Fresh Water Inflow and Oyster Productivity in Apalachicola Bay,FL (USA)

Apalachicola Bay lies at the mouth of the Apalachicola River, where seasonally variable freshwater inflows and shifting winds have long been thought to contribute to the support of an unusually productive and commercially important oyster fishery. Links between the river and productivity have been shown to lie in salinity-induced reductions in oyster predators and oyster disease as well as organic supplements from an extensive floodplain. Several studies have also indicated that nitrogen (N) and phosphorous (P) carried by the river are important in fertilization of bay primary production. While there is concern that upstream water withdrawals may impact the fishery, the importance of riverine N to oyster diets remains unclear. We measured N and carbon (C) stable isotopes (δ¹⁵N, δ¹³C) in macroalgae, surface-water nitrate, and surface sediments, which showed a gradient from enriched riverine δ¹⁵N values to more depleted values in the Gulf of Mexico. In contrast, δ¹³C of particulate matter is depleted in the river and enriched offshore. Oyster stable isotope values throughout Apalachicola Bay are more complex, but are dominated by freshwater inputs and reflect the variability and hydrodynamics of the riverine inflows.     

Spectral Irradiance, Phytoplankton Community Composition and Primary Productivity in a Salt Marsh Estuary, North Inlet, South Carolina, USA

We investigated spatial and temporal changes in spectral irradiance, phytoplankton community composition, and primary productivity in North Inlet Estuary, South Carolina, USA. High concentrations of colored dissolved organic matter (CDOM) were responsible for up to 84 % of the attenuation of photosynthetically available radiation (PAR). Green-yellow wavelengths were the predominant colors of light available at the two sampling sites: Clam Bank Creek and Oyster Landing. Vertical attenuation coefficients of PAR were 0.7–2.1 m^?1 with corresponding euphotic zone depths of 1.5–6.7 m. Phytoplankton biomass (as chlorophyll a [chl a]) varied seasonally with a summer maximum of 16 μg chl a l^?1 and a winter minimum of 1.4 μg chl a l^?1. The phytoplankton community consisted mainly of diatoms, prasinophytes, cryptophytes and haptophytes, with diatoms and prasinophytes accounting for up to 67 % of total chl a. Changes in phytoplankton community composition showed strongest correlations with temperature. Light-saturated chl a-specific rates of photosynthesis and daily primary productivity varied with season and ranged from 1.6 to 14 mg C (mg chl a) ^?1?h^?1 (32–803 mg C m^?3?day^?1). Calculated daily rates added up to an annual carbon fixation rate of 84 g C m^?3?year^?1. Overall, changes in phytoplankton community composition and primary productivity in North Inlet showed a strong dependence on temperature, with PAR and spectral irradiance playing a relatively minor role due to short residence times, strong tidal forcing and vertical mixing.     

Climatic Influences on Autochthonous and Allochthonous Phytoplankton Blooms in a Subtropical Estuary, St. Lucie Estuary, Florida, USA

The St. Lucie Estuary, located on the southeast coast of Florida, provides an example of a subtropical ecosystem where seasonal changes in temperature are modest, but summer storms alter rainfall regimes and external inputs to the estuary from the watershed and Atlantic Ocean. The focus of this study was the response of the phytoplankton community to spatial and temporal shifts in salinity, nutrient concentration, watershed discharges, and water residence times, within the context of temporal patterns in rainfall. From a temporal perspective, both drought and flood conditions negatively impacted phytoplankton biomass potential. Prolonged drought periods were associated with reduced nutrient loads and phytoplankton inputs from the watershed and increased influence of water exchange with the Atlantic Ocean, all of which restrict biomass potential. Conversely, under flood conditions, nutrient loads were elevated, but high freshwater flushing rates in the estuary diminished water residence times and increase salinity variation, thereby restricting the buildup of phytoplankton biomass. An exception to the latter pattern was a large incursion of a cyanobacteria bloom from Lake Okeechobee via the St. Lucie Canal observed in the summer of 2005. From a spatial perspective, regional differences in water residence times, sources of watershed inputs, and the proximity to the Atlantic Ocean influenced the composition and biomass of the phytoplankton community. Long water residence times in the North Fork region of the St. Lucie Estuary provided an environment conducive to the development of blooms of autochthonous origin. Conversely, shorter residence times in the mid-estuary limit autochthonous increases in biomass, but allochthonous sources of biomass can result in bloom concentrations of phytoplankton.     

