Physical–biological coupling in the Pearl River Estuary

The Pearl River Estuary is a subtropical estuary and the second largest in China based on discharge volume from the Pearl River. Processes in the estuary vary spatially and temporally (wet vs dry season). In the dry season at the head of the estuary, hypoxic and nearly anoxic conditions occur and NH₄ reaches >600 μM, NO₃ is ∼300 μM and nitrite is ∼60 μM indicating that nitrification and denitrification may be important dry season processes in the region extending 40 km upstream of the Humen outlet. There are very few biological studies conducted in this upper section of the estuary in either the dry or wet seasons and hence there is a need for further research in this region of the river. In the wet season, the salinity wedge extends to the Hongqimen outlet and oxygen is low (35–80% saturation). Nitrate is ∼100 μM, silicate ∼140 μM; and phosphate is relatively low at ∼0.5 μM, yielding an N:P ratio up to ∼200:1 in summer. Nutrients decrease in the lower estuary and primary productivity may become potentially P-limited. Eutrophication is not as severe as one would expect from the nutrient inputs from the Pearl River and from Hong Kong's sewage discharge. This estuary shows a remarkable capacity to cope with excessive nutrients. Physical processes such as river discharge, tidal flushing, turbulent dispersion, wind-induced mixing, and estuarine circulation play an important role in controlling the production and accumulation of algal blooms and the potential occurrence of hypoxia. Superimposed on the physical processes of the estuary are the chemical and biological processes involved in the production of the bloom. For example, the 100N:1P ratio indicates that P potentially limits the amount of algal biomass (and potential biological oxygen demand) in summer. While extended periods of hypoxia are rare in Hong Kong waters, episodic events have been reported to occur during late summer due to factors such as low wind, high rainfall and river discharge which result in strong density stratification that significantly dampens vertical mixing processes. Nutrient loads are likely to change over the next several decades and monitoring programs are essential to detect the response of the ecosystem due to the future changes in nutrient loading and the ratio of nutrients.     

Nitrogen over enrichment in subtropical Pearl River estuarine coastal waters: Possible causes and consequences

Hong Kong is surrounded by estuarine, coastal and oceanic waters. In this study, monthly averages over a 10 year time series of salinity, temperature, chlorophyll a (chl a), dissolved oxygen (DO), dissolved inorganic nitrogen (DIN), silicate (SiO₄) and orthophosphate (PO₄) at three representative stations around Hong Kong were used to examine if excess nitrogen in estuarine influenced waters is due to P limitation. The monthly distribution clearly shows the dominant influence of the seasonal change in river discharge in the Pearl River estuary and adjacent coastal waters. In winter, the river discharge is small and more oceanic waters are dominant and as a result, salinity is high, and chlorophyll and nutrients are low. In summer, when the river discharge is high, salinity decreases and nutrients increase. DIN is very high, reaching 100 μM in the estuary. This indicates over enrichment of nitrogen relative to P and consequently there is an excess of N in coastal waters of Hong Kong. P remains low (∼1 μM) and can potentially limit both phytoplankton biomass and N utilization which was demonstrated in field incubation experiments. P limitation would result in excess N being left in the estuarine influenced waters south of Hong Kong. Phosphate concentration is lower in the Pearl River estuary than in many other eutrophied estuaries. Therefore, this relatively low PO₄ concentration should be a significant factor limiting a further increase in the magnitude of algal biomass and in the degree of eutrophication in the Pearl River estuary. The export of the excess N offshore into the northern South China Sea may result in an increase in the size of the region that is P limited in summer.     

