove Lakes and Estuaries: Relationships to Environmental Variables

Annual mean salinity, light availability, and sediment depth to bedrock structured the submerged aquatic vegetation (SAV) communities in subtropical mangrove-lined estuaries. Three distinct SAV communities (i.e., Chara group, Halodule group, and Low SAV coverage group) were identified along the Everglades–Florida Bay ecotone and related to water quality using a discriminant function model that predicted the type of plant community at a given site from salinity, light availability, and sediment depth to bedrock. Mean salinity alone was able to correctly classify 78% of the sites and reliably separated the Chara group from the Halodule group. The addition of light availability and sediment depth to bedrock increased model accuracy to 90% and further distinguished the Chara group from the Halodule group. Light availability was uniquely valuable in separating the Chara group from the Low SAV coverage group. Regression analyses identified significant relationships between phosphorus concentration, phytoplankton abundance, and light availability and suggest that a decline in water transparency, associated with increasing salinity, may have also contributed to the historical decline of Chara communities in the region. This investigation applies relationships between environmental variables and SAV distribution and provides a case study into the application of these general principals to ecosystem management.     

Macrozooplankton Community Dynamics in Relation to Environmental Variables in Willapa Bay,Washington, USA

Willapa Bay is a large, economically and ecologically important estuary on the Washington coast, USA for which the zooplankton community has not previously been studied. Thus, in 2006 and 2007, six stations within Willapa Bay were sampled biweekly for macrozooplankton, chlorophyll, and various abiotic variables to elucidate the processes underlying community composition and dynamics. Non-metric multidimensional scaling identified water temperature and upwelling values as major factors defining two distinct temporal communities. High densities and a community dominated by oceanic species (Calanus pacificus, Centropages abdominalis) marked the winter season, while summer (or the upwelling season) was dominated by estuarine species (Palaemonidae, Clevelandia ios). Smaller scale changes in the community were characterized by variation in chlorophyll a concentration and salinity and were marked by the presence of other taxa (Neotrypaea californiensis, Mysidae). These results point to the importance of physical processes, including the import of marine organisms and retention of estuarine organisms, in the structuring of the macrozooplankton community in Willapa Bay.     

Mainstem and Backwater Fish Assemblages in the Tidal Caloosahatchee River: Implications for Freshwater Inflow Studies

Research strategies for investigating the freshwater-inflow requirements of estuarine fishes often integrate life-history information and correlative analyses of inflow and fish abundance. In tidal rivers, however, some fish have affinities for embayments, oxbows, and smaller tributaries, often referred to collectively as river “backwaters”. The objective of this study was to determine whether freshwater and estuarine fish assemblages differed between backwaters and the mainstem of the tidal Caloosahatchee River, a highly managed river system located in an urban setting in southwest Florida. Nonmetric multidimensional scaling of 21.3-m seine data revealed that fish assemblages did indeed differ between the backwater and mainstem habitats in each of three river sections. Univariate analyses identified species that differed in abundance between the habitats, which included ecologically and economically important fishes in the region. For example, striped mullet Mugil cephalus and pinfish Lagodon rhomboides were more abundant along the river's mainstem; common snook Centropomus undecimalis and bluegill Lepomis macrochirus were more abundant in the river's backwaters. For those species that were more abundant along the mainstem of the river or showed no difference, studies that measure changes in the distribution and abundance of these species with varying inflow along the mainstem of the river are justified. However, for species that were more abundant in backwater areas, geomorphological features should be considered in the design of studies that assess factors affecting fish use.     

