Sensitivity analysis of a morphodynamic modelling system applied to a coastal lagoon inlet

This work investigates the recent morphological changes at the inlet of a complex coastal system (Ria de Aveiro lagoon, Portugal). This study was carried out using bathymetric data analysis and numerical simulations obtained with the 2DH morphodynamic modelling system MORSYS2D. The present simulations considered only tidal forcing, and a sensitivity analysis was performed by tuning the formula used to compute the sediment transports. A non-uniform sediment grain size distribution for the Ria de Aveiro inlet is considered in the numerical simulations, based on surveys performed in this area. The model results are analysed to assess if they resemble the observed trends of erosion and deposition, as calculated from bathymetric data. A quantitative analysis of the differences between the bathymetric changes obtained through surveys and the numerical results over a period of 3 years considering different sediment transport formulations shows that the formulations of Ackers and White (1973) and Engelund and Hansen (1967) are the ones that best describe the morphodynamic changes driven by tides in the Ria de Aveiro inlet.     

Heat budget, energy storage and hydrological regime in a coastal lagoon

For this paper, a physical heat budget model has been implemented using a fine-scale high-resolution meteorological data set in order to explore the influence of external factors, such as solar radiation and wind speed on the thermal regime and, therefore, the ecological dynamics of a shallow coastal ecosystem, Nueva lagoon (Southeast Spain). In addition, our results reveal that micrometeorological data (recorded with at least a bihourly frequency) are required to obtain reliable results from such a model. Net radiation accounted on average for around 95% of the non-advective fluxes and long wave radiation emitted accounted for around 70% of the non-advective losses. Evaporation was also a considerable component of the energy budget, accounting for about 20% of the total energy losses. In relation to advective heat fluxes, results from a water budget in Nueva lagoon have shown that groundwater discharge and irrigation surpluses contributed to the heat storage of Nueva lagoon, whereas the effect of heat advected via rainfall was negligible.     

Tide circulation patterns in a coastal lagoon under sea-level rise

This study evaluates the patterns and effects of relative sea-level rise on the tidal circulation of the basin of the Ria Formosa coastal lagoon using a process-based model that is solved on an unstructured mesh. To predict the changes in the lagoon tidal circulation in the year 2100, the model is forced by tides and a static sea level. The bathymetry and the basin geometry are updated in response to sea-level rise for three morphological response scenarios: no bed updating, barrier island rollover, and basin infilling. Model results indicate that sea-level rise (SLR) will change the baseline current velocity patterns inside the lagoon over the ~100-year study period, due to a strong reduction in the area of the intertidal basin. The basin infilling scenario is associated with the most important adjustments of the tidal circulation (i.e., increases in the flood velocities and delays in the ebb tide), together with an increase in the cumulative discharges of the tidal inlets. Under sea-level rise and in the basin infilling scenario, the salt marshes and tidal flats experience increases in the tidal range and current asymmetry. Basin infilling changes the sediment flushing capacity of the lagoon, leading to the attenuation of the flood dominance in the main inlet and the strengthening of the flood dominance in the two secondary inlets. The predictions resulting from these scenarios provide very useful information on the long-term evolution of similar coastal lagoons that experience varying degrees of SLR. This study highlights the need for research focusing on the quantification of the physical and socio-economic impacts of SLR on lagoon systems, thus enabling the development of effective adaptation strategies.     

Daily availability of nutrients and metals in a eutrophic meso-tidal coastal lagoon (Óbidos lagoon, Portugal)

This baseline reports daily variations of physico-chemical parameters, nutrients and metals in water of two sites [eutrophic conditions (BB) versus reference (LL)] in Óbidos coastal lagoon (Portugal). Dissolved oxygen in BB varied between 40% saturation levels (night) and 190% (daylight). , and ratios to Al of Mn, Fe and Pb in suspended particulate matter increased during the period of lower oxygenation, indicating exportation of nutrients and metals from the sediment to water at night. At LL, O₂ values oscillated always around 100%. and Mn/Al ratio at LL were always lower than at BB and no increases were found during the night. The input of and Mn provided from the sediment at BB during the night could surpass the contribution of freshwater discharges. PCA confirmed the separation of most samples from BB and LL. These results pointed to the importance of assessing chemical conditions over day-night cycles.     

