Dynamics of hypersaline coastal waters in the Great Barrier Reef

The coastal waters of the Great Barrier Reef (GBR) are hypersaline (salinity ∼37) during the dry season as a result of evaporation greatly exceeding rainfall, of shallow waters, and of the presence of numerous bays along the coast preventing rapid flushing. These hypersaline waters are not flushed out by salinity-driven baroclinic currents because these waters are vertically well-mixed. Instead these waters are transported by a longshore residual current and thus form a coastal boundary layer of hypersaline waters. As a result the hypersalinity distribution is 2-D with both cross-shelf and longshore gradients of salinity. The cross-shelf gradients are largely controlled by turbulent diffusion, while the longshore gradients are controlled by the residual currents that transport hypersaline waters longshore south ward in the central and southern regions of the GBR. Because every bay supplies hypersaline waters, the width of the coastal hypersaline layer increases southwards. Steady state is reached in about 100 days, which is the typical duration of the dry season. The dynamics of the GBR hypersaline coastal boundary layer thus differ from the classical inverse hypersaline systems, e.g. in Saloum River Estuary, Laguna San Ignacio, Mission Bay, Tomales Bay, San Diego Bay, Hervey Bay, Shark Bay, Coorong Coast Lagoon, Spencer Gulf, Gulf of California and many others where the salinity gradient is mainly 1-D with a dominant along-channel salinity gradient.     

Socio-economic aspects of artificial reefs: Considerations for the Great Barrier Reef Marine Park

Artificial reefs are used to enhance recreational fishing and diving opportunities in the marine environment. Until recently, demand for artificial reefs in the Great Barrier Reef Marine Park (GBRMP) has been low due to the high value placed on the natural ecosystem of the Great Barrier Reef (GBR) and the abundance of fishing and diving opportunities it provides. In the GBRMP, where there are multiple stakeholder groups with diverse and often conflicting values and opinions, the deployment of artificial reefs will be a complex and controversial social issue. We review the available socio-economic literature regarding the deployment, use, and management of artificial reefs, and aim to identify and understand potential socio-economic issues and information gaps surrounding deployment of artificial reefs in the GBRMP. We also outline a strategy to guide decision-making and maximize the socio-economic value of artificial reefs should they be deployed in the GBRMP.     

Ongoing effects of no-take marine reserves on commercially exploited coral trout populations on the Great Barrier Reef

Networks of no-take marine reserves (NTMRs) are widely used for managing marine resources. Because they restrict fishing, managers need to monitor reserves to reassure stakeholders that they are achieving the intended results. In 2004, the Great Barrier Reef (GBR) Marine Park was rezoned and the area of NTMRs was greatly increased. Using manta tow we assessed the effectiveness of the new NTMRs in conserving coral trout (Plectropomus and Variola spp.), the principle targets of the GBR reef line fishery. Over a six year period, we sampled regional groups of matched pairs of similar reefs, ones closed to fishing under the rezoning and ones that remained open. Coral trout populations were significantly higher in NTMRs. While coral trout populations declined on reefs open to fishing, stocks were maintained in NTMRs, highlighting the ongoing benefits of marine reserves.     

Seismic and stratigraphic evidence for reef expansion and onset of aridity on the Northwest Shelf of Australia during the Pleistocene

Modern reef (the Great Barrier Reef and Ryukyu Reef) distribution in the Indo-Pacific region is strongly controlled by warm currents (East Australian and Kuroshio Currents) that radiate from the Indo-Pacific Warm Pool. The modern distribution of reefs (south of 15°S) on the Western Australian shelf is related to the presence of the warm Leeuwin Current. However, the age of the reefs south of 15°S, and hence their temporal relationship to the Leeuwin Current, has been largely unknown. Seismic and subsurface stratigraphic data show that reef growth and expansion on the Northwest Shelf of Australia began in the Middle Pleistocene (∼0.5 Ma). The oldest ooids in the region are approximately synchronous with reef growth. We suggest a two stage process for the spread of reefs to higher latitudes on the Western Australian coast; first an increase in Leeuwin Current activity at approximately 1 Ma brought warm waters and a tropical biota to the region; and second, increased aridity after ∼0.6 Ma led to a decline in clastic input and increased alkalinity, triggering ooid formation and reef expansion to higher latitudes associated with the switch to higher amplitude glacio-eustatic cycles at the end of the Middle Pleistocene Transition. The timing and mechanisms for reef expansion south along the Western Australian coast has implications for the origin of the Eastern Australian Middle Pleistocene Great Barrier Reef, the New Caledonia Barrier Reef and Japanese Ryukyu Reef systems.     