Landward Propagation of Saline Waters Following Closure of a Bar-Built Estuary: Russian River (California,USA)

We investigate the evolution of the salt field in a bar-built estuary after the tidal inlet is closed by sediment, isolating the estuary from the ocean. We show that seawater trapped by inlet closure in the Russian River Estuary, CA, undergoes a two-stage landward intrusion process that leads to widespread salt stratification throughout the estuary. This salinity intrusion extends to distances of several kilometers from the beach—into the “inner estuary” that is separated from the “outer estuary” by shallow sills and typically devoid of saline waters during tidal conditions when the mouth is open. We describe landward movement of saline waters during six closure events in 2009 and 2010, based on repeat boat-based conductivity-temperature-depth (CTD) surveys and bottom-mounted acoustic Doppler current profilers (ADCPs). While sills block the initial landward motion of dense saline waters due to gravitational adjustment (first stage of intrusion), these same sills facilitate a wind-induced, one-direction valve mechanism through which saline waters are pumped into the inner estuary. Saline waters that crest the shallow sill can drain into deeper pools in the inner estuary as a pulsed gravity current (second stage of intrusion). We use empirical orthogonal function (EOF) analysis to identify an internal seiche in the outer estuary that results in uplift of pycnocline waters during the night at the boundary to the inner estuary. EOF analysis of inner estuary currents and a horizontal Richardson number are used to suggest that nocturnal gravity current events in the inner estuary (beyond the blocking sill) occur as pulses initiated by the internal seiche in the outer estuary.     

Spectral Irradiance and Phytoplankton Community Composition in a Blackwater-Dominated Estuary,Winyah Bay,South Carolina,USA

We investigated spatial and temporal relationships between spectral irradiance and phytoplankton community composition in the blackwater-influenced estuary Winyah Bay, South Carolina. Upstream, high concentrations of chromophoric dissolved organic matter (CDOM) absorbed blue wavelengths, resulting in a predominantly red light field. Green light prevailed downstream near the lower-CDOM coastal ocean, and phytoplankton community composition was distinct from upstream and mid-estuarine communities. Diatoms were abundant throughout the estuary in January, August, and October, cryptophytes dominated in July, and chlorophytes were abundant in December 2006. Only diatoms and chlorophytes showed significant covariation with the spectral attenuation coefficient (k(λ)): Chlorophytes showed positive relationships with k(442) (blue light) while diatoms were negatively correlated with k(442) and k(490) (violet to blue). Phytoplankton community composition in Winyah Bay appears to be driven by strong horizontal flow rather than gradients in spectral irradiance, but results indicate that water color is likely to play a greater role in blackwater-influenced estuaries with longer residence times.     

Hydrologic Variability and Its Control of Phytoplankton Community Structure and Function in Two Shallow,Coastal, Lagoonal Ecosystems: The Neuse and New River Estuaries,North Carolina,USA

Hydrologic conditions, especially changes in freshwater input, play an important, and at times dominant, role in determining the structure and function of phytoplankton communities and resultant water quality of estuaries. This is particularly true for microtidal, shallow water, lagoonal estuaries, where water flushing and residence times show large variations in response to changes in freshwater inputs. In coastal North Carolina, there has been an increase in frequency and intensity of extreme climatic (hydrologic) events over the past 15 years, including eight hurricanes, six tropical storms, and several record droughts; these events are forecast to continue in the foreseeable future. Each of the past storms exhibited unique hydrologic and nutrient loading scenarios for two representative and proximate coastal plain lagoonal estuaries, the Neuse and New River estuaries. In this synthesis, we used a 13-year (1998–2011) data set from the Neuse River Estuary, and more recent 4-year (2007–2011) data set from the nearby New River Estuary to examine the effects of these hydrologic events on phytoplankton community biomass and composition. We focused on the ability of specific taxonomic groups to optimize growth under hydrologically variable conditions, including seasonal wet/dry periods, episodic storms, and droughts. Changes in phytoplankton community composition and biomass were strongly modulated by the amounts, duration, and seasonality of freshwater discharge. In both estuaries, phytoplankton total and specific taxonomic group biomass exhibited a distinctive unimodal response to varying flushing rates resulting from both event-scale (i.e., major storms, hurricanes) and more chronic seasonal changes in freshwater input. However, unlike the net negative growth seen at long flushing times for nano-/microphytoplankton, the pigments specific to picophytoplankton (zeaxanthin) still showed positive net growth due to their competitive advantage under nutrient-limited conditions. Along with considerations of seasonality (temperature regimes), these relationships can be used to predict relative changes in phytoplankton community composition in response to hydrologic events and changes therein. Freshwater inputs and droughts, while not manageable in the short term, must be incorporated in water quality management strategies for these and other estuarine and coastal ecosystems faced with increasing frequencies and intensities of tropical cyclones, flooding, and droughts.     