Changes in benthic fish assemblages as a consequence of coastal works in a coastal lagoon: The Mar Menor (Spain, Western Mediterranean)

The benthic fish assemblage of the Mar Menor consisted of 37 species. Dominant species are: Gobius cobitis, Lipophrys pavo and Tripterygion tripteronotus on infralittoral rocks; Pomatoschistus marmoratus, Callionymus pussillus, Callionymus risso and Solea vulgaris on sandy bottoms and Gobius niger, Syngnathus abaster, Hippocampus ramulosus and Symphodus cinereus on Cymodocea nodosa-Caulerpa prolifera mixed beds. From 1985 to 1989 tourist development has led to the creation of new beaches and the installation of artificial rocky structures for retaining sediments. Dredging for the extraction of sand and subsequent pumping altered sediment characteristics causing a real stress leading to the substitution of typical sandy bottoms communities with Cymodocea nodosa by Caulerpa prolifera communities on mud. Soft bottom fish assemblages responded to changes in vegetation cover and substratum characteristics mainly changing the species composition, while artificial hard substrata contain a similar fish community than natural ones, harbouring even richer and more diverse assemblages. This positive effect of breakwaters should not obscure their likely negative effects on hydrodynamics and the subsequent changes of sediment quality and vegetation cover on the breakwaters' area of influence.     

Remote and local forcing of a coastal lagoon: The Virginia Coast Reserve

The effects of local and remote wind forcing of water level heights in the Virginia Coast Reserve (VCR) are examined in order to determine the significant forces governing estuarine motions over subtidal time scales. Recent (1996–2008) data from tide and wind stations in the lagoon, a tide station to the north at Sandy Hook, NJ, and one offshore wind station at the Chesapeake Light Tower are examined. Sea surface height spectrum calculations reveal significant diurnal and semidiurnal tidal effects along with subtidal variations, but a suppressed inertial signal. Sea-surface heights (SSH) with 2–5 day periods at Wachapreague, VA are coherent with those at Sandy Hook and lag them in time, suggesting that southward-propagating continental shelf waves provide subtidal variability within the lagoon. The coherence between lagoon winds and sea surface height, as well as between winds and cross-lagoon sea height gradient, were significant at a relatively small number of frequency and wind direction combinations. The frequencies at which this wind forcing occurs are the tidal and subtidal bands present to the north, so that lagoon winds selectively augment existing SSH signals, but do not generate them. The impact of the wind direction is closely related to the geometry of the lagoon and bounding landmasses. The effect of wind stress is also constrained by geometry in affecting the cross-lagoon water height gradient. Water levels at subtidal frequencies are likely forced by a combination of local wind forcing, remote wind forcing and oceanic forcing modified by the complex topography of the lagoon, shelf, and barrier islands.     

ROBUST: The ROle of BUffering capacities in STabilising coastal lagoon ecosystems

“Buffer capacities” has been defined in ecology as a holistic concept (e.g., Integration of Ecosystem Theories: A Pattern, second ed. Kluwer, Dordrecht, 1997, 388pp), but we show that it can also be worked out in mechanistic studies. Our mechanistic approach highlights that “buffering capacities” can be depleted progressively, and, therefore, we make a distinction between current and potential “buffering capacities”. We have applied this concept to understand the limited “local stability” in seagrass ecosystems and their vulnerability towards structural changes into macro-algal dominated communities. We explored the following processes and studied how they confer buffering capacities to the seagrass ecosystem: (i) net autotrophy is persistent in Zostera noltii meadows where plant assimilation acts as a sink for nutrients, this contrasted with the Ulva system that shifted back and forth between net autotrophy and net heterotrophy; (ii) the Z. noltii ecosystem possesses a certain albeit rather limited capacity to modify the balance between nitrogen fixation and denitrification, i.e., it was found that in situ nitrogen fixation always exceeded denitrification; (iii) the nitrogen demand of organoheterotrophic bacteria in the sediment results in nitrogen retention of N in the sediment and hence a buffer against release of nitrogen compounds from sediments, (iv) habitat diversification in seagrass meadows provides shelter for meiofauna and hence buffering against adverse conditions, (v) sedimentary iron provides a buffer against noxious sulfide (note: bacterial sulfide production is enhanced in anoxic sediment niches by increased organic matter loading). On the other hand, in the coastal system we studied, sedimentary iron appears less important as a redox-coupled buffer system against phosphate loading. This is because most inorganic phosphate is bound to calcium rather than to iron. In addition, our studies have highlighted the importance of plant–microbe interactions in the seagrass meadows.     