Population biology and recruitment of a vulnerable sea cucumber,Stichopus herrmanni,on a protected reef

Populations of tropical sea cucumbers, harvested for bêche‐de‐mer, are in a perilous state of conservation, yet there remains a paucity of information on the biology of many harvested species. We examined the population biology of the commercially important curryfish, Stichopus herrmanni, across 2 years on Heron Reef, a protected zone in the Great Barrier Reef (GBR) Marine Park. Stichopus herrmanni, a species recently listed as vulnerable to extinction, is a major target species for the fishery operating in the GBR. The size class distribution and density of S. herrmanni were documented for six sites across Heron Reef. There was distinct spatial variation in the size and density of S. herrmanni across sites, with no significant difference between the 2 years. The smallest individuals found were 10 cm long, some of the only juvenile S. herrmanni documented in nature. Juvenile and sub‐adult populations were found along the leeward reef edge of Heron Reef, a habitat characterized by shallow channels of sand between inter‐tidal coral reef and crustose coralline algae (CCA). Juvenile nurseries of sea cucumbers are rarely observed in nature, making this an important observation for understanding the recruitment and population biology of S. herrmanni. The presence of juveniles in the consolidated CCA habitat each year in autumn following the summer spawning period, and the absence of small individuals several months later in spring, suggests an ontogenetic migration or displacement of these individuals to adult habitat. The distribution of larger S. herrmanni suggests intra‐reef connectivity and migration into deeper lagoon areas. This study contributes to understanding the population dynamics of this vulnerable species, a consideration for fisheries management in light of increasing global harvest.     

Effective governance of a large and complex cross-jurisdictional marine protected area: Australia's Great Barrier Reef

Australia's Great Barrier Reef is the largest coral reef ecosystem on earth. The governance of such a large and iconic area is complex due to the overlapping federal and state (Queensland) jurisdictions. Since 1975 this globally significant area has been protected by pioneering federal legislation which enabled the ‘reasonable use’ of natural resources to co-exist with conservation, thus introducing the concept of a multiple-use marine park. In 1981 the Great Barrier Reef was listed as a UNESCO World Heritage Area. Today a federal multiple-use Marine Park covers 99% of the Great Barrier Reef Region and World Heritage Area, with the remaining areas under state jurisdiction. A close working partnership between the federal and state governments has evolved over 37 years and includes complementary legislation, joint field management and joint permits. In the face of increasing pressures, management of the Great Barrier Reef continues to be effective for a range of reasons, including a sound governance/legislative framework together with complementary federal/state legislation; integrated management with relevant federal and state agencies; and the application of ecosystem-based management principles both inside and outside the area of the marine park's jurisdiction. This integrated and comprehensive management model is widely regarded as effective by marine and coastal managers around the world.     

A broad-scale assessment of the risk to coastal seagrasses from cumulative threats

Informing the management of coastal marine habitats at broad spatial scales is difficult because of the costs associated with collecting and analyzing ecological data at that scale. Spatially explicit assessments of the risk to coastal marine habitats from cumulative threats provide an alternative approach by identifying sites that are exposed to multiple anthropogenic threats at broad scales. In this study, qualitative measures of vulnerability were combined with geospatial data to evaluate the risk to coastal seagrasses at the scale of the Great Barrier Reef (GBR) region (∼26,000 km²) of Queensland, Australia. The risk assessment outputs identified agricultural, urban and industrial runoff, and urban and port developments as the major anthropogenic activities threatening coastal seagrasses. ‘Hot spots’ with multiple threat exposure were all in industrial port locations and the southern two-thirds of the GBR. There is a distinct discontinuity in threat exposure along the GBR coast with 98% of seagrass meadows in the northern third exposed to only low levels of anthropogenic risk. The clustering of threat exposure is discussed in terms of coastal management policy. The approach outlined in this study provides management agencies a method of achieving maximum return for minimal investment in data collection at broad spatial scales by identifying sites where management intervention would be best targeted.     