Patterns of Phytoplankton Variability in the Tagus Estuary (Portugal)

Data were collected in the Tagus estuary from 1999–2007 on a monthly basis and combined with published results and for several previous years between 1980 and 1995, so that a comprehensive analysis could be performed over a non-continuous 27-year period. Sampling conditions and methods were similar for all datasets. Extreme wet and dry years were observed. River flow was strongly linked to phytoplankton abundance, with the highest biomass attained in dry years. The observed range of annual median Chl a was 1.8–7.6 µg L^?1 and the overall median was 3.5 µg L^?1. Dissolved inorganic nitrogen (DIN) and silicate showed a clear seasonal pattern, with a maximum in winter?spring, indicating a freshwater origin. Although wastewater treatment started in 1990, no difference was detected from 1980 to the present in terms of DIN and phosphorus. The recorded seasonal pattern for biomass with highest values in late spring–summer period is comparable to other temperate tidally influenced ecosystems. In spite of interannual differences in terms of Chl a concentration or the time of the maximum Chl a occurrence, a repeatable pattern could be identified. The mean growth development time for phytoplankton was 163 days (June 12) ranging 129–206 days (May 9–July 26) during the sampling period. No obvious changes in phytoplankton community structure were observed over time: diatoms were always the dominant group, and cryptophytes were relatively abundant throughout autumn–winter. The dominant species have remained essentially the same since 1969. River inflow, light availability, and temperature were the major factors shaping phytoplankton variability patterns. The strong influence of tidal mixing on the estuarine waters appears to lower the risk of potential eutrophication in the Tagus estuary. The lack of change in nutrients and phytoplankton biomass and composition observed in this study is an important contribution towards the assessment of natural variability versus responses to man-induced inputs in this severely anthropogenically disturbed estuary.     

The Role of Ocean Tides on Groundwater-Surface Water Exchange in a Mangrove-Dominated Estuary: Shark River Slough,Florida Coastal Everglades,USA

Low-relief environments like the Florida Coastal Everglades (FCE) have complicated hydrologic systems where surface water and groundwater processes are intimately linked yet hard to separate. Fluid exchange within these low-hydraulic-gradient systems can occur across broad spatial and temporal scales, with variable contributions to material transport and transformation. Identifying and assessing the scales at which these processes operate is essential for accurate evaluations of how these systems contribute to global biogeochemical cycles. The distribution of ²²²Rn and ^223,224,226Ra have complex spatial patterns along the Shark River Slough estuary (SRSE), Everglades, FL. High-resolution time-series measurements of ²²²Rn activity, salinity, and water level were used to quantify processes affecting radon fluxes out of the mangrove forest over a tidal cycle. Based on field data, tidal pumping through an extensive network of crab burrows in the lower FCE provides the best explanation for the high radon and fluid fluxes. Burrows are irrigated during rising tides when radon and other dissolved constituents are released from the mangrove soil. Flushing efficiency of the burrows—defined as the tidal volume divided by the volume of burrows—estimated for the creek drainage area vary seasonally from 25 (wet season) to 100 % (dry season) in this study. The tidal pumping of the mangrove forest soil acts as a significant vector for exchange between the forest and the estuary. Processes that enhance exchange of O₂ and other materials across the sediment-water interface could have a profound impact on the environmental response to larger scale processes such as sea level rise and climate change. Compounding the material budgets of the SRSE are additional inputs from groundwater from the Biscayne Aquifer, which were identified using radium isotopes. Quantification of the deep groundwater component is not obtainable, but isotopic data suggest a more prevalent signal in the dry season. These findings highlight the important role that both tidal- and seasonal-scale forcings play on groundwater movement in low-gradient hydrologic systems.     