Water quality in the Dickinson Bayou watershed (Texas, Gulf of Mexico) and health issues

The Dickinson Bayou watershed (near Houston, Texas, Gulf of Mexico) provides habitat for numerous coastally influenced communities of wildlife, including scores of birds and fish. Encroaching development and impervious surfaces are altering the habitat and degrading water quality. Herein we have defined the current health of the bayou using water quality data collected between 2000 and 2006. Elevated bacteria (fecal coliform, Escherichia coli and Enterococcus) and depressed dissolved oxygen concentrations (often <3 mg l⁻¹) are the two major impairments to this ecosystem. While nutrient ratios indicate primary productivity may be nitrogen limited, concerns of eutrophication persist because the bayou has a low intrinsic flushing rate. Consistent with this is the magnitude of algal blooms (ca. 100 μg chl l⁻¹) which often occur in spring/summer. The findings of this study will assist with the understanding of the influence of urban development on small watersheds.     

Estuarine mud flocculation properties determined using an annular mini-flume and the LabSFLOC system

Most entrained estuarine sediment mass occurs as flocs. Parameterising flocculation has proven difficult as it is a dynamically active process dependent on a set of complex interactions between the sediment, fluid and the flow. However the natural variability in an estuary makes it difficult to study the factors that influence the behaviour of flocculation in a systematic manner. This paper presents preliminary results from a laboratory study that examined how floc properties of a natural estuarine mud from the Medway (UK), evolved in response to varying levels of suspended sediment concentration and induced turbulent shearing. The experiments utilised the LabSFLOC floc video camera system, in combination with an annular mini-flume to shear the suspended sediment slurries. The flows created in the mini-flume produced average shear stresses, at the floc sampling height, ranging from 0.01 N m⁻² to a peak of 1.03 N m⁻². Nominal suspended particulate matter concentrations of 100, 600 and 2000 mg l⁻¹ were introduced into the flume. The experimental runs produced individual flocs ranging in size from microflocs of 22.2 μm to macroflocs 583.7 μm in diameter. Average settling velocities ranged from 0.01 to 26.1 mm s⁻¹, whilst floc effective densities varied from 3.5 up to 2000 kg m⁻³. Low concentration and low shear stress were seen to produce an even distribution of floc mass between the macrofloc (>160 μm) and microfloc (<160 μm) fractions. As both concentration and stress rose, the proportion of macrofloc mass increased, until they represented over 80% of the suspended matter. A maximum average macrofloc settling velocity of 3.3 mm s⁻¹ was attained at a shear stress of 0.45 N m⁻². Peak turbulence conditions resulted in deflocculation, limiting the macrofloc fall velocity to only 1.1 mm s⁻¹ and placing over 60% of the mass in the microfloc size range. A statistical analysis of the data suggests that the combined influence of both suspended concentration and turbulent shear controls the settling velocity of the fragile, low density macroflocs.     

Residual circulation in eastern Long Island Sound: Observed transverse-vertical structure and exchange transport

Residual currents in eastern Long Island Sound (LIS) are investigated using direct velocity measurements from an acoustic Doppler current profiler mounted on a ferry. Circulation at the site has major influence on exchange of water and water-borne materials between LIS and the coastal ocean. Ferry sampling enables sufficient averaging to isolate the residual motion from stronger tidal currents, and captures its spatial structure. Mean along-estuary currents based on about 2 years of sampling reveal a vigorous estuarine exchange circulation (peak 25–30 cm s⁻¹ at depth), with flow eastward out of the estuary in the upper water column of the southern half and inward westward movement strengthening with depth over the central and north section. Application of volume conservation implies there is a strong eastward current out of the estuary in the shallowest 7 m where no measurements were made, as expected for estuarine exchange flow. Water from the Connecticut River, entering LIS on the north shore nearby to the west, does not appear to exit the estuary directly eastward along the north shore unless this occurs wholly in the shallow layer not sampled. Transverse currents have complex structure with generally northward (southward) flow where shallow outward (deep inward) motion occurs. An idealized semi-analytic solution for transverse-vertical structure of along- and across-estuary flow has limited success accounting for observed currents, despite inclusion of bathymetric, frictional, and rotational influences; this suggests the importance in LIS of dynamics it omits, in particular stratification, or does not represent with sufficient realism, such as complex bathymetry. Estimated annual-mean exchange volume transport, based on the better-sampled deep inward component, is 22,700±5000 m³ s⁻¹. This is comparable to previous estimates from some salt budget and hydrographic analyses, and implies advection contributes substantially to the total salt transport, contrary to results of a recent box-model analysis of hydrographic measurements. At seasonal timescales, changes to the transverse-vertical velocity structure are modest, but amplitude variations cause exchange volume transport increases (decreases) to 30,000 m³ s⁻¹ (18,000 m³ s⁻¹) in the summer (winter) months; a power-law dependence of exchange on river flow, as seen in other estuaries, is not supported. Strengthened summer transport is associated with enhanced stratification, suggesting that mixing effects modulate the exchange. To the extent that advection by residual flow contributes to total exchange between LIS and coastal waters, the flushing of materials from LIS should occur substantially faster in summer than in winter.     

