Lipids in selected abyssal benthopelagic animals: links to the epipelagic zone?

A detailed study of the lipids of selected zooplankton species and scavenging amphipods in the near-bottom water layer (15–100 m above bottom, mab) was carried out at the BENGAL site in late summer 1998. Copepoda were the main contributors to the zooplankton, comprising 75% of the total abundance, followed by Ostracoda and Chaetognatha. Calanoid copepods of the family Metridinidae were predominant and accounted for more than 50% of all copepods.Two types of storage lipids were distinguished: triacylglycerols and wax esters. Ostracoda and the polychaete Vanadis sp. stored exclusively triacylglycerols whilst the bulk of the Copepoda accumulated wax esters, with the exception of the family Aetideidae. In the amphipods both lipid classes were found: Eurythenes gryllus stored wax esters and Paralicella spp. and Orchomene sp. triacylglycerols.The fatty acid composition was characterized by a high level of monounsaturated 18:1 (n—9), which is described as characteristic for animals living in the deeper layers of the water column, and to a lesser degree by 16:1 (n—7) and 20:5 (n—3), which are typical components of diatom lipids, and 22:6 (n—3), typical of dinoflagellates. The ratio of 18:1 (n—9):18:1 (n—7) fatty acids was between 5 and 10 in the copepods and indicates a carnivorous/omnivorous feeding behaviour in this group, whereas the higher ratios of 8–18 in the amphipods confirm their necrophagy. The fatty alcohols of the animals storing wax esters were dominated by the monounsaturated isomers 18:1 (n—9) and 18:1 (n—7).The predominance of wax esters as storage lipids in the deep-sea copepods indicates a strong seasonality in the availability of food. This is supported by the high levels of 16:1 (n—7), 20:5 (n—3) and 22:6 (n—3) fatty acids, which point to there being a direct link between the surface primary production and deep-sea copepods, probably via the rapid deposition of phytodetritus.     

Zooplankton associated with the oxygen minimum zone system in the northern upwelling region of Chile during March 2000

Zooplankton in the coastal upwelling region off northern Chile may play a significant biogeochemical role by promoting carbon flux into the subsurface OMZ (oxygen minimum zone). This work identifies the dominant zooplankton species inhabiting the area influenced by the OMZ in March 2000 off Iquique (20°S, northern Chile). Abundance and vertical distribution studies revealed 17 copepod and 9 euphausiid species distributed between the surface and 600 m at four stations sampled both by day and by night. Some abundant species remained in the well-oxygenated upper layer (30 m), with no evidence of diel vertical migration, apparently restricted by a shallow (40–60 m) oxycline. Other species, however, were found closely associated with the OMZ. The large-sized copepod Eucalanus inermis was found below the oxycline and performed diel vertical migrations into the OMZ, whereas the very abundant Euphausia mucronata performed extensive diel vertical migrations between the surface waters and the core of the OMZ (200 m), even crossing it. A complete assessment of copepods and euphausiids revealed that the whole sampled water column (0–600 m) is occupied by distinct species having well-defined habitats, some of them within the OMZ. Ontogenetic migrations were evident in Eucalanidae and E. mucronata. Estimates of species biomass showed a substantial (>75% of total zooplankton biomass) daily exchange of C between the photic layer and the OMZ. Both E. inermis and E. mucronata can actively exchange about 37.8 g C m⁻² d⁻¹ between the upper well-oxygenated (0–60 m) layer and the deeper (60–600 m) OMZ layer. This migrant biomass may contribute about 7.2 g C m⁻² d⁻¹ to the OMZ system through respiration, mortality, and production of fecal pellets within the OMZ. This movement of zooplankton in and out of the OMZ, mainly as a result of the migratory behavior of E. mucronata, suggests a very efficient mechanism for introducing large amounts of freshly produced carbon into the OMZ system and should, therefore, be considered when establishing C budgets for coastal upwelling systems.     