Response of Lake Pontchartrain Fish Assemblages to Hurricanes Katrina and Rita

To assess possible impacts on Lake Pontchartrain fishes from the 2005 hurricanes, we compared trawl, beach seine, and gillnet collections taken before (2000–2003, 2005) and after (2006–2009) to determine if significant assemblage changes occurred. We also compared basic environmental variables to test for hurricane-related changes. Significant post-hurricane changes in fish assemblages occurred in trawl (analysis of similarity (ANOSIM), R?<?0.090, p?<?0.05) and beach seine (ANOSIM, R?<?0.120, p?<?0.05) collections across all seasons. Gillnet assemblages exhibited changes in only one season (ANOSIM, R?=?0.045, p?<?0.05). These consistently low global R values (all R?<?0.120) across all gears suggest only minor compositional changes in species. When peak abundance periods were compared for individual species, Gulf menhaden (Brevoortia patronus) declined in trawl collections after the hurricanes (Friedman's test, χ ²?=?6.00, p?=?0.014) but increased in gillnet collections (Friedman's test, χ ²?=?5.00, p?=?0.025). Hardhead catfish (Ariopsis felis) increased in trawl collections, but Gulf pipefish (Syngnathus scovelli), naked gobies (Gobiosoma bosc), and rough silverside (Membras martinica) all declined in beach seine samples and Atlantic croakers (Micropogonias undulatus), Spanish mackerel (Scomberomorus maculatus), and sand seatrout (Cynoscion arenarius) all declined in gillnet samples. In general, salinity increased and water clarity and dissolved oxygen decreased after the hurricanes. While the overall composition of Lake Pontchartrain fish assemblages remains stable, the significant decline of some species and changes in certain environmental variables are cause for concern. Future monitoring should determine if all elements of this estuary will recover from these impacts.     

Seasonal Diet Shifts and Overlap Between Two Sympatric Catfishes in an Estuarine Nursery

This study describes the seasonal feeding habits of different size classes of Cathorops spixii and Cathorops agassizii along an estuarine ecocline and the food overlap when different size classes occur together. These species were essentially zoobenthivorous, feeding mainly on Polychaeta Nereis sp., Copepoda Pseudodiaptomus acutus, Ostracoda Asterope sp., Gastropoda: Littorinidae, and Bivalvia Mytilus sp. and Anomalocardia brasiliana. However, during their life cycle and between different habitats and seasons, their trophic guild can change to zooplanktivore. The competition for resources was observed among C. spixii and C. agassizii, but was significantly reduced due to the seasonal diference in habitat use by different ontogenetic phases in the main channel of the estuary. The food niche separation was strongly influenced by environmental fluctuations, principally of salinity, resulting from rainfall and river inflow. High abundance of some preys, such as P. acutus (all estuary), Asterope sp. (upper and middle estuary), and Littorinidae (upper and lower estuary), could influence the significant diet overlap, principally during the rainy season, and call for more detailed studies of the benthic community structure. Moreover, dietary overlap was observed mainly between smaller sizes (intraspecific and/or interspecific) or between corresponding ontogenetic phases (interspecific), suggesting some differentiation in the diet in relation to the size class. Differences in prey type and size between the different ontogenetic phases of these ariids, principally among juveniles and adults, could be related to the size of the mouth, since adults are able to successfully capture larger preys or larger quantities of particular items.     

Spatiotemporal Models of an Estuarine Fish Species to Identify Patterns and Factors Impacting Their Distribution and Abundance

Understanding the distribution and abundance of organisms can be exceedingly difficult for pelagic fish species that live in estuarine environments. This is particularly so for fish that cannot be readily marked and released or otherwise tracked, such as the diminutive delta smelt, Hypomesus transpacificus, endemic to the San Francisco Estuary. The environmental factors that influence their distribution operate at multiple scales, from daily tidal cycles and local perceptual fields to seasonal and annual changes in dominant environmental gradients spanning the entire San Francisco Estuary. To quantify scale-specific patterns and factors shaping the spatiotemporal abundance dynamics of adult delta smelt, we fit a suite of models to an extensive, spatially resolved, catch survey time series from 13 annual cohorts. The best model included cohort-specific abundance indicators and daily mortality rates, a regional spatial adjustment, and haul-specific environmental conditions. The regional adjustment identified several density hot spots that were persistent across cohorts. While this model did include local environmental conditions, the gain in explained variation was relatively slight compared to that explained by the regional adjustment. Total abundance estimates were derived by multiplying habitat volume by catch density (design-based) and modeled density (model-based), with both showing severe declines in the population over the time period studied. The design-based approaches had lower uncertainty but potentially higher bias. We discuss the implications of our results for advancing the science and improving management of delta smelt, and future data collection needs.     