Measuring natural phytoplankton fluorescence and biomass: a case study of algal bloom in the Pearl River estuary

A moored optical buoy was deployed in the Pearl River estuarine waters for a 15-day period. A four-day algal bloom event occurred during this study period. Both chlorophyll a concentration and algal cell density (a proxy for biomass) changed dramatically before and after the event. The chlorophyll concentration at a 2.3 m depth rose from 5.15 mg/m⁻³ at 15:00 h on August 19 to 23.62 mg/m⁻³ at 9:00 h on August 21, and then decreased to 3.24 mg/m⁻³ at 15:00 h on August 24. The corresponding cell density ranged from 1.57 × 10⁵ to 1.76 × 10⁶ cells/L. We used normalized fluorescence line height (NFLH) and normalized fluorescence intensity (NFI) in order to determine fluorescence activity. Combined with the in situ sampling dataset, we were able to correlate natural fluorescence (NFLH and NFI) with chlorophyll a concentrations, and found correlation coefficients of 0.72 and 0.75, respectively. We also found correlations between natural fluorescence and cell density, with correlation coefficients of 0.71 and 0.65, respectively. These results indicate that applying continuous time series of natural fluorescence can reflect changes in biomass. This technique will prove extremely useful for in situ and real-time observations using an optical buoy. Although there are still problems to solve in the real-time observation of natural fluorescence in algal bloom events, we discuss the primary factors affecting fluorescence signals and suggest possible methods for mitigating these issues.     

The response of circulation and salinity in a micro-tidal estuary to sub-tidal oscillations in coastal sea surface elevation

Conceptual models of circulation theorise that the dominant forces controlling estuarine circulation are freshwater discharge from the riverine section (landward), tidal forcing from the ocean boundary, and gravitational circulation resulting from along-estuary gradients in density. In micro-tidal estuaries, sub-tidal water level changes (classified as those with periods between 3 and 10 days) with amplitudes comparable to the spring tidal range can significantly influence the circulation and distribution of water properties. Field measurements obtained from the Swan River Estuary, a diurnal, micro-tidal estuary in south-western Australia, indicated that sub-tidal water level changes at the ocean boundary were predominantly from remotely forced continental shelf waves (CSWs). The sub-tidal water levels had maximum amplitudes of 0.8 m, were comparable to the maximum tidal range of 0.6 m, propagated into the estuary to its tidal limit, and modified water levels in the whole estuary over several days. These oscillations dominated the circulation and distribution of water properties in the estuary through changing the salt wedge location and increasing the bottom water salinity by 7 units over 3 days. The observed salt wedge excursion forced by CSW was up to 5 km, whereas the maximum tidal excursion was 1.2 km. The response of the residual currents and the salinity distribution lagged behind the water level changes by ∼24 h. It was proposed that the sub-tidal forcing at the ocean boundary, which changed the circulation, salinity, and dissolved oxygen in the upper estuary, was due to a combination of two processes: (1) a gravity current generated by a process similar to a lock exchange mechanism and (2) amplified along-estuary density gradients in the upper estuary, which enhanced the gravitational circulation in the estuary. The salt intrusions under the sub-tidal forcing caused the rapid movement of anoxic water upstream, with significant implications for water quality and estuarine health.     