Developing a long-term outlook for the Great Barrier Reef,Australia: A framework for adaptive management reporting underpinning an ecosystem-based management approach

The Great Barrier Reef Outlook Report 2009 was the first produced in response to a newly legislated requirement for five-yearly reports on the status of and outlook for the Great Barrier Reef. It adopted an ecosystem approach, assessing all habitats and species, ecosystem processes and major uses. By then considering the factors affecting the ecosystem, coupled with an assessment of management effectiveness, it provided a risk-based forward-looking projection for the ecosystem. Rarely has such a comprehensive, ecosystem-based report been produced to guide government action. With no pre-determined path to follow for interpreting the legislative requirements, the Great Barrier Reef Marine Park Authority (GBRMPA) developed a repeatable structure and method for Great Barrier Reef Outlook Reports that impartially and consistently considers the evidence and clearly presents the findings. The GBRMPA worked closely with relevant Australian and Queensland Government agencies as well as researchers, industry representatives and the community while developing the report. That such a report must be produced every five years allows an overview of the effectiveness of management responses to be regularly assessed. It also provides a transparent means of highlighting and tracking emerging risks facing the Great Barrier Reef.     

Benefits and opportunity costs of Australia's Coral Sea marine protected area: A precautionary tale

The paper analyses the benefits and costs of the Coral Sea Marine Reserve which, together with the contiguous Great Barrier Reef World Heritage Area, creates the largest marine protected area in the world. The benefits are found to be minimal, in both anthropocentric and ecocentric terms. Nevertheless establishment and management costs could be in the order of $A20 million and $A13 million, respectively. Meanwhile, serious depletion of the vital fish stocks of the largest tuna fishery in the world in the Western and Central Pacific Ocean—in which Australia is a management partner—continues, as does the rapid erosion of the unique and outstanding values of the Great Barrier Reef. It is concluded that current investment in the creation and management of the Coral Sea Reserve—in the face of the demonstrably urgent needs for investment in the management of marine resources in the near region and in Australia – is problematic.     

Contrasting patterns in the abundance of fish communities targeted by fishers on two coral reefs in southern Mozambique

Coastal populations of maritime countries in eastern Africa rely on fish as a primary source of protein, but baseline information on the abundance of fish communities on these coastlines is often lacking. We used baited remote underwater video stations to compare the abundance and diversity of reef fishes targeted by fishing at two sites in southern Mozambique, one at Lighthouse Reef within the Bazaruto Archipelago National Park and the other to the south at San Sebastian Reef on the San Sebastian Peninsula. Fish that are known targets of fisheries (mostly small-scale and artisanal) had an abundance that was almost three-times greater at San Sebastian Reef (80.22 ind. h^–1 [SE 18.00]) than at Lighthouse Reef (29.70 ind. h^–1 [SE 8.91]). Similarly, there was greater mean species richness at San Sebastian Reef (38.74 species h^–1 [SE 2.79]) than at Lighthouse Reef (25.37 species h^–1 [SE 3.66]). The main drivers of targeted fish abundance were habitat and depth, with shallow (<15 m) and mixed reef areas having the greatest abundance and richness. More sampling was done over sand habitat at Lighthouse Reef, which likely led to the lower abundance and species richness observed at this site; however, that finding could also be attributable to the fact that protection is provided to only a section of available coral reef habitat in a small area. Nevertheless, fish community structure was comparable between the sites, with similar proportions of carnivores (78–81%), herbivores (12–14%) and omnivores (7–8%). Our findings highlight the variation in species abundance and assemblages of coral-reef fish targeted by fishing in Mozambique and emphasise the importance of localised environmental variables as a driver of these patterns. To ensure maximum protection of Lighthouse Reef fish communities, we recommend an extension of the no-take zone to include the entire reef complex.     