Long-term macrozoobenthos changes in a shallow boreal lagoon: Comparison of a recent biodiversity inventory with historical data

The European water framework directive (WFD) aims at achieving good ecological status of water bodies, which implies assessment of their current ecological quality status in respect to defined reference (pristine) conditions. In this paper, two historical biodiversity datasets (from 1920s and 1950s) and results from the recent inventory are used to trace the long-term changes of the macrozoobenthos in the eutrophic boreal lagoon of the Baltic Sea.In comparison of datasets the highest congruence was obtained for molluscs and malacostracan crustaceans, which also had a similar level of taxonomic emphasis between studies. Considering inconsistencies in methodology and taxonomic determination, only few species extinctions in these groups did likely occur during the last 100 years. Two amphipod species (Gammarus pulex and Gammarus lacustris) were not found during the recent survey, whereas five new species of this taxonomic group occurred in the lagoon since 1950s. The causes of these extinctions remain unclear; however displacement by established new amphipods cannot be excluded. Theodoxus fluviatilis was recently recorded in the very restricted area of the lagoon, while in earlier studies the species was mentioned as common and widely distributed in the water body. On the other hand, 10 gastropod species and 9 bivalves were reported for the first time in the lagoon and most likely have been overlooked in earlier surveys. Approximately 10% of the species have their origin outside the Baltic Sea basin and the number of invasions considerably exceeds the number of likely extinctions. Assessment scheme of such changes is unclear following WFD guidelines, therefore elaboration of a framework for evaluation of the alien species diversity in a context of local biodiversity should attain more effort when implementing the WFD.     

Model simulations of tidal changes in a coastal lagoon,the Ria de Aveiro (Portugal)

Tidal changes in the Ria de Aveiro lagoon, Portugal, show an average increase of 0.245 m in M₂ amplitude and an average 17.4° decrease in M₂ phase, over 16 years (1987–2004). This paper investigates the causes of these changes using: (a) an analytical model and (b) hydrodynamic (vertically integrated) model of the Ria de Aveiro lagoon.     

Tracing anthropogenically driven groundwater discharge into a coastal lagoon from southern Brazil

We investigated the distribution of naturally occurring geochemical tracers (²²²Rn, ²²³Ra, ²²⁴Ra, ²²⁶Ra, CH₄, δ¹⁸O, and δ²H) in the water column and adjacent groundwater of Mangueira Lagoon as proxies of groundwater discharge. Mangueira Lagoon is a large (90 km long), shallow (4–5 m deep), fresh, and non-tidal coastal lagoon in southern Brazil surrounded by extensively irrigated rice plantations and numerous irrigation canals. We hypothesized that the annual, intense irrigation for rice agriculture creates extreme conditions that seasonally change groundwater discharge patterns in the adjacent lagoon. We further supposed that dredging of irrigation canals alters groundwater fluxes.

While the activities of ²²²Rn in shallow groundwater were 2–3 orders of magnitude higher than in surface water, CH₄ and radium isotopes were only 1 order of magnitude higher. Therefore, ²²²Rn appears to be the preferred groundwater tracer in this system. Radon concentrations and conductivities were dramatically higher near the pump house of rice irrigation canals, consistent with a groundwater source. Modeling of radon inventories accounting for total inputs (groundwater advection, diffusion from sediments, and decay of ²²⁶Ra) and losses (atmospheric evasion, horizontal mixing and decay) indicated that groundwater advection rates in the irrigation canals (25 cm/d) are over 2 orders of magnitude higher than along the shoreline (0.1 cm/d). Nearly 75% of the total area of the canals is found in the southern half of the lagoon, where groundwater inputs seem to be higher as also indicated by methane and stable isotope trends. In spite of the relatively small area of the canals, we estimate that they contribute nearly 70% of the total (57,000 m³/d) groundwater input into the entire Mangueira Lagoon. We suggest that the dredging of these canals cut through aquitards which previously restricted upward advection from the underlying permeable strata. The irrigation channels may therefore represent an important but previously overlooked source of nutrients and other dissolved chemicals derived from agricultural practices into the lagoon.     