Bacterial distribution and nutrient limitation in relation to different water masses in the coastal and northwestern South China Sea in late summer

In order to study heterotrophic bacterial responses to upwelling in the northern South China Sea (SCS) and the influence of the Pearl River estuarine coastal plume, two cruises were conducted to investigate the distribution of bacterial abundance (BA) in September-October 2004 and 2005, along with measurements of inorganic nutrients, particulate and dissolved organic carbon (POC and DOC) in 2004. Surface BA was 10±2×10⁸ cells l⁻¹ near the Pearl River estuary and 6±1×10⁸ cells l⁻¹ in oligotrophic offshore waters of the SCS in both 2004 and 2005. In contrast, BA was 15±3×10⁸ cells l⁻¹ in western coastal waters during the upwelling period in 2004, and decreased to 10±2×10⁸ cells l⁻¹ in 2005 when upwelling was absent, indicating that upwelling exerted a significant influence on BA (p<0.05). Nutrient addition experiments were conducted and showed that phosphorus availability limited bacterial growth in coastal upwelled waters and near the Pearl River estuary, while bacteria in offshore waters were mainly C limited. The upwelled waters brought up considerable amounts of nutrients to the surface (e.g. DOC ∼70 μM, DIN ∼4 μM and PO₄ ∼0.1 μM). However, P addition increased BA and bacterial production (BP) by 20±5% and 30±5%, respectively, in the upwelled water, which was higher than those near the Pearl River estuary (2±1% and 20±3%, respectively) (p<0.05). In the upwelled waters, phosphorus was low relative to nitrogen, which resulted in a high N:P ratio of 40:1 at the surface and hence potential P deficiency in bacteria. Consequently, there was a higher increase in BP in response to a PO₄ addition.     

ECOLOGICAL CONSEQUENCES OF SOIL EROSION AND SEDIMENTATION

IHISTORICALRECORDSSoilerosioniscloselyrelatedtorainfallandgreatlyenhancedbydeforestationforagricultUreandurbansuburbandevelopment.Amongtheeffectsofsoilerosionarethelossoftopsoilandaconsequentdecreaseincropproductivity.Erodedsoilisalsodepositedintoaquaticsystems,thuslesseningwaterqualityandleadingtodepletionoftheaquaticfoodresource.Italsocausessiltationofwaterwaysmakingthemineffectiveforcommercialtransportaswellasincreasingtheriskoffloods.Theimpactofsedimenterosionanddepositiononhumanso…     

Anthropogenic organic matter inputs indicated by sedimentary fecal steroids in a large South American tropical estuary (Paranaguá estuarine system, Brazil)

Urban sewage is considered one of the most important sources of marine pollution in South America, because most coastal cities do not have proper facilities to treat and dispose of sewage. The Paranaguá estuarine system is an important estuarine environment of the South American coast where fishing, urban and tourist activities, industries and the main Brazilian grain shipping port are potential sources of pollution in this area. The anthropogenic input of sedimentary organic matter, represented by sewage contribution, was evaluated by fecal steroid concentrations. The coprostanol levels were comparatively low (<0.10 μg g⁻¹), except at the sites close to Paranaguá city, where the coprostanol concentration reached 2.22 μg g⁻¹ showing strong sewage contamination. Fecal steroid levels were comparable to the lower to midrange concentrations reported for coastal sediments worldwide. The results of this work demonstrated that sewage pollution can be considered a problem for a small part of the Paranaguá estuary.     