New evidence for drowned shelf edge reefs in the Great Barrier Reef,Australia

We present four new high-resolution multibeam bathymetry datasets from the shelf edge of the northern Great Barrier Reef (GBR). Analysis of these data, combined with Chirp sub-bottom profiles and existing submersible observation data provides a fresh insight into the detailed morphology and spatial distribution of submerged reefs and terraces at the shelf edge. An extensive and persistent line of drowned shelf edge reefs exist on the GBR margin in about 40 to 70 m. They appear as barrier reefs up to 200 m wide and comprising twin parallel ridges of rounded pinnacles. Subtle yet consistent terrace and step features lie between 78 and 114 m seaward of the shelf edge reefs in the southern study area. Submersible observations confirm that the drowned reefs now provide a favorable hard substrate for live soft corals and algae. They form a consistent and extensive seabed habitat that extends for possibly 900 km along the GBR shelf edge. The submerged reef and terraces features may reflect a complex history of growth and erosion during lower sea-levels, and are now capped by last deglaciation reef material.     

Bedload sediment transport dynamics in a macrotidal embayment, and implications for export to the southern Great Barrier Reef shelf

Keppel Bay is a macrotidal embayment on a tectonically stable, tropical coast, which links the Fitzroy River with the Great Barrier Reef continental shelf. Estuaries and deltas act as conduits between catchments and inner shelf environments. Therefore, understanding sediment transport pathways in these complex systems is essential for the management of ecosystems such as coral-reefs that are potentially vulnerable to enhanced river sediment loads. Furthermore, the morphology and sediment dynamics of subtidal sand ridges and dunes are relatively poorly characterised in macrotidal estuaries, particularly in turbid, episodic systems such as the Fitzroy River and Keppel Bay. Our sedimentological analysis of seabed samples, shear-stress modelling and three-dimensional acoustic imaging reveals that Keppel Bay is a mixed wave- and tide-dominated estuarine system. Areas of sediment starvation and shoreward transport characterise the offshore zone, whereas a complex of both active and relict tidal sand ridges, and associated subaqueous dunes, dominate the relatively protected southern Keppel Bay. Transport within this region is highly dynamic and variable, with ebb-dominated sediment transport through tidal channels into the outer bay where there is a switch to wave-dominated shoreward transport. Ultimately, bedload sediments appear to be reworked back inshore and to the north, and are gradually infilling the bedrock-defined embayment. Our characterisation of the Keppel Bay system provides a detailed example of the physiography of the seaward portion of a tide-dominated system, and shows that sediment transport in these areas is influenced by a variable hydrodynamic regime as well as relict channels and bedrock topography.     

Benthic Foraminifera as ecological indicators for water quality on the Great Barrier Reef

Benthic foraminifera are established indicators for Water Quality (WQ) in Florida and the Caribbean. However, nearshore coral reefs of the Great Barrier Reef (GBR) and other Pacific regions are also subjected to increased nutrient and sediment loads. Here, we investigate the use of benthic foraminifera as indicators to assess status and trends of WQ on GBR reefs. We quantified several sediment parameters and the foraminiferan assemblage composition on 20 reefs in four geographic regions of the GBR, and along a water column nutrient and turbidity gradient. Twenty-seven easily recognisable benthic foraminiferan taxa (>63 μm) were distinguished. All four geographic regions differed significantly (p < 0.05, ANOSIM) in their assemblage composition, and a redundancy analysis (RDA) showed that sediment parameters only explained a small proportion of the variance in the assemblage composition. On nine reefs along a previously studied water quality gradient, foraminifera showed a distinct shift in assemblage composition towards larger symbiont-bearing taxa from turbid inner shelf towards clearer outer shelf reefs. A RDA separated symbiotic and aposymbiotic (heterotrophic) taxa. In addition, total suspended solid and water column chlorophyll a concentrations were negatively correlated, and optical depth and distance to the mainland were positively correlated, with the abundance of symbiont-bearing taxa. Several large foraminifera were identified as indicators for offshore, clear water conditions. In contrast, heterotrophic rotaliids and a species retaining plastids (Elphidium sp.) where highly characteristic for low light, higher nutrient conditions. Application of the FORAM index to GBR assemblage composition showed a significant increase in the value of this index with increased distance from the mainland in the Whitsunday region (r² = 0.75, p < 0.001), and therefore with increasing light and decreased nutrient availability. We conclude that it will be possible to apply this index to GBR and possibly other Pacific reefs after some adaptations and additional experimental work on species-specific limiting factors.     