Phytoplankton Productivity and Photophysiology in the Surf Zone of Sandy Beaches in North Carolina, USA

Measurements of primary production in surf-zone habitats are relatively rare and often utilize simulation approaches, owing to the physical challenges of working in surf. The study reported here examined primary production in situ at two open ocean sandy beaches in southeastern North Carolina during relatively calm summer conditions. In situ bottle incubations using ¹⁴C uptake methods were complemented by simultaneous measures of phytoplankton photo-physiology assessed by Fast Repetition Rate Fluorometry (FRRF) in flow-through mode at the two sites across a spring-neap tidal cycle in July, 2010. The surf-zone phytoplankton was dominated by small centric and pennate diatoms as well as cyanobacteria and chlorophytes with biomass concentrations of 3.63?C9.23?mg chl a m^?3. Primary productivity was relatively high, ranging from 31.5?C88.0?mg?C?m^?3?h^?1 by ¹⁴C. Biomass-specific productivity averaged ??9.4?mg C (mg chl a)^?1?h^?1 by ¹⁴C, indicating healthy phytoplankton populations. Measurements of the functional absorption cross section of photosystem II, ??_PSII, via FRRF were 327?C380, comparable to values reported by other investigators of open ocean phytoplankton. Averaged values of the maximum effective quantum yield, F _v/F _m, corresponded to proportions of photochemically competent PSII reaction centers of 62.6?% to 72?%, indicating that the phytoplankton were nutrient-replete. These data suggest that the surf zone, although a spatially confined habitat, is a productive one that plays a significant role in coastal ocean ecology. Further investigation is needed to better understand primary productivity of phytoplankton in the surf zone and the effect of the dynamic environment on their physiological responses.     

Long-term Dynamics of Phytoplankton in the Rhode River,Maryland (USA)

We analyzed interannual variability in a long-term record of chlorophyll concentration and phytoplankton species composition in the Rhode River, Maryland (USA). Over the approximately 30-year record, there was no long-term monotonic trend in phytoplankton chlorophyll concentration, though temporary directional trends related to precipitation patterns sometimes persisted for a decade before reversing. From counts on preserved samples, we estimated the dominance by different pigment-bearing groups and size classes. Diatoms, dinoflagellates, and cryptophytes comprised about 80–97% of the annual averaged class-specific biovolume. Cryptophytes dominated the first 2 years in the data set but displayed a long-term decline, after which diatoms dominated in all but four consecutive years in which there were large dinoflagellate blooms. There was a long-term increase in cells with equivalent spherical diameters from 4 to 10 μm, accompanied by declines in the proportion of cells in the 2- to 4- and 10- to 20-μm size classes. The main cause of these changes in size classes was a long-term increase in Chroomonas sp. and Apedinella radians and long-term decline in Microcystis sp. and an unidentified cryptophyte, respectively. These taxa were cosmopolitan in their seasonal and spatial distributions, and hence the long-term changes in taxa did not conform well with conceptual models based on succession of “life-forms.” The segregation of diatoms and dinoflagellates expected on the basis of “life-forms” applied to seasonal and spatial patterns. Characterizing the phytoplankton community in terms of diversity, size, and class-specific biovolume gave results that were consistent with one another and added insight to the broad-scale changes in chlorophyll concentration. Subtle changes in the size distribution of cryptophytes were not apparent from biovolume measures and would not have been apparent without microscopy. Though causes of such shifts may be difficult to identify, identifying the causes and predicting potential consequences cannot even be attempted without awareness of the phenomena.     