Effects of mesoscale phytoplankton variability on the copepods Neocalanus flemingeri and N. plumchrus in the coastal Gulf of Alaska

The copepods Neocalanus flemingeri and N. plumchrus are major components of the mesozooplankton on the shelf of the Gulf of Alaska, where they feed, grow and develop during April–June, the period encompassing the spring phytoplankton bloom. Satellite imagery indicates high mesoscale variability in phytoplankton concentration during this time. Because copepod ingestion is related to food concentration, we hypothesized that phytoplankton ingestion by N. flemingeri and N. plumchrus would vary in response to mesoscale variability of phytoplankton. We proposed that copepods on the inner shelf, where the phytoplankton bloom is most pronounced, would be larger and have more lipid stores than animals collected from the outer shelf, where phytoplankton concentrations are typically low. Shipboard feeding experiments with both copepods were done in spring of 2001 and 2003 using natural water as food medium. Chlorophyll concentration ranged widely, between 0.32 and 11.44 μg l⁻¹ and ingestion rates varied accordingly, between 6.0 and 627.0 ng chl cop⁻¹ d⁻¹. At chlorophyll concentrations<0.50 μg l⁻¹, ingestion is always low, <40 ng cop⁻¹ d⁻¹. Intermediate ingestion rates were observed at chlorophyll concentrations between 0.5 and 1.5 μg l⁻¹, and maximum rates at chlorophyll concentrations>1.5 μg l⁻¹. Application of these feeding rates to the phytoplankton distribution on the shelf allowed locations and time periods of low, intermediate and high daily feeding to be calculated for 2001 and 2003. A detailed cross-shelf survey of body size and lipid store in these copepods, however, indicated they were indistinguishable regardless of collection site. Although the daily ingestion of phytoplankton by N. flemingeri and N. plumchrus varied widely because of mesoscale variability in phytoplankton, these daily differences did not result in differences in final body size or lipid storage of these copepods. These copepods efficiently dealt with small and mesoscale variations in their food environment such that mesoscale structure in phytoplankton did not affect their final body size.     

Factors influencing particulate lipid production in the East Atlantic Ocean

Extensive analyses of particulate lipids and lipid classes were conducted to gain insight into lipid production and related factors along the biogeochemical provinces of the Eastern Atlantic Ocean. Data are supported by particulate organic carbon (POC), chlorophyll a (Chl a), phaeopigments, Chl a concentrations and carbon content of eukaryotic micro-, nano- and picophytoplankton, including cell abundances for the latter two and for cyanobacteria and prokaryotic heterotrophs. We focused on the productive ocean surface (2 m depth and deep Chl a maximum (DCM)). Samples from the deep ocean provided information about the relative reactivity and preservation potential of particular lipid classes. Surface and DCM particulate lipid concentrations (3.5–29.4 μg L⁻¹) were higher than in samples from deep waters (3.2–9.3 μg L⁻¹) where an increased contribution to the POC pool was observed. The highest lipid concentrations were measured in high latitude temperate waters and in the North Atlantic Tropical Gyral Province (13–25°N). Factors responsible for the enhanced lipid synthesis in the eastern Atlantic appeared to be phytoplankton size (micro, nano, pico) and the low nutrient status with microphytoplankton having the most expressed influence in the surface and eukaryotic nano- and picophytoplankton in the DCM layer. Higher lipid to Chl a ratios suggest enhanced lipid biosynthesis in the nutrient poorer regions. The various lipid classes pointed to possible mechanisms of phytoplankton adaptation to the nutritional conditions. Thus, it is likely that adaptation comprises the replacement of membrane phospholipids by non-phosphorus containing glycolipids under low phosphorus conditions. The qualitative and quantitative lipid compositions revealed that phospholipids were the most degradable lipids, and their occurrence decreased with increasing depth. In contrast, wax esters, possibly originating from zooplankton, survived downward transport probably due to the fast sinking rate of particles (fecal pellets). The important contribution of glycolipids in deep waters reflected their relatively stable nature and degradation resistance. A lipid-based proxy for the lipid degradative state (Lipolysis Index) suggests that many lipid classes were quite resistant to degradation even in the deep ocean.     

Meiofaunal distributions on the Peru margin:: relationship to oxygen and organic matter availability

A quantitative study of metazoan meiofauna was carried out on bathyal sediments (305, 562, 830 and 1210 m) along a transect within and beneath the oxygen minimum zone (OMZ) in the southeastern Pacific off Callao, Peru (12°S). Meiobenthos densities ranged from 1517 (upper slope, middle of OMZ) to 440–548 ind. 10 cm⁻² (lower slope stations, beneath the OMZ). Nematodes were the numerically dominant meiofaunal taxon at every station, followed by copepods and nauplii. Increasing bottom-water oxygen concentration and decreasing organic matter availability downslope were correlated with observed changes in meiofaunal abundance. The 300-m site, located in the middle of the OMZ, differed significantly in meiofaunal abundance, dominance, and in vertical distribution pattern from the deeper sites. At 305 m, nematodes amounted to over 99% of total meiofauna; about 70% of nematodes were found in the 2–5 cm interval. At the deeper sites, about 50% were restricted to the top 1 cm. The importance of copepods and nauplii increased consistently with depth, reaching ∼12% of the total meiofauna at the deepest site. The observation of high nematode abundances at oxygen concentrations <0.02 ml l⁻¹ supports the hypothesis that densities are enhanced by an indirect positive effect of low oxygen involving (a) reduction of predators and competitors and (b) preservation of organic matter leading to high food availability and quality. Food input and quality, represented here by chloroplastic pigment equivalents (CPE) and sedimentary labile organic compounds (protein, carbohydrates and lipids), were strongly, positively correlated with nematode abundance. By way of contrast, oxygen exhibited a strong negative correlation, overriding food availability, with abundance of other meiofauna such as copepods and nauplii. These taxa were absent at the 300-m site. The high correlation of labile organic matter (C-LOM, sum of carbon contents in lipids, proteins and carbohydrates) with CPE (Pearson's r=0.99, p<0.01) suggests that most of the sedimentary organic material sampled was of phytodetrital origin. The fraction of sediment organic carbon potentially available to benthic heterotrophs, measured as C-LOM/Total organic carbon, was on average 17% at all stations. Thus, a residual, refractory fraction, constitutes the major portion of organic matter at the studied bathyal sites.     

Zooplankton distribution across Fram Strait in autumn: Are small copepods and protozooplankton important?

We investigated zooplankton distribution in September 2006/2007 at eight stations across Fram Strait in contrasting water masses ranging from cold Polar water to warm Atlantic water. Our main objectives were: (1) to describe the plankton community in the upper 200 m during autumn, and (2) to investigate the importance of small-sized copepods and protozooplankton in an arctic ecosystem when the majority of the large Calanus species had entered diapause. We sampled both with a WP-2 net and Go-Flo bottle and show that small copepods <1 mm are significantly undersampled using a WP-2 net with 90 μm mesh.Small copepods and protozooplankton made a significant contribution both in terms of abundance and total zooplankton biomass at all stations in September, when the large calanoid copepods had left the upper 200 m. The dominating group in the upper 60 m at all stations was Oithona spp. nauplii and their daily estimated grazing potential on the <10 μm phytoplankton ranged from 0.1% to 82% of the standing stock. Both Oithona copepodites and nauplii biomass showed a significantly positive relation with temperature, but not with potential food. Heterotrophic protozooplankton, on the other hand, were most likely bottom-up regulated by the availability of phytoplankton <10 μm. We hypothesise that Oithona nauplii and protozooplankton compete for food and conclude that there was a strong link between the zooplankton community and the microbial food web in Fram Strait.     

Fatty acid composition of surface sediments in the subtropical Pearl River estuary and adjacent shelf,Southern China

Surface sediments (10 cm) of the subtropical Pearl River estuary and adjacent shelf, Southern China were collected. Fatty acids and compound-specific carbon isotopic analyses were determined to infer their sources and biogeochemical cycle of this lipid in the subtropical Pearl River estuary and adjacent northern South China Sea (SCS). The total concentrations of fatty acids ranged from ∼1.28 to ∼42.25 μg g⁻¹ dry weight. The levels of polyunsaturated fatty acids (PUFA) were low (0.2–4.8% of total fatty acids), suggesting that fatty acids derived from algae were effectively recycled during the whole settling and depositing process. Bacterial fatty acids were significantly high and terrigenous fatty acids were low in the sediments. Principal component analysis (PCA) of the data also indicates that a clear separation of the biogeochemical sources can be seen. The δ¹³C values of bacterial fatty acids, i.e., i/aiC₁₅ (−22.9‰ to −29.4‰) suggest that bacteria within the sediments mainly utilize a labile pool of organic matter derived from algae for their growth in the subtropical Pearl River estuary system.     

Vertical changes in abundance,biomass and community structure of copepods down to 3000 m in the southern Bering Sea

Vertical changes in abundance, biomass and community structure of copepods down to 3000 m depth were studied at a single station of the Aleutian Basin of the Bering Sea (53°28′N, 177°00′W, depth 3779 m) on the 14th June 2006. Both abundance and biomass of copepods were greatest near the surface layer and decreased with increase in depth. Abundance and biomass of copepods integrated over 0–3000 m were 1,390,000 inds. m^?2 and 5056 mg C m^?2, respectively. Copepod carcasses occurred throughout the layer, and the carcass:living specimen ratio was the greatest in the oxygen minimum layer (750–100 m, the ratio was 2.3). A total of 72 calanoid copepod species belonging to 34 genera and 15 families occurred in the 0–3000 m water column (Cyclopoida, Harpacticoida and Poecilostomatoida were not identified to species level). Cluster analysis separated calanoid copepod communities into 5 groups (A–E). Each group was separated by depth, and the depth range of each group was at 0–75 m (A), 75–500 m (B), 500–750 m (C), 750–1500 m (D) and 1500–3000 m (E). Copepods were divided into four types based on the feeding pattern: suspension feeders, suspension feeders in diapause, detritivores and carnivores. In terms of abundance the most dominant group was suspension feeders (mainly Cyclopoida) in the epipelagic zone, and detritivores (mainly Poecilostomatoida) were dominant in the meso- and bathypelagic zones. In terms of biomass, suspension feeders in diapause (calanoid copepods Neocalanus spp. and Eucalanus bungii) were the major component (ca. 10–45%), especially in the 250–3000 m depth. These results are compared with the previous studies in the same region and that down to greater depths in the worldwide oceans.     

Diel variations of the bathymetric distribution of zooplankton groups and biomass in Cap-Ferret Canyon,France

The bathymetric distribution, abundance and diel vertical migrations (DVM) of zooplankton were investigated along the axis of the Cap-Ferret Canyon (Bay of Biscay, French Atlantic coast) by a consecutive series of synchronous net hauls that sampled the whole water column (0–2000 m in depth) during a diel cycle. The distribution of appendicularians (maximum 189 individuals m⁻³), cladocerans (maximum 287 individuals m⁻³), copepods (copepods<4 mm, maximum 773 individuals m⁻³, copepods>4 mm, maximum 13 individuals m⁻³), ostracods (maximum 8 individuals m⁻³), siphonophores (maximum >2 individuals m⁻³) and peracarids (maximum >600 individuals 1000 m⁻³) were analysed and represented by isoline diagrams. The biomass of total zooplankton (maximum 18419 μg C m⁻³, 3780 μg N m⁻³) and large copepods (>4 mm maximum 2256 μg C m⁻³, 425 μg N m⁻³) also were determined. Vertical migration was absent or affected only the epipelagic zone for appendicularians, cladocerans, small copepods and siphonophores. Average amplitude of vertical migration was about 400–500 m for ostracods, some hyperiids and mysids, and large copepods, which were often present in the epipelagic, mesopelagic, and bathypelagic zones. Large copepods can constitute more than 80% of the biomass corresponding to total zooplankton. They may play an important role in the active vertical transfer of carbon and nitrogen.     

The copepod Tigriopus japonicus genomic DNA information (574 Mb) and molecular anatomy

The intertidal copepod, Tigriopus japonicus, has been recognized as a promising model species for marine environmental genomics. To obtain extensive genomic DNA sequences from this species, we sequenced genomic DNA from adult copepods using genomic sequencers GS-FLX and GS-FLX-Titanium and attained 1,914,995 reads (average read length 299.8 bp) including 574.2 Mb of genomic DNA information. After subjecting them to assembly, we acquired 193,642 contigs (total contigs length 129.7 Mb), and finally were able to obtain 10,894 unigenes (E-value > 0.1; length > 200 bp) containing 33,081,455 bp after a nonredundant (NR) blast search. In this paper, we summarize the genomic DNA sequences of T. japonicus and discuss its potential use in environmental genomics and ecotoxicological studies for uncovering mechanisms of environmental stresses and chemical toxicities to marine crustaceans.     

High-frequency fluxes of labile compounds in the central Ligurian Sea,northwestern Mediterranean

Sinking particles were collected every 4 h with drifting sediment traps deployed at 200 m depth in May 1995 in a 1-D vertical system during the DYNAPROC observations in the northwestern Mediterranean sea. POC, proteins, glucosamine and lipid classes were used as indicators of the intensity and quality of the particle flux. The roles of day/night cycle and wind on the particle flux were examined. The transient regime of production from late spring bloom to pre-oligotrophy determined the flux intensity and quality. POC fluxes decreased from, on average, 34 to 11 mg m⁻² d⁻¹, representing 6–14% of the primary production under late spring bloom conditions to 1–2% under pre-oligotrophic conditions. Total protein and chloroplast lipid fluxes correlated with POC and reflected the input of algal biomass into the traps. As the season proceeded, changes in the biochemical composition of the exported material were observed. The C/N ratio rose from 7.8 to 12. Increases of serine (10–28% of total proteins), total lipids (7–9 to 14–28% of POC) and reserve lipids (1–5 to 5–22% of total lipids) were noticeable, whereas total protein content in POC decreased (20–27 to 18–7%). N-acetyl glucosamine, a tracer of fecal pellet flux, showed that zooplankton grazing was a major vector of downward export during the decaying bloom. Against this background pattern, episodic events specifically increased the flux, modifying the quality and the settling velocity of particles. Day/night signals in biotracers (POC, N-acetyl glucosamine, protein and chloroplast lipids) showed that zooplankton migrations were responsible for sedimentation of fresh material through fast sinking particles (V=170–180 m d⁻¹) at night. Periodic signatures of re-processed material (high lipolysis and bacterial biomass indices) suggested that other zooplankton fecal pellets or small aggregates, probably of lower settling velocities (V<170 m d⁻¹), contributed to the flux during calm periods. At the beginning of the experiment, during the development of a prymnesiophyte bloom in the upper layers, the sterol signal with no periodicity enabled us to estimate high particle settling velocities (⩾600 m d⁻¹) likely related to large aggregate formation. A wind event increased biotracer fluxes (POC, protein, chloroplast lipids). The rapid transmission of surface signals through extremely fast sinking particles could be a general feature of particle fluxes in marine areas unaffected by horizontal advection.     

The distribution and vertical flux of fecal pellets from large zooplankton in Monterey bay and coastal California

We sampled zooplankton and fecal pellets in the upper 200 m of Monterey Bay and nearby coastal regions in California, USA. On several occasions, we observed high concentrations of large pellets that appeared to be produced during night-time by dielly migrating euphausiids. High concentrations of pellets were found in near-surface waters only when euphausiids co-occurred with high concentrations of large (>10 μm) phytoplankton. Peak concentrations of pellets at mid-depth (100 or 150 m) during the day were consistent with the calculated sinking speeds of pellets produced near the surface at night. At these high flux locations (HI group), pellet concentrations declined below mid-depth. In contrast, at locations where the phytoplankton assemblage was dominated by small phytoplankton cells (<10 μm), pellet production and flux were low (LO group) whether or not euphausiid populations were high. Protozooplankton concentrations did not affect this pattern. We concluded that the day and night differences in pellet concentration and flux in the HI profiles were mostly due to sinking of dielly-pulsed inputs in the surface layer, and that small zooplankton (Oithona, Oncaea), heterotrophic dinoflagellates, and bacterial activity probably caused some pellet degradation or consumption below 100 m. We estimated that consumption of sinking pellets by large copepods was insignificant. High fluxes of pellets were episodic because they required both high concentrations of large phytoplankton and large stocks of euphausiids. Under these conditions, flux events overwhelmed retention mechanisms, resulting in large exports of organic matter from the upper 200 m.     

Mesozooplankton in the Arctic Ocean in summer

The biomass, species and chemical composition of the mesozooplankton and their impact on lower food levels were estimated along a transect across the Arctic Ocean. Mesozooplankton biomass in the upper 200 m of the water column was significantly higher (19–42 mg DW m^-3) than has previously been reported for the Arctic Ocean, and it reached a maximum at ca. 87°N in the Amundsen Basin. The lowest values were recorded in the Chukchi Sea and Nansen Basin, where ice cover was lower (50–80%) than in the central Arctic Ocean. In the deeper strata (200–500 m) of the Canadian and Eurasian Basins, the biomass was always much lower (4.35–16.44 mg DW m^-3). The C/N (g/g) ratio for the mesozooplankton population was high (6.5–8.5) but within the documented range. These high values (when compared to 4.5 at lower latitudes) may be explained by the high lipid content. Mesozooplankton accounted for approximately 40% of the total particulate organic carbon in the upper 100 m of the water column. Mesozooplankton species composition was homogeneous along the transect, consisting mainly of copepods (70–90% of the total number). It was dominated by four large copepod species (Calanus hyperboreus, C. glacialis, C. finmarchicus and Metridia longa), which together accounted for more than 80% of the total biomass. According to measurements of gut pigment and gut turnover rates, the mesozooplankton on average ingested between 6 and 30% of their body carbon per day as phytoplankton. Microzooplankton may have provided an additional source of energy for the mesozooplankton community. These data emphasize the importance of mesozooplankton in the arctic food web and reinforce the idea that the Arctic Ocean should no longer be considered to be a “biological desert”.     

Temporal changes (1989–1999) in deep-sea metazoan meiofaunal assemblages on the Porcupine Abyssal Plain,NE Atlantic

Trends among major metazoan meiofaunal taxa were investigated based on 56 deployments of a multicorer at 10 time points over a period of 11 years (1989–1999) at the Porcupine Abyssal Plain Sustained Observatory site (PAP-SO: 48°50′N 16°30′W, 4850 m depth). This area is characterised by a strong seasonality in the deposition of organic matter to the seafloor and by the massive increase in the density of holothurian species since 1996, the so-called ‘Amperima event’. Total meiofaunal densities ranged from 346 to 1074 ind.×10 cm⁻² and showed a significant increase with time when time was represented by cruises, years and the ‘Amperima period’ (1996–1999) vs. the pre-Amperima period (1989–1994). This pattern was driven mainly by the nematodes, which were the dominant taxon (∼90% of total abundance). The third most abundant group, the polychaetes, also increased significantly in abundance over the time series, while the ostracods showed a significant decrease. Most other taxa, including the second-ranked group, the copepods (harpacticoids and nauplii), did not exhibit significant temporal changes in abundance. Ordination of taxon composition showed a shift from the pre-Amperima to the Amperima periods, a trend supported by the significant correlation between the x-ordinate and time. The majority (52–75%) of meiofaunal animals inhabited the top 2 cm of the 5 cm sediment cores analysed. There were significant increases in the proportion of total meiofauna, nematodes and copepods (but not polychaetes) inhabiting the 0–1 cm layer over time (represented by cruises) and between the pre-Amperima and Amperima periods in the case of copepods and polychaetes. During the intensively sampled period (1996–1997), there were indications of seasonal changes in the vertical distribution patterns of total meiofauna and nematodes within the sediment. We discuss the potential link between temporal variations in organic matter flux to the seafloor and meiofaunal populations, considering both qualitative and quantitative changes in fluxes and how they may be linked to climate variations.     

Biochemical implications and geochemical significance of novel phospholipids of the extremely barophilic bacteria from the Marianas Trench at 11,000 m

The membrane phospholipids of two barophilic bacteria, DB21MT-2 and DB21MT-5, isolated from sediments from the Marianas Trench at 11,000 m were structurally characterized and quantitatively determined by liquid chromatography/electrospray ionization/mass spectrometry (LC/ESI/MS). Phospholipids detected in the barophiles were distributed in five different classes: phosphatidylglycerol (PG), phosphatidylinositol (PI), phosphatidylcholine (PC), diphosphatidylglycerol (DPG), and phosphatidylethanolamine (PE) and its methylated forms phosphatidylmethylethanolamine (PME) and phosphatidyldimethylethanolamine (PDME). Concentrations of phospholipids/phospholipid groups range from 5.3 to 4.583 μg/g (dry weight). A unique aspect of the phospholipid profiles of the barophilic bacteria was the wide distribution of polyunsaturated fatty acids 20 : 5 (in DB21MT-2) and 22 : 6 (in both DB21MT-5 and DB1MT-2) on the sn-1 and mostly on the sn-2 position of the phospholipids. The results suggest that the adaptation of the barophiles to low temperature and high hydrostatic pressure influenced the synthesis of phospholipids containing polyunsaturated fatty acids. It was also observed that the polyunsaturated fatty acids were associated with almost every phosphatidylglycerol (PG) molecule. Presumably, the larger head group of PG would be expected to cause greater disruption in acyl chain packing within the membrane bilayer and thereby lower the transition temperature in response to the additive effects of low temperature and high pressure. The detection of phospholipids with polyunsaturated fatty acids also has important geochemical implications for paleoenvironment reconstruction and for determining the surface water biological productivity of the ocean. It seems that psychrophilic and barophilic bacteria may be major sources of polyunsaturated fatty acids to the deep-sea sediments, given the fact that the vertical flux of polyunsaturated fatty acids from surface water plankton decreased rapidly with depth.     

First biomarker evidence for methane oxidation at cold seeps in the Southeast Atlantic (REGAB pockmark)

Sediment cores from the REGAB pockmark, an active cold seep area in the southeast Atlantic, were analysed for their lipid biomarker distribution and associated stable carbon isotopic composition. Substantial amounts of diagnostic archaeal lipids were found, consisting mainly of archaeol, sn-2 hydroxyarchaeol and crocetane. All archaeal lipids were profoundly depleted in ¹³C with δ¹³C values as low as −133‰. Concurrently, abundant monoalkylglycerolethers (MAGE), assigned to sulphate-reducing bacteria, were identified and showed strong ¹³C-depletions (δ¹³C between −86‰ and −95‰). The structural and isotopic patterns of these microbial lipids provided compelling evidence for anaerobic oxidation of methane (AOM) occurring in REGAB sediments, mediated by archaea and sulphate reducing bacteria. Lipid fingerprints indicated that anaerobic methanotrophic archaea (ANME-2) and sulphate-reducing bacteria from the Desulfosarcina/Desulfococcus cluster are the dominant AOM assemblages. Depth profiles implied that highest AOM takes place below the upper 2 cm, mainly in the 6–12 cm depth interval. Significant abundances of ¹³C-depleted diploptene and 4α-methylsterols were found as well, inferring that aerobic methanotrophy occurs in the surface sediment interval. This first biomarker study at the recently investigated cold seeps in the SE Atlantic expand on existing work on AOM settings and add new evidence for aerobic and anaerobic methanotrophic communities occurring in close vicinity.     

Mesoscale distribution and advection of overwintering Calanus finmarchicus off the shelf of northern Norway

Data collected on a cruise in January 2008, using a laser optical plankton counter, conductivity–temperature–depth sensors, and a lowered acoustic Doppler current profiler, was used to study the mesoscale distribution and advection of overwintering Calanus finmarchicus in its deep water winter habitat off the shelf of northern Norway. The overwintering animals were generally located immediately below the Atlantic Water (AW) in Arctic Intermediate Water (AIW), in the 600–1200 m depth range. The depth of the interface between AW and AIW varied considerably in the area and this was clearly reflected in the C. finmarchicus distribution. Maximum abundance varied from about 80 ind m^?3 to more than 200 ind m^?3 at the different stations. Current measurements showed the richness of mesoscazle eddies, with speeds exceeding 70 cm s^?1 at the surface and rapidly decreasing with depth. In the main overwintering layer the eddy features were also clearly seen, but with speeds generally below 20 cm s^?1. C. finmarchicus were found in the whole survey area, but they were not homogeneously distributed. Advection of the copepods resulted in relatively high local rates of change in overwintering C. finmarchicus abundance with mean value of 8% per day in the area. It is clear that mesoscale physical processes greatly contribute to the variability in the abundance of overwintering C. finmarchicus off the shelf of northern Norway. The collected data are also a valuable addition to the generally sparse datasets on the C. finmarchicus winter distribution and the role of the Lofoten basin in the large scale system is also discussed.     

Clearance rates of ephyrae and small medusae of the common jellyfish Aurelia aurita offered different types of prey

Prey selection and knowledge of the amounts of water processed by the early stages of the common jellyfish Aurelia aurita may at certain times of the year be crucial for understanding the plankton dynamics in marine ecosystems with mass occurrences of this jellyfish. In the present study we used two different methods (“clearance method” and “ingestion-rate method”) to estimate the amount of water cleared per unit of time of different types and sizes of prey organisms offered to A. aurita ephyrae and small medusae. The mean clearance rates of medusae, estimated with Artemia sp. nauplii as prey by both methods, agreed well, namely 3.8 ± 1.4 l h^? 1 by the clearance method and 3.2 ± 1.1 l h^? 1 by the ingestion-rate method. Both methods showed that copepods (nauplii and adults) and mussel veligers are captured with considerably lower efficiency, 22 to 37% and 14 to 30%, respectively, than Artemia salina nauplii. By contrast, the water processing rates of ephyrae measured by the clearance method with A. salina nauplii as prey were 3 to 5 times lower than those measured by the ingestion-rate method. This indicates that the prerequisite of full mixing for using the clearance method may not have been fulfilled in the ephyrae experiments. The study demonstrates that the predation impact of the young stages of A. aurita is strongly dependent on its developmental stage (ephyra versus medusa), and the types and sizes of prey organisms. The estimated prey-digestion time of 1.3 h in a steady-state feeding experiment with constant prey concentration supports the reliability of the ingestion-rate method, which eliminates the negative “container effects” of the clearance method, and it seems to be useful in future jellyfish studies, especially on small species/younger stages in which both type and number of prey can be easily and precisely assessed.     

Zooplankton inside an Arctic Ocean cold-core eddy: Probable origin and fate

In September 2004, an extensive survey of a cold-core eddy in the Canada Basin, western Arctic was carried out with high-horizontal-resolution physical and chemical sampling and lower-horizontal-resolution biological sampling. The eddy was located over the continental slope north of the Chukchi Shelf and had a radius of ∼8 km. Its core was centered at a depth of ∼160 m. Water mass characteristics and the presence of copepods from the North Pacific Ocean (Neocalanus flemingeri and Metridia pacifica) demonstrated that the core contained water of Pacific origin. Vertical distributions of zooplankton were associated with the physical structure of the water column. For most taxa, concentrations in the eddy core were elevated compared with those in similar density water in the surrounding Basin. Based on tracer-age estimates and previous observations of eddy formation, the eddy is believed to have been formed during the previous spring/summer from the Chukchi shelfbreak jet. Surprisingly, the eddy also contained elevated abundances of Arctic-origin copepods (Metridia longa and Calanus glacialis). Analysis of a shelf–basin transect occupied in the region in August 2004 showed that these species were present in high abundances in relatively shallow water (50 m) inshore of the shelfbreak due to upwelling of deeper basin water, and copepods, onto the shelf in response to easterly winds. If the formation of the observed eddy occurred during, or shortly after, a period of such winds, upwelled Arctic-origin copepods on the shelf might have been entrained into the feature. Our observations suggest that formation and subsequent migration of such eddies may provide a mechanism for transporting zooplankton from the Chukchi Shelf into the interior Canada Basin. The periodic input of high abundances of zooplankton from productive shelf areas could affect food webs in the less productive basin.     

Calanoid copepods assemblages in Pearl River Estuary of China in summer: Relationships between species distribution and environmental variables

To study the relationships between species distribution and environmental variables, calanoid copepods were classified and enumerated, and environmental variables were analyzed along 91 sites of the Pearl River Estuary (China) and adjacent waters. The 91 sites were divided into 3 groups based on surface salinity: the Inner area had salinity level below 10‰ and was mostly located in the Pearl River Estuary, the Coastal area had salinity between 10‰ and 32‰ and was almost located along the coastline, while the Offshore area had salinity level higher than 32‰ and was mainly located in the open area. Indicator Species Analysis was conducted to identify the indicator species within each group from among all calanoid copepods taxa. We found that the Inner area was characterized by Acartiella sinensis, Pseudodiaptomus poplesia and Pseudodiaptomus inopinus, the coastal area was characterized by Temora turbinata and Subeucalanus subcrassus, and the Offshore area was characterized by Paracandacia truncata, Subeucalanus subtenuis, Euchaeta rimana, Pareucalanus attenuatus, Rhincalanus cornutus, Cosmocalanus darwini, Centropages gracilis, Undinula vulgaris, Nannocalanus minor and Paraeuchaeta russelli. Canonical Correspondence Analysis (CCA) was used to identify relevant biotic and abiotic parameters that can best explain the distribution of calanoid copepods. CCA showed that during the summer of 2006, salinity, nutrient variables, especially SiO₃–Si, NO₃–N and DTN, Depth and Chl a were the environmental variables that strongly impacted the distribution and community structure of calanoid copepods.