The initiation of the southern central Great Barrier Reef: New multiproxy data from Pleistocene distal sediments from the Marion Plateau (NE Australia)

Significant synchronous shifts in the chemistry, mineralogy, grain sizes and color of the sediments at 6 m below sea floor (mbsf) at ODP Site 1195 on the Marion Plateau (NE Australia) are interpreted to reflect a major regional paleoceanographic change: the initiation of the southern province of the Great Barrier Reef (GBR). The onset of this massive carbonate production centre nearby resulted primarily in increased deposition of carbonate-rich sediments of neritic origin. Both sedimentation rate and terrigenous input record a coincident decline attributed to inshore trapping of materials behind the reefs. Our best estimate places the development of reef framework in the southern part of the GBR between 560 and 670 kyr B.P., based on an age model combining magnetostratigraphic and biostratigraphic data. The proposed estimation agrees with previous studies reporting an age between 500 and 930 kyr B.P., constraining more tightly their results. However, it does not support research placing the birth of the GBR in Marine Isotope Stage (MIS) 11 ( 400 kyr), nor the theory of a worldwide modern barrier reef development at that time.     

Reef parameterisation schemes with applications to tidal modelling

A variety of analytical models is used to investigate the effects on tidal propagation of a barrier reef system. These models specify reef geometry by two parameters. They can accommodate cases where water flows over reefs, as well as through inter-reef gaps, and also incorporate quadratic bottom friction. Although based on a one-dimensional approach, adaptations of a solution by Huthnance are used to account for the additional blockage effects associated with two-dimensional flow patterns near reef barriers. The present work adopts the philosophy that only a numerical approach can cope with the wide variations in reef geometry that are encountered in areas such as the Great Barrier Reef (GBR) region of Australia. Moreover, since typical model grids cannot resolve inter-reef gaps and other features with sufficient accuracy, a parameterised approach is needed to accommodate the conflicting demands of reef geometry and an economically feasible model resolution. The formulation of the analytical models is such that they can be applied immediately to standard numerical algorithms. Numerical experiments for flow in a channel, with a reef barrier across its centre, are used to test the parameterisation schemes. Comparison of the results for parameterised reefs with those obtained using extremely fine grids, shows convincing evidence of the success of the schemes. A separate method for automatically generating reef parameters has simplified the task of applying the methodology to real reefal systems. A tidal model of the Southern GBR, a region which exhibits unusual tidal behaviour, but which also has ample field data available for model testing, is used to demonstrate the accuracy that can be attained with the parameterised approach. Although tides are considered specifically in the present work, the formulation should be applicable with equal ease to the many other significant classes of low frequency motions in the GBR.     

Effect of agricultural activity on levels of organochlorine pesticides in hard corals, fish and molluscs from the Great Barrier Reef

An organochlorine baseline study of selected corals, fish and molluscs has established that lindane is the only consistently detectable persistent pesticide in Great Barrier Reef organisms sampled. Samples taken during 1976–1977 from twenty reefs between Heron Island and Lizard Island provide evidence from the distribution of lindane that the contamination is related to agricultural usage in the coastal sugar cane growing regions. Consideration is given to the possible mode of transport of lindane to the reef environment. No polychlorinated biphenyls were detected in any of the samples and only scattered samples contained levels of residues other than lindane. Inner marginal shelf reefs of the Great Barrier Reef may be the most pristine environment yet reported for organochlorine pollutants.     