Multispecies Mortality Patterns of Commercial Bivalves in Relation to Estuarine Salinity Fluctuation

Fluctuations in salinity may cause huge economic losses in estuaries with exploited commercial bivalves owing to their effect on mortality of these species. However, the same decrease in salinity does not affect all species in the same way, so it is interesting to study the effect of salinity from a multispecies standpoint. In the management of exploited bivalve beds, it is important to know the tolerance thresholds of the species, not only in cases of extremely low salinities but also over prolonged periods when salinities are low but not extreme. An analysis of mortality episodes of commercial bivalves in the Ulla River estuary (Galicia, NW Spain) from 1977 to 2009 revealed two mortality patterns related to how greatly the different species were affected. A mathematical model was designed to estimate salinity in the estuary based on weather conditions and tidal amplitude. By applying this model, it was possible to deduce the intensity and duration of the salinity decrease in the days prior to each mortality episode with the goal of relating these factors to mortality patterns. The two parameters found to be sufficient to explain the mortality observed were the minimum salinity at high tide and the number of consecutive days below a specific salinity threshold.     

Modeling the Effects of Future Outflow on the Abiotic Habitat of an Imperiled Estuarine Fish

Future development and climate change pose potentially serious threats to estuarine fish populations around the world. We examined how habitat suitability for delta smelt (Hypomesus transpacificus), a state and federally protected species, might be affected by changes in outflow in the San Francisco Estuary due to future development and climate change. Forty years of sampling data collected during fall from 1967 to 2008 were examined to define abiotic habitat suitability for delta smelt as a function of salinity and water transparency, and to describe long-term trends in habitat conditions. The annual habitat index we developed, which incorporated both quantity and quality of habitat, decreased by 78% over the study period. Future habitat index values under seven different development and climate change scenarios, representing a range of drier and wetter possibilities, were predicted using a model which related estuarine outflow to the habitat index. The results suggested that each of the scenarios would generally lead to further declines in delta smelt habitat across all water year types. Recovery targets for delta smelt will be difficult to attain if the modeled habitat conditions are realized.     

Assessment of Fish Assemblages Before Dredging of the Shipping Channel Near the Mouth of the Savannah River in Coastal Georgia

Evaluating the effects of anthropogenic activities is dependent upon data collection prior to impact, though funds are rarely allocated to conduct an assessment before a critical need arises. The Savannah Harbor Expansion Project is one such activity that includes dredging of the Savannah River. It may potentially change physical conditions of the estuary thereby altering fish assemblages. The purpose of the present study was to characterize pre-impact fish assemblages along a salinity gradient near the mouth of the river and determine which abiotic factors most influence them. One site within the mouth of the Savannah River and two sites immediately outside the river mouth were sampled monthly for 2 years using both a beam trawl and seine net. Salinity, temperature, dissolved oxygen, and sediment grain size were assessed. All four factors had a significant effect on fish assemblages. A total of 3943 fishes representing ≥55 species formed three statistically distinct fish assemblages and at least three seasonal assemblages. Only 24 species (43.6 %) were collected by both gear types indicating the importance of using multiple gear types to assess fish assemblages. We conclude that the fish assemblages near the mouth of the Savannah River may be altered or may shift given the predicted increase in salinity and/or the possible changes in sediment composition from channel dredging. Understanding the abiotic factors that most influence spatial and seasonal fish distributions prior to dredging will be invaluable in predicting how organisms will be impacted by similar public projects elsewhere.     

Environmental Correlates of Growth and Stable Isotopes in Intertidal Species Along an Estuarine Fjord

Production and resource use by intertidal taxa were studied in the estuarine fjord of Puget Sound, Washington, USA. Along nearly 100 km, salinity is similar, and intertidal habitat and immersion time were kept consistent, thus allowing a focus on other environmental variables such as temperature and resource availability that could influence growth. Primary producers (ulvoid and fucoid macroalgae) and suspension feeders (oysters and barnacles) were transplanted on three beaches in each of three regions and assessed for individual-level growth, carbon and nitrogen ratios, and stable isotopes. In most transplants, δ¹³C and C/N showed no regional variation but δ¹⁵N was enriched up-estuary. Among environmental variables, chlorophyll a, total suspended solids, and particulate organic matter had small and/or inconsistent regional variation, but temperature was higher up-estuary. For the most intensively studied species (Pacific oyster, Crassostrea gigas) transplanted four times over 2 years, seasonal and regional variation in growth were best predicted by temperature rather than resource availability. Growth rates continued to increase into Totten Inlet, a shallow finger inlet at the head of Puget Sound. As indicators of environmental conditions, the growth and tissue chemistry of intertidal study taxa affirm that sources and amounts of resources show no strong gradients along this estuarine fjord, and they also support temperature as a key factor for performance, with species-specific responses. Higher temperatures may also have community-level impacts, given prior evidence linking beach temperatures to reduced intertidal diversity and biomass into Puget Sound.     