Changes in zooplankton communities along a mercury contamination gradient in a coastal lagoon (Ria de Aveiro,Portugal)

The main objective of this paper was to evaluate the impact of mercury on the zooplankton communities’ structure and functioning and their bioaccumulation patterns along a contamination gradient in a temperate coastal lagoon. Our results demonstrated that total abundance was not negatively affected by Hg contamination, since the most contaminated areas presented the highest values, being the copepod Acartia tonsa the dominant species, which means that it is a very well adapted and tolerant species to mercury. Nevertheless, negative effects were observed in terms of species diversity, since the most contaminated areas presented the lowest values of species richness, evenness and heterogeneity. Moreover, the spatial mercury gradient was reflected on the bioaccumulation patterns of the zooplankton communities. This reinforces the idea that zooplankton can be considered as an important vehicle of mercury transfer through the food pelagic web since it constitutes a primordial food resource for several commercial fish species.     

Bed diversity in the shallow water environment of Pappas lagoon in Greece

<正>Acoustic classification systems and the Sediment Trend Analysis method were used to identify and map the bed diversity in a very shallow(3.0m),coastal lagoon,Pappas lagoon,Western Greece. Analogue acoustic data,collected by means of a 100 kHz side scan sonar system,were digitized and classified into six acoustic classes using recently developed acoustic classification systems (SonarClass,TargAn).By comparing the acoustic classes to ground truth data consisting of sediment grain size and visual inspection of the lagoon-bed,it is demonstrated that the six acoustic classes correlate well with the predominant surface sediment types and vegetation.Thus the spatial distribution of the classes can be considered to represent the spatial pattern of the sedimentary assemblages of the lagoon.The grain size trend analysis identified three dominant sediment pathways and directional trends which could be related to the predominant wind direction,the sediment influx through the inlets and the sediment supply from a small stream in the southern part of the lagoon.The integration of acoustic and sedimentological data together with advanced data processing systems leads to a better understanding of the sedimentary,morphological and biological processes in a shallow lagoon in different spatial and temporal scales and will therefore be beneficial to both sedimentological and biotic-diversity studies.     

Establishing the wave climate influence on the morphodynamics of a coastal lagoon inlet

The morphologic changes in estuaries and coastal lagoons are very complex and constitute a challenging task in coastal research. The bathymetric changes result from the combined action of tides, waves, rivers discharge and wind stress in the area of interest. Additionally, an accurate knowledge of the sediment transport is essential to achieve a good morphological characterization. This work establishes the influence of the wave climate on the morphodynamics of the Ria de Aveiro lagoon inlet by analysing the numerical results of the morphodynamic modelling system MORSYS2D. The numerical simulations considered a realistic coupled forcing of tidal currents and waves. The computed sediment fluxes and bathymetric changes are analysed and compared with the erosion and accretion trends obtained from the numerical simulations forced only by tidal currents, in order to establish the wave climate influence. The final bathymetry and the corresponding changes are compared with bathymetric data collected through surveys. It is concluded that: (a) the morphodynamics of the study area is dominated by the wave regime in the lagoon inlet and nearshore areas, while in the inner areas is tidally dominated; and (b) the inclusion of the wave regime forcing constitutes an improvement in order to accurately reproduce the local morphodynamics.     

Nutrient mediated stress on the marine communities of a coastal lagoon (Puerto Galera, Philippines)

Puerto Galera Bay is a coastal lagoon with a variety of marine habitats and high species diversity. It is an area in the Phillippines where the growing influence of human activities is affecting the quality of its marine resources. This study examined the distribution and behaviour of nutrients and the physical hydrography of Puerto Galera Bay and determined how its physico-chemical nature affected the condition of biotic components in the bay. The relative importance of the nitrogen and phosphorus signals were used as indicators to implicate the influence of sewage and run-off into the bay. A nutrient pool accumulated in the bay as a result of low flushing rates. The interaction of hydrodynamic forcing with the biota have implications on the phytoplankton production and coral communities in the area.     

Removal of234Th from a coastal sea: Funka Bay,Japan

In Funka Bay of Hokkaido, Japan, seawater, suspended matter and settling matter were collected once every month in the summer of 1974. These samples were analyzed for²³⁴Th, a short-lived daughter of dissolved²³⁸U. A pronounced disequilibrium between²³⁴Th and²³⁸U, and a highly variable concentration of²³⁴Th were found. Positive correlation, however, exist among the deficiency of²³⁴Th relative to²³⁸U in seawater, the concentration of particulate²³⁴Th, the fraction of particulate²³⁴Th to total²³⁴Th in seawater, the total dry weight of suspended matter, and the primary productivity during the month previous to sampling. The specific activity of²³⁴Th for the settling particles (620 ± 170 dpm/g) was nearly equal to that for suspended particles (720 ± 600 dpm/g) but much greater than that for plankton (47 ± 24 dpm/g). These facts suggest that suspended particles are somehow closely related to the removal of heavy metals from seawater, in spite of the negligibly small settling flux of suspended matter. The residence time of thorium in Funka Bay (mean depth: 60 m) is found to be about 60 days, which is nearly equal to those of²¹⁰Pb and²¹⁰Po.     