Environmental Forcing of Phytoplankton in a Mediterranean Estuary (Guadiana Estuary,South-western Iberia): A Decadal Study of Anthropogenic and Climatic Influences

Phytoplankton seasonal and interannual variability in the Guadiana upper estuary was analyzed during 1996–2005, a period that encompassed a climatic controlled reduction in river flow that was superimposed on the construction of a dam. Phytoplankton seasonal patterns revealed an alternation between a persistent light limitation and episodic nutrient limitation. Phytoplankton succession, with early spring diatom blooms and summer–early fall cyanobacterial blooms, was apparently driven by changes in nutrients, water temperature, and turbulence, clearly demonstrating the role of river flow and climate variability. Light intensity in the mixed layer was a prevalent driver of phytoplankton interannual variability, and the increased turbidity caused by the Alqueva dam construction was linked to pronounced decreases in chlorophyll a concentration, particularly at the start and end of the phytoplankton growing period. Decreases in annual maximum and average abundances of diatoms, green algae, and cyanobacteria were also detected. Furthermore, chlorophyll a decreases after dam filling and a decrease in turbidity may point to a shift from light limitation towards a more nutrient-limited mode in the near future.     

Factors Controlling Phytoplankton Biomass in a Subtropical Coastal Lagoon: Relative Scales of Influence

Patterns in phytoplankton biomass are essential to understanding estuarine ecosystem structure and function and are the net result of various gain and loss processes. In this study, patterns in phytoplankton biomass were explored in relation to a suite of potentially regulating factors in a well-flushed, subtropical lagoon, the Matanzas River Estuary (MRE) in northeast Florida. We examined temporal variability in water temperature, light availability, nutrient concentrations, phytoplankton productivity, and phytoplankton standing stock over 8 years (2003–2010) and explored relationships among variables through correlation analysis. Laboratory experiments in the spring and summer of 2009 quantified phytoplankton growth rates, nutrient limitation potential, and zooplankton grazing rates. The potential influence of oyster grazing was also examined by scaling up population metrics and filtration rate estimates. Results indicated that phytoplankton biomass in the study area was relatively low mainly due to a combination of low temperature and light availability in the winter and consistent tidal water exchange and bivalve grazing throughout the year. Relatively low levels of phytoplankton standing stock and small inter-annual variability within the MRE reflect a balance between gain and loss processes which provide a degree of resilience of the system to natural and anthropogenic influences.     

Decadal Changes in Water Quality and Net Productivity of a Shallow Danish Estuary Following Significant Nutrient Reductions

We utilized an extensive data set (1977–2013) from a water quality monitoring program to investigate the recovery of a Danish estuary following large reductions in total phosphorus (TP) and total nitrogen (TN) loading. Monthly rates of net transport and biogeochemical transformation of dissolved inorganic nitrogen (DIN) and phosphorus (DIP) were computed in two basins of the estuary using a box model approach, and oxygen-based rates of net ecosystem production (NEP) were determined. Since 1990, nutrient loading was reduced by 58 % for nitrogen and 80 % for phosphorus, causing significant decreases in DIN (60 %) and DIP (85 %) concentrations. Reductions in nutrient loadings and concentrations reduced annual chlorophyll levels by 50 % in the inner estuary and improved Secchi depth by approximately 1 m during the same period, particularly in the summer period. In the outer, deeper region of the estuary trends in water quality was less evident. Improvements in the inner estuary were strongly coupled to declines in DIN. Thresholds of DIN and DIP concentrations limiting phytoplankton growth indicated that both regions of the estuary were nitrogen limited. NEP rates indicated the development of more net autotrophic conditions over time that were likely associated with higher benthic primary production stimulated by improved light conditions. Box model computations revealed a modest reduction in summer net production of DIP over time, despite the persistence of elevated fluxes for several years after external loads were reduced. Since the mid-1990s, nutrient loading and transformation were stable while nutrient concentrations continued to decline and water quality improved in the inner estuary. The oligotrophication trajectory involved an initial fast transformation and modest retention of nutrients followed by a gradual decline in the rate of improvement towards a new stable condition.     

Natural Environmental Changes versus Human Impact in a Florida Estuary (Rookery Bay, USA)

Assessing the impact of climate change and anthropogenic activity on Florida coastal areas requires a thorough understanding of natural climate variability. The available instrumental record, however, is too short and too limited to capture the full range of natural variability. In order to provide additional data on the natural state of the climate system and to evaluate the influence of human impact, we reconstructed climatic and environmental changes of the past 300 years. Pre- (before 1900 ad) and post-human impact conditions were compared in Rookery Bay, a subtropical, southern Florida estuary and its bordering wetland system. Biomarkers from terrestrial and aquatic environments were used to reconstruct temperature, runoff, and aquatic productivity. Pre-anthropogenic conditions before 1750 ad indicate a relatively large contribution of mangrove-derived organic matter, locally decreasing at the end of this period. After 1750 ad follows a relatively stable period in which biomarker concentrations indicate relatively low levels of runoff and aquatic production. Enhanced anthropogenic activities, such as land clearance and hydrological alterations, end this period of stability by altering the hydrological conditions. This leads to a more dynamic system which is more sensitive to disturbances of vegetation and drainage, as evidenced by peak terrestrial biomarker fluxes during the twentieth century. These episodes of enhanced runoff resulted in eutrophication and algal blooms in Rookery Bay. Natural climate phenomena, such as a positive AMO phase and hurricane activity, might have added to ongoing processes during the twentieth century.     

In Situ Response of Phytoplankton to Nutrient Additions in a Tropical Coastal Lagoon, (La Mancha,Veracruz, Mexico)

An experimental in situ microcosm study was conducted in the tropical lagoon La Mancha (Gulf of Mexico) to determine whether or not nutrient limitation occurs and to examine the direct effect of an inorganic nutrient pulse on the phytoplankton community structure. The phytoplankton community response to the addition of four treatments with different combinations of nitrogen (N), phosphorus (P), and silica (Si) (+N-NH₄ ⁺, +P-PO₄ ^?, +Si-SO₃, and N:P16) showed that phytoplankton was N-limited as indicated by an increase in phytoplankton biomass (i.e., chlorophyll a) (range, 8–34 mg m^?3) during the dry season in two consecutive years (2006 and 2007). Picophytoplankton abundance significantly increased in the +N treatment (145.46 10³ cells L^?1), while microphytoplankton reached a maximum abundance (68.38 10³ cells L^?1) in the N:P16 treatment. Phytoplankton composition changed from a community initially dominated by dinoflagellates (e.g., Prorocentrum spp.) to another dominated by diatoms (Thalassiosira and Nitzschia longissima) in the N:P16 treatment. The +N treatment significantly increased Synechococcus sp. growth rates (1.3 divisions per day) (picocyanobacteria). Biomarker pigments measured in the experimental microcosms confirmed observed changes in phytoplankton groups. Our results reveal that La Mancha lagoon is a N-limited coastal system during the dry season and provides evidence of the temporal species successional patterns and mechanisms regulating the phytoplankton community response to nutrient enrichment pulses in this already eutrophic coastal lagoon.     

Influence of Wind-Driven Inundation and Coastal Geomorphology on Sedimentation in Two Microtidal Marshes, Pamlico River Estuary, NC

Marsh sediment accumulation is predominately a combination of in situ organic accumulation and mineral sediment input during inundation. Within the Pamlico River Estuary (PRE), marsh inundation is dependent upon event (e.g., storms) and seasonal wind patterns due to minimal astronomical tides (<10 cm). A better understanding of the processes controlling sediment deposition and, ultimately, marsh accretion is needed to forecast marsh sustainability with changing land usage, climate, and sea level rise. This study examines marsh topography, inundation depth, duration of inundation, and wind velocity to identify relationships between short-term deposition (tile-based) and long-term accumulation (²¹⁰Pb and ¹³⁷Cs) recorded within and adjacent to the PRE. The results of this study indicate (1) similar sedimentation patterns between the interior marsh and shore-side marsh at different sites regardless of elevation, (2) increased sedimentation (one to two orders of magnitude, 0.04–4.54 g m^?2 day^?1) within the interior marsh when the water levels exceeded the adjacent topography (e.g., storm berm), and (3) that short-term sea level changes can have direct effects on sediment delivery to interior marshes in wind-driven estuarine systems.