Responses of a coastal phytoplankton community to increased nutrient input from the Changjiang (Yangtze) River

Nutrient input from the Changjiang River (Yangtze River) has been increasing dramatically since the 1960s. At the mouth of the Changjiang River, the nitrate concentration has increased about three-fold in 40 years, from 20.5 μmol/L in the 1960s to 59.1 μmol/L in the 1980s and to 80.6 μmol/L in 1990–2004. Phosphate concentration increased by a factor of 30%, from 0.59 μmol/L in the 1980s to 0.77 μmol/L in 1990–2004. The increasing nitrate input has arisen mostly from the mid and lower reaches of the Changjiang River, where the river meets one of the most strongly developed agriculture areas in China. Responses of the coastal phytoplankton community to the increasing nutrient inputs are also seen in the available monitoring data. First, a trend of increasing phytoplankton standing stock from 1984 to 2002 appeared in the Changjiang River estuary and adjacent coastal waters, especially in late spring. Secondly, the proportion of diatoms in the whole phytoplankton community showed a decreasing trend from about 85% in 1984 to about 60% in 2000. Finally, red tides/harmful algal blooms increased dramatically in this area in terms of both number and scale. About 30–80 red tide events were recorded each year from 2000 to 2005 in the East China Sea. The scale of some blooms has been in excess of 10,000 km².     

Phytoplankton dynamics in and near the highly eutrophic Pearl River Estuary,South China Sea

The dynamics of size-fractionated phytoplankton along the salinity gradient in the Pearl River Estuary and the adjacent near-shore oceanic water was investigated using microscopic, flow cytometric, and chlorophyll analyses in the early spring (March) and early autumn (September) of 2005. In the inner part of the estuary where salinity was less than 30, the phytoplankton community was dominated by micro- and nano-sized (3–200 μm) cells, particularly the diatom Skeletonema costatum, both in early spring and early autumn. In areas where salinity >30, including the mixing zone and nearshore oceanic water, micro- and nano-sized cell populations dominated the phytoplankton assemblage during early spring when influence of river discharge was minimal, whereas pico-sized (≤3 μm) cell populations were dominant during early autumn as a result of strong river discharge in the summer, with Synechococcus and pico-eukaryotes being predominant. Picophytoplankton were two orders of magnitude more abundant in early autumn (10⁶ cells mL⁻¹) than in early spring in the nearshore oceanic water. Nutrients delivered by freshwater input to the estuary were pushed toward high salinity (>30) areas as a result of short residence time, exerting a strong influence on phytoplankton abundance, especially picophytoplankton in the nearshore, otherwise oligotrophic, water. Influenced by high abundance of DIN and limitation in phosphorus, picophytoplankton in the adjacent nearshore oceanic water rose to prominence seasonally. Our results indicate that eutrophication in the Pearl River Estuary not only stimulates the growth of S. costatum in the nutrient-rich areas of the estuary but also appears to promote the growth of Synechococcus and pico-eukaryotes in the adjacent usually oligotrophic oceanic water at least during our autumn cruise.     

Effects of an estuarine plume-associated bloom on the carbonate system in the lower reaches of the Pearl River estuary and the coastal zone of the northern South China Sea

We observed a phytoplankton bloom downstream of a large estuarine plume induced by heavy precipitation during a cruise conducted in the Pearl River estuary and the northern South China Sea in May–June 2001. The plume delivered a significant amount of nutrients into the estuary and the adjacent coastal region, and enhanced stratification stimulating a phytoplankton bloom in the region near and offshore of Hong Kong. A several fold increase (0.2–1.8 μg Chl L⁻¹) in biomass (Chl a) was observed during the bloom. During the bloom event, the surface water phytoplankton community structure significantly shifted from a pico-phytoplankton dominated community to one dominated by micro-phytoplankton (>20 μm). In addition to increased Chl a, we observed a significant drawdown of pCO₂, biological uptake of dissolved inorganic carbon (DIC) and an associated enhancement of dissolved oxygen and pH, demonstrating enhanced photosynthesis during the bloom. During the bloom, we estimated a net DIC drawdown of 100–150 μmol kg⁻¹ and a TAlk increase of 0–50 μmol kg⁻¹. The mean sea–air CO₂ flux at the peak of the bloom was estimated to be as high as ∼−18 mmol m⁻² d⁻¹. For an average surface water depth of 5 m, a very high apparent biological CO₂ consumption rate of 70–110 mmol m⁻² d⁻¹ was estimated. This value is 2–6 times higher than the estimated air–sea exchange rate.     