Benthic community response to habitat variation: A case of study from a natural protected area,the Celestun coastal lagoon

Little information currently exists on spatial and temporal benthic community variations in tropical coastal lagoons. Here, the benthic community response to habitat variation in the Celestun coastal lagoon, northwest Yucatan peninsula, was seasonally examined during the 1994–1995 climatic cycle into a grid of 12 sampling sites distributed along the salinity gradient of the lagoon. Habitat variation was assessed through physical factors associated both to the water column (e.g. salinity) and the bottom sediment (e.g. sand, silt and clay fractions). The benthic community response was assessed through species diversity measures and abundance. Under the influence of climatic seasonality, variations in habitat conditions followed by changes in the benthic community characteristics were expected. Results from two-way ANOVAs showed that for the period of study, Celestun lagoon was more heterogeneous along the spatial axis of variability than along the temporal one. Multiple regression analysis showed that salinity was spatially the main factor influencing the benthic community characteristics. Temporally, the sediment characteristics were observed to exert significant effects on the species diversity characteristics but not on abundance. Other variables assessed (dissolved oxygen, pH, temperature and water column transparency) exhibited no significant covariance with species diversity and abundance. Since generated from historical data, these results have the potential to be useful as a benchmark to the establishment of monitoring programs in the light of the increasing anthropogenic pressure on the natural resources of the lagoon and surrounding coastal area.     

Seasonal variations in coastal debris on Awaji Island, Japan

The subject of our study was Awaji Island, an island located in the west of Japan that is surrounded by sea and that has serious problems relating to coastal debris. We conducted a long-term investigation focusing on three beaches and evaluated the results. The study was designed to develop an understanding of the actual situation, to inform local citizens, and raise their concerns about the problem of debris with a view to taking action against it. We obtained the following results: the amount, type, and ratio of debris changed according to weather and ocean conditions; debris also differs according to geographical conditions; social and economic activities of the surrounding area influence the type of debris encountered. Following this study, we have continued our investigation, and are continuing to gather data. At the same time, it is important to spread our ideas and enlighten people so as to encourage them not to dump debris. We hope that these actions manage to raise the level of consciousness among local citizens and to expand their anti-debris activities.     

Modeling of climate change impacts on Lake Burullus,coastal lagoon (Egypt)

Coastal lagoons are particularly vulnerable to climate change, in particular, Sea Level Rise (SLR) due to their shallowness. Lake Burullus provides a variety of socio-economic services as the second largest coastal lagoon in Egypt. Recently, it has experienced significant ecological deterioration. Thus, its ecosystem is fragile in the face of anthropogenic induced changes. The main objective of the current study is to investigate the climate change impacts on characteristics of Lake Burullus. A depth averaged hydro-ecological modeling system, MIKE21, was applied to develop an eco - hydrodynamic model for the lake. The developed model was calibrated and verified for two successive years: July 2011–June 2012 and July 2012–June 2013. The model simulations exhibited good agreement with the measurements during the calibration and verification processes. Six different Regional Climate Models (RCMs) were compared, using six different statistical metrics, to determine the most accurate one for the study area. The required meteorological input, including surface air temperature, precipitation, and evaporation were derived from the selected RCM. The meteorological input was extracted for two different years in the 21 ^st century considering one Representative Concentration Pathways (RCPs) scenario, based on the Intergovernmental Panel on Climate Change (IPCC) 5th Report. Regional SLR projections for the Mediterranean Sea for the selected RCP scenario and the two studied years were obtained. These future climate change estimates were used to modify the validated model of the lake. A sensitivity analysis was applied to assess effect of future climatic conditions and SLR, separately. The results revealed that the lake water depths will increase and it will be warmer and more saline. Significant spatial variability of the studied parameters under climate change forcing is expected. Consequently, climate change is going to restrict the lake's ability to preserve the present-day species. An urgent management plan involving adaptation works, should be implemented to reduce such potential species losses in Egyptian lagoons.