A process to design a network of marine no-take areas: Lessons from the Great Barrier Reef

In the absence of consensus on the quantity and level of zoning protection required for coral reef and lagoon ecosystems, which process can guide decision makers? The Great Barrier Reef Marine Park Authority (GBRMPA) worked with experts in a collaborative process to develop a set of Biophysical Operational Principles to guide the design of a network of no-take areas. First, 82 expert scientists were asked to provide data and advice on the physical, biological and ecological dimensions of the Great Barrier Reef ecosystem. They recommended that an independent Scientific Steering Committee (the Committee) was set up. How this Committee worked successfully with the GBRMPA staff is detailed here in a manner to enable other resource managers to adopt the process if they are working in data-limited marine environments.     

Photochemical activity in waters of the Great Barrier Reef

Photochemical activity in waters of the Great Barrier Reef was investigated through studies on the vertical, horizontal and temporal distribution of hydrogen peroxide and factors influencing its generation and decay processes. Surface hydrogen peroxide concentrations varied from 15 to 110 nM and generally decreased with depth, though a number of anomalies were detected. Photochemical activity decreased with increasing distance from the coast reflecting the positive influence of terrestrial inputs to the hydrogen peroxide generation and decay processes. Increases in photochemical activity were observed in the proximity of coral reefs. Hydrogen peroxide concentrations in the region were influenced by wind-induced mixing processes, atmospheric inputs, anthropogenic activity and seasonal light regimes.     

A wave model for the Great Barrier Reef

A new wind wave generation model, WAMGBR, is presented that has been adapted from WAM especially for use in the complex geometry of the Great Barrier Reef. A technique (reef parameterization) has been presented that incorporates sub-grid scale dissipation caused by coral reefs. Three other improvements to WAM have been proposed. An explicit/implicit finite difference scheme has been implemented that allows for more efficient modelling (longer time steps) while maintaining diffusive characteristics that are at least as good as those of WAM. An offset in discrete angles creates more uniform diffusive characteristics. And, a transformed spherical coordinate system allows for more efficient grid sizes and smaller grid dependent refraction. Comparisons between modelling techniques and between model and measured data show that WAMGBR produces very good results in the difficult challenge of modelling both non-cyclonic and tropical cyclone waves in the geographically complex environment of the Great Barrier Reef.     

Purpose,policy, and practice: Intent and reality for on-ground management and outcomes of the Great Barrier Reef Marine Park

Notwithstanding a complex array of international, national, and local policies designed to protect biodiversity and manage human activities, the condition of Australia's Great Barrier Reef has been deteriorating. This trend indicates that policy settings are inadequate or the right policies have been prescribed but not effectively implemented. This study aimed to determine which policies influenced on-ground management of the Great Barrier Reef World Heritage Area and Marine Park, how they were implemented, and the challenges encountered by practitioners in applying policies. The research required content analysis of policy instruments relevant to various jurisdictional levels, and surveys and interviews with 19 key informants across jurisdictions and agencies. This study found that policy intent is not automatically translated into practice: international agreements are interpreted and reinterpreted along the policy pathway to on-ground management and, consequently, the aspirations of these agreements can be frustrated and their effectiveness diluted. Due to limits of jurisdictional responsibility, practitioners within the Great Barrier Reef Marine Park Authority are constrained in influencing key factors that impact on their capacity to address threats and manage outcomes. The major policy gap affecting management outcomes was the absence of a mechanism with which to manage cumulative impacts responsible for deterioration of key ecosystem processes and biodiversity. These findings highlight that effective policy implementation is a challenging task, limited by gaps between intentions and outcomes, inconsistencies, and conflicting agendas. An improved understanding of the policy implementation process and the policy-practitioner relationship is essential to enhancing links between policy and on-ground management.