A trophic model for the Danshuei River Estuary, a hypoxic estuary in northern Taiwan

The estuary of the Danshuei River, a hypoxic subtropical estuary, receives a high rate of untreated sewage effluent. The Ecopath with Ecosim software system was used to construct a mass-balanced trophic model for the estuary, and network analysis was used to characterize the structure and matter flow in the food web. The estuary model was comprised of 16 compartments, and the trophic levels varied from 1.0 for primary producers and detritus to 3.0 for carnivorous and piscivorous fishes. The large organic nutrient loading from the upper reaches has resulted in detritivory being more important than herbivory in the food web. The food-chain length of the estuary was relatively short when compared with other tropical/subtropical coastal systems. The shortness of food-chain length in the estuary could be attributed to the low biomass of the top predators. Consequently, the trophic efficiencies declined sharply for higher trophic levels due to low fractions of flows to the top predators and then high fractions to detritus. The low biomass of the top predators in the estuary was likely subject to over-exploitation and/or hypoxic water. Summation of individual rate measurements for primary production and respiration yielded an estimate of −1791 g WW m⁻² year⁻¹, or −95 g C m⁻² year⁻¹, suggesting a heterotrophic ecosystem, which implies that more organic matter was consumed than was produced in the estuary.     

Morphology and modern sedimentary deposits of the macrotidal Marapanim Estuary (Amazon,Brazil)

The northern Brazilian coast, east of the Amazon River is characterized by several macrotidal estuarine systems that harbor large mangrove areas with approximately 7600 km². The Marapanim Estuary is influenced by macrotidal regime with moderate waves influence. Morphologic units were investigated by using remote sensing images (i.e., Landsat-7 ETM+, RADARSAT- 1 Wide and SRTM) integrated with bathymetric data. The modern sedimentary deposits were analyzed from 67 cores collected by Vibracore and Rammkersonde systems. Analysis of morphology and surface sedimentary deposits of the Marapanim River reveal they are strongly influenced by the interaction of tidal, wave and fluvial currents. Based on these processes it was possible to recognize three distinct longitudinal facies zonation that revels the geological filling of a macrotidal estuary. The estuary mouth contain fine to medium marine sands strongly influenced by waves and tides, responsible for macrotidal sandy beaches and estuarine channel development, which are characterized by wave-ripple bedding and longitudinal cross-bedding sands. The estuary funnel is mainly influenced by tides that form wide tidal mudflats, colonized by mangroves, along the estuarine margin, with parallel laminations, lenticular bedding, root fragments and organic matter lenses. The upstream estuary contains coarse sand to gravel of fluvial origin. Massive mud with organic matter lenses, marks and roots fragments occur in the floodplain accumulates during seasonal flooding providing a slowly aggrading in the alluvial plain. This morphologic and depositional pattern show easily a tripartite zonation of a macrotidal estuary, that are in the final stage of filling.     

A report card and quality indicators for the Seine estuary: from scientific approach to operational tool