Temporal Variability of Dark Carbon Fixation and Bacterial Production and Their Relation with Environmental Factors in a Tropical Estuarine System

Dark carbon fixation (DCF) is considered an important energy source in aquatic environments, although it has been neglected for a long time. DCF is known to be relevant in ecosystems associated with redoxclines, shallow-water sulfide-rich habitats, deep-sea vents, cold seeps, and even in coastal waters associated with upwelling events. The aim of this study was to evaluate the relative importance of DCF in relation to heterotrophic bacterial production (BP), as well as how these rates affect each other, and how they are influenced by the environmental factors. This study was conducted monthly during 2 years in a tropical eutrophic bay (Guanabara Bay), where two stations were sampled and compared. DCF and BP were measured by ¹⁴C-bicarbonate and ³H-leucine incorporation, respectively, and incubations in the dark. Our results showed that DCF is not a quantitatively relevant process in this estuarine system, when compared to heterotrophic BP, and possibly occurred via anaplerotic reactions. Relatively higher DCF rates were associated with less oxygenated waters at the more polluted station and during the wet summer-spring, when the water column is more stratified. BP rates presented clear spatial patterns, according to pollution and depth gradients, with higher rates in more polluted areas, and also at surface waters. The hydrodynamics combined with other environmental conditions (precipitation, temperature, dissolved organic carbon, and nutrients) may control the distribution of DCF and BP over space and time. The allochthonous inputs of organic matter are more important than DCF-derived organic carbon to bacterioplankton in this polluted and eutrophic bay, where the heterotrophic metabolism prevails.     

长江川江段现代沉积物的重矿物组合特征

川江是长江上游物源的主要汇集河段,其重矿物组合特征对长江的形成与演化研究非常重要。通过对金沙江、川江主河段及各支流沉积物进行系统的样品采集和重矿物组合特征分析发现,川江段干流重矿物组合稳定,以赤褐铁矿-磁铁矿-钛铁矿-绿帘石-角闪石-辉石-绿泥石为主。川江段干流与支流在重矿物组合方面存在显著不同,各主要支流的重矿物组合也有明显差异。金沙江、川江段及川江段的主要支流的沉积物重矿物特征与其源区的表壳岩系显示出极好的一致性。通过比较发现,川江段干流重矿物组合主要受金沙江制约,尽管有众多的支流汇入,但并未改变干流的重矿物组合特征,说明宜宾以上的表壳岩系对长江上游的重矿物组合特征具有支配意义。     

Multivariate Analysis of Water Quality and Plankton Assemblages in an Urban Estuary

Raritan Bay, located between the states of New York and New Jersey, has a long history of cultural eutrophication and associated harmful algal blooms (HABs). Despite striking chemical and biological alterations occurring in Raritan Bay, publications in the early 1960s were the last to report consecutive measurements of both water quality parameters and plankton species composition in this system. The objectives of this study were to characterize water quality trends and plankton composition in a eutrophic estuary, compare current environmental conditions to those documented in Raritan Bay 50 years ago (i.e., at the same six sampling sites), and to further clarify the relationship among nutrients, secondary consumers, and algal bloom generation in this system using ordination techniques. This study (monthly data collected from April 2010–October 2012) indicates that Raritan Bay continues to exhibit numerous symptoms of eutrophication, including high algal biomass, high turbidity, violations of the dissolved oxygen standard to protect fish health, and blooms of potentially harmful phytoplankton species. Altered spatial and temporal patterns for nitrate and soluble reactive phosphorus (SRP) over the past 50 years may suggest new, changing, or expanding sources of nutrients. A total of 14 HAB species have been identified, including Heterosigma akashiwo, which formed a bloom in the upper Raritan Bay during summer 2012 in association with hypoxic conditions. Multivariate analyses indicate that abundance of this species is positively associated with high temperature, salinity, nitrate, and SRP and negatively associated with spring river discharge rates and total zooplankton abundance in Raritan Bay.     

