Genetic diversity and structure of natural and transplanted eelgrass populations in the Chesapeake and Chincoteague Bays

The objective of this study was to gain baseline population data on the genetic diversity and differentiation of eelgrass (Zostera marïna L.) populations in the Chesapeake and Chincoteague bays. Natural and transplanted eelgrass beds were compared using starch gel electrophoresis of allozymes. Transplanted eelgrass beds were not reduced in genetic diversity compared with natural beds. Inbreeding coefficients (F_IS) indicated that transplanted eelgrass beds had theoretically higher levels of outcrossing than natural beds, suggesting the significance of use of seeds as donor material and of seedling recruitment following transplantation diebacks. Natural populations exhibited very great genetic structure (F_ST=0.335), but transplanted beds were genetically similar to the donor bed and each other. Genetic diversity was lowest in Chincoteague Bay, reflecting recent restoration history since the 1930s wasting disease and geographical isolation from other east coast populations. These data provide a basis for developing a management plan for conserving eelgrass genetic diversity in the Chesapeake Bay and for guiding estuary-wide restoration efforts. It will be important to recognize that the natural genetic diversity of eelgrass in the estuary is distributed among various populations and is not well represented by single populations.     

Delaware Bay and Chesapeake Bay populations of the horseshoe crabLimulus polyphemus are genetically distinct

The Delaware Bay contains the world’s largest population of horseshoe crabs, which constitute an ecologically significant component of this estuarine ecosystem. The North Atlantic speciesLimulus polyphemus has an extensive geographical distribution, ranging from New England to the Gulf of Mexico. Recent assessments of the Delaware Bay population based on beach spawning and trawling data have suggested a considerable decrease in the number of adult animals since 1990. Considerable debate has centered on the accuracy of these estimates and their impact on marine fisheries management planning. Compounding this problem is the lack of information concerning the genetic structure of Atlantic horseshoe crab populations. This study assessed patterns of genetic variation within and between the horseshoe crab populations of Delaware Bay and Chesapeake Bay, using both Random Amplification of Polymorphic DNA (RAPD) and DNA sequence analysis of the mitochondrial cytochrome oxidase I gene (COI). We examined 41 animals from Delaware Bay and 14 animals from the eastern shore of Chesapeake Bay. To provide high quality, uncontaminated genomic DNA for RAPD analysis, DNA was isolated from hemocytes by direct cardiac puncture, purified by spin column chromatography, and quantified by agarose gel electrophoresis. RAPD fingerprints revealed a relative paucity of polymorphic fragments, with generally homogeneous banding patterns both within and between populations. DNA sequence analysis of 515 bases of the 5′ portion of the mitochondrial COI gene showed haplotype diversity in the Chesapeake Bay sample to be significantly higher than in the Delaware Bay sample, despite the larger size of the latter. Haplotype analysis indicates minimal contemporary gene flow between Delaware Bay and Chesapeake Bay crab populations, and further suggests that the Delaware Bay population is recovering from a recent population decline.     

Quantifying eelgrass habitat loss in relation to housing development and nitrogen loading in Waquoit Bay,Massachusetts

Change analysis of eelgrass distribution in Waquoit Bay demonstrated a rapid decline of eelgrass habitat between 1987 and 1992. Aerial photography and ground-truth assessments of eelgrass distribution in the Waquoit Bay National Estuarine Research Reserve documented progressive loss in eelgrass acreage and fragmentation of eelgrass beds that we relate to the degree of housing development and associated nitrogen loading, largelyvia groundwater, within various sub-basins of the estuary. The sub-basins with greater housing density and higher nitrogen loading rates showed more rapid rates of eelgrass decline. In eelgrass mesocosm studies at the Jackson Estuarine Laboratory, excessive nitrogen loading stimulated proliferation of algal competitors (epiphytes, macroalgae, and phytoplankton) that shade and thereby stress eelgrass. We saw domination by each of these three algal competitors in our field observations of eelgrass decline in Waquoit Bay. Our study is the first to relate housing development and nitrogen loading rates to eelgrass habitat loss. These results for the Waquoit Bay watershed provide supporting evidence for management to limit development that results in groundwater nitrogen loading and to initiate remedial action in order to reverse trends in eelgrass habitat loss.     

Genetic Structure and Diversity of <Emphasis Type="Italic">Zostera marina</Emphasis> (Eelgrass) in the San Juan Archipelago,Washington, USA

Using data from eight autosomal microsatellite loci, we investigated levels of within- and between-site variation in the seagrass Zostera marina L. (eelgrass) from eight locations in the San Juan Archipelago, located in the northwest corner of Washington, USA. Only 117 of the 365 samples collected were unique individuals, and there were large differences in the estimates of clonality among sites. Site-specific genotypic richness ranged from 0.082 to 0.688, and the distribution of ramets and genets varied widely within sites. No multilocus genotypes were shared between sites. We found significant differences in distribution of alleles and variance in allele frequencies among sites, suggesting substantial genetic population substructuring. We detected low levels of genetic diversity in two sites known to have undergone recent declines and a genetic signature of population expansion in a site known to be increasing. Thus, like elsewhere, we find that genetic studies add an important component to monitoring programs in this region.     

Changes in the abundance of the seagrassesZostera marina L. (eelgrass) andRuppia maritima L. (widgeongrass) in San Diego, California, following and El Niño Event

Changes in environmental conditions can be accompanied by shifts in the distribution and abundances of organisms. When physical factors become unsuitable for growth ofZostera marina (eelgrass), which is a dominant seagrass species in North America, other more ruderal seagrass species, includingRuppia maritima (widgeongrass), often increase in abundance or replace the dominant species. We report the proliferation of widgeongrass into eelgrass beds in Mission Bay and San Diego Bay in San Diego, California, during the 1997 to 1998 El Niño Southern Oscillation (ENSO). Widgeongrass persisted in these eelgrass beds at least one year after a return to non-ENSO conditions and an increase in eelgrass density. We suggest that a warming of the water in two bays in San Diego by 1.5–2.5°C could result, in a permanent shift in the local seagrass vegetation from eelgrass to widgeongrass. This shift, could, have substantial ecosystem-level ramifications.     

The effects of eelgrass habitat loss on estuarine fish communities of southern New England

We studied the late June–August fish community in extant and former eelgrass (Zostera marina L.) habitats in 15 estuaries of Buzzards Bay, and in Waquoit Bay, Massachusetts, U.S. Our objective was to quantify the effects of eelgrass habitat loss on fish abundance, biomass, species composition and richness, life-history characteristics, and habitat use by examining the response of the fish community to eelgrass loss in Waquoit and Buttermilk Bays over an 11-yr period (1988–1999) and in 14 