The scientific teams from the interdisciplinary Seine-Aval (SA) research program and the SA's operational pole, GIPSA (Groupement d'Intérêt Public Seine-Aval) have worked together to create a report card designed to help the Estuary Council (Conseil de l'Estuaire) revitalize its original functions: maintaining functional links between the various estuarine ecosystems, comprehending and managing the estuary's natural habitats and biological populations, and monitoring and improving the physical-chemical quality of the estuarine waters. The report card will be able to synthesize the information obtained from several system performance variables and available operational indicators. This approach, intended to guide the estuary managers, is the oeuvre of several scientific teams; it is particularly important in the context of the Water Framework Directive because it facilitates the elaboration of a group of relevant indicators, which can then be used as operational tools. A report card will provide decision-makers (e.g., political authorities; national, regional and local institutions and industries) with the key indicators for evaluating the system and predicting changes in terms of selected objectives, such as the preservation and restoration of the estuary's environmental functionalities. The final objective of the research is to choose among the available indicators to approximate potential ecological risks. Integrating the socio-economical data will perhaps lead to setting risk acceptability thresholds for the different uses of the Seine estuary. In the end, collaboration between the scientists, the managers, and the GIPSA operational pole will be essential to produce a viable report card about the environmental status of the Seine estuary. To illustrate the research now under way, this article presents the results for three actions undertaken, concerning: (i) physical indicators (i.e., an inventory of the estuary first as a whole, and then section by section); (ii) benthic indicators (i.e., seven indices which show a moderate EcoQ for the lower part of the estuary); and (iii) a eutrophication indicator (i.e., an indicator for coastal eutrophication potential (ICEP), which helps to limit the nutrient fluxes (N or P) that exceed the silica flux delivered by the Seine network, based on the Redfield ratios for algal propagation).     

Maintenance of estuarine water quality by mangroves occurs during flood periods: A case study of a subtropical mangrove wetland

Seasonal changes in water quality were measured in samples taken at various distances from shallow water across mudflat to mangroves during flood period and from mangroves across mudflat to shallow water during ebb period in a subtropical mangrove estuary (Zhangjiang Estuary, Fujian, China). The TN (total dissolved nitrogen), TP (total dissolved phosphorus), COD (chemical oxygen demand), and DOC (dissolved organic carbon) contents during the flood period were significantly higher than those during the ebb period. In contrast, the opposite was true for the POC (particulate organic carbon) content and transparency. The mangroves at Zhangjiang Estuary may trap nutrients at rates of 90.5 g N/m²/yr, 2.2 g TP/m²/yr, and 13.7 g C/m²/yr in the form of DOC, and export POC at a rate of 81.8 g/m²/yr. Our results support the hypothesis that the maintenance of estuarine water quality by mangroves occurs during flood periods.     

An assessment of a new settling velocity parameterisation for cohesive sediment transport modeling

An important element within the Defra funded Estuary Process Research project “EstProc” was the implementation of the new or refined algorithms, produced under EstProc, into cohesive sediment numerical models. The implementation stage was important as any extension in the understanding of estuarine processes from EstProc was required to be suitable for dissemination into the wider research community with a level of robustness for general applications demonstrated. This report describes work undertaken to implement the new Manning Floc Settling Velocity Model, developed during EstProc. All Manning component algorithms could be combined to provide estimates of mass settling flux. The algorithms are initially assessed in a number of 1-D scenarios, where the Manning model output is compared against both real observations and the output from alternative settling parameterisations. The Manning model is then implemented into a fully 3-D computational model (TELEMAC3D) of estuarine hydraulics and sediment transport of the Lower Thames estuary. The 3-D model results with the Manning algorithm included were compared to runs with a constant settling velocity of 0.5 mm s⁻¹ and settling velocity based on a simple linear multiplier of concentration and with the above mentioned observations of suspended concentration. The findings of the 1-D case studies found the Manning empirical settling model could reproduce 93% of the total mass settling flux observed over a spring tidal cycle. The floc model fit was even better within the turbidity maximum (TM) zone. A constant 0.5 mm s⁻¹ only estimated 15% of the TM mass flux, whereas the fixed 5 mm s⁻¹ settling rate over-predicted the TM mass flux by 47%. Both settling velocity as a simple linear function of concentration, and van Leussen's method, did not fare much better estimating less than half the observed flux during the various tidal and sub-tidal cycle periods. When the Manning-settling model was applied to a layer with suspended concentrations approaching 6 g l⁻¹, it calculated 96% of the observed mass flux. The main conclusions of the implementation exercise were that it was feasible to implement a complex relationship between settling velocity and concentration in a 3-D computational model of estuarine hydraulics, without producing any significant increase in model run times or reducing model stability. The use of the Manning algorithm greatly improved the reproduction of the observed distribution of suspended concentration both in the vertical and horizontal directions compared to the other simulations. During the 1-D assessments, the Manning-settling model demonstrated flexibility in adapting to a wide range of estuarine environmental conditions (i.e. shear stress and concentration), specifically for applied modelling purposes.     