Linking the Abundance of Estuarine Fish and Crustaceans in Nearshore Waters to Shoreline Hardening and Land Cover

Human alteration of land cover (e.g., urban and agricultural land use) and shoreline hardening (e.g., bulkheading and rip rap revetment) are intensifying due to increasing human populations and sea level rise. Fishes and crustaceans that are ecologically and economically valuable to coastal systems may be affected by these changes, but direct links between these stressors and faunal populations have been elusive at large spatial scales. We examined nearshore abundance patterns of 15 common taxa across gradients of urban and agricultural land cover as well as wetland and hardened shoreline in tributary subestuaries of the Chesapeake Bay and Delaware Coastal Bays. We used a comprehensive landscape-scale study design that included 587 sites in 39 subestuaries. Our analyses indicate shoreline hardening has predominantly negative effects on estuarine fauna in water directly adjacent to the hardened shoreline and at the larger system-scale as cumulative hardened shoreline increased in the subestuary. In contrast, abundances of 12 of 15 species increased with the proportion of shoreline comprised of wetlands. Abundances of several species were also significantly related to watershed cropland cover, submerged aquatic vegetation, and total nitrogen, suggesting land-use-mediated effects on prey and refuge habitat. Specifically, abundances of four bottom-oriented species were negatively related to cropland cover, which is correlated with elevated nitrogen and reduced submerged and wetland vegetation in the receiving subestuary. These empirical relationships raise important considerations for conservation and management strategies in coastal environments.     

Flocculation Potential of Estuarine Particles: The Importance of Environmental Factors and of the Spatial and Seasonal Variability of Suspended Particulate Matter

Estuarine systems are complex environments where seasonal and spatial variations occur in concentrations of suspended particulate matter, in primary constituents, and in organic matter content. This study investigated in the laboratory the flocculation potential of estuarine-suspended particulate matter throughout the year in order to better identify the controlling factors and their hierarchy. Kinetic experiments were performed in the lab with a “video in lab” device, based on a jar test technique, using suspended sediments sampled every 2 months over a 14-month period at three stations in the Seine estuary (France). These sampling stations are representative of (1) the upper estuary, dominated by freshwater, and (2) the middle estuary, characterized by a strong salinity gradient and the presence of an estuarine turbidity maximum. Experiments were performed at a constant low turbulent shear stress characteristic of slack water periods (i.e., a Kolmogorov microscale >1,000 μm). Flocculation processes were estimated using three parameters: flocculation efficiency, flocculation speed, and flocculation time. Results showed that the flocculation that occurred at the three stations was mainly influenced by the concentration of the suspended particulate matter: maximum floc size was observed for concentrations above 0.1 g l⁻¹ while no flocculation was observed for concentrations below 0.004 g l⁻¹. Diatom blooms strongly enhanced flocculation speed and, to a lesser extent, flocculation efficiency. During this period, the maximum flocculation speed of 6 μm min⁻¹ corresponded to a flocculation time of less than 20 min. Salinity did not appear to automatically enhance flocculation, which depended on the constituents of suspended sediments and on the content and concentration of organic matter. Examination of the variability of 2D fractal dimension during flocculation experiments revealed restructuring of flocs during aggregation. This was observed as a rapid decrease in the floc fractal dimension from 2 to 1.4 during the first minutes of the flocculation stage, followed by a slight increase up to 1.8. Deflocculation experiments enabled determination of the influence of turbulent structures on flocculation processes and confirmed that turbulent intensity is one of the main determining factors of maximum floc size.     

Spatial Distribution and Long-term Movement Patterns of Cownose Rays Rhinoptera bonasus Within an Estuarine River

Passive acoustic telemetry was used to monitor the movements of cownose rays (Rhinoptera bonasus) within the Caloosahatchee River estuary in Southwest Florida. Twelve rays were tracked within the river between January 2004 and May 2005 for periods up to 234 days. Linear home range was calculated for all individuals and ranged between 0 and 18.4 km (daily) and 1 and 22.3 km (overall). Ray position within the river was compared to changing water quality parameters throughout the study. Although home range size did not increase with increasing salinity, individuals did occur farther upriver with decreasing flow rates and increasing salinity. There were no differences detected between day and night distribution patterns. Movement and presence patterns demonstrated significant use of the estuarine river over all months, indicating that cownose rays in southwest Florida may not undertake long seasonal migrations as established for other parts of their range.