Contribution of primary producers to mercury trophic transfer in estuarine ecosystems: Possible effects of eutrophication

There is an ongoing eutrophication process in the Ria de Aveiro coastal lagoon (Portugal), with progressive replacement of rooted primary producers for macroalgae. Taking advantage of a well-defined environmental contamination gradient, we studied mercury accumulation and distribution in the aboveground and the belowground biomass of several salt marsh plants, including the seagrass species Zostera noltii and the dominant green macroalgal species Enteromorpha sp. The results of these experiments were then placed into the context of the estuarine mercury cycle and transport from the contaminated area.All salt marsh plants accumulated mercury in the root system, with Halimione portulacoides showing the highest levels, with up to 1.3 mg kg⁻¹ observed in the most contaminated area. Belowground/aboveground ratios were generally below 0.4, suggesting that salt marsh plants are efficient immobilizers and retainers of mercury agents. Moreover, due to their sediment accretion capacities, salt marsh plants seem to play an important role in the sequestration of mercury in estuarine sediments.Seagrasses, on the other hand, accumulated considerable amounts of mercury in the aboveground biomass with belowground/aboveground ratios reaching as high as 1.4. These results may be due to their different routes of uptake (roots and foliar uptake) which suggests that seagrass meadows can be an important agent in the export of mercury from contaminated areas, considering the high aboveground biomass replacement rates.Rooted macrophytes accumulate less mercury in their aboveground biomass than macroalgae. The change of primary producer dominance due to eutrophication can originate a 4- to 5-fold increase in primary producer associated mercury. This mercury would be available for export, making it bioavailable to estuarine food webs, which stresses the need to reverse the current eutrophic status of estuarine systems.     

Critical erosion profiles in macro-tidal estuary sediments: Implications for the stability of intertidal mud and the slope of mud banks

Vertical profiles of the critical erosion threshold (τ_crit) in sediment have been measured at 11 stations along the axis of the Tamar Estuary and at a single station in a tributary of the Tamar at St. John's Ford. The τ_crit of surface sediment increased from 0.04 Pa in the upper, brackish estuary to 0.09 Pa in the lower estuary. In the upper estuary τ_crit only increased slightly with depth whereas in the marine estuary τ_crit increased rapidly from 0.09 Pa at the surface to 0.25 Pa at 15 cm below the sediment surface. The results showed that the relationship between τ_crit and bulk density (ρ_b) obtained previously for surface sediment was also applicable to sediments from depths of 10–15 cm and probably deeper. Profiles of ρ_b were measured to depths of 70 cm using a corer. In the lower (marine) estuary ρ_b increased with depth in the sediment from 1580 kg m⁻³ at the surface to 1720 kg m⁻³ at 70 cm. In the upper estuary ρ_b values were lower at 1170–1200 kg m⁻³ and profiles were almost homogeneous indicating that consolidation was not occurring. The mid-estuary was transitional between these two situations. These results are consistent with the seasonal accumulation and loss of ‘mobile’ sediment observed previously in the upper estuary with changes in river flow, and with the apparent stability of intertidal mud in the lower marine estuary deduced from historical bathymetric survey records. The slopes of the intertidal mud banks ranged from 1–2% in the lower estuary to 20–25% in mid-estuary but, instead of continuing to increase in steepness towards the head as the estuary became narrower, the measured slopes actually decreased. It is speculated that the lack of consolidation through continual mobilisation and settlement cycles combined with an increase in silt content in the upper estuary resulted in sediment that lacked the mechanical strength to maintain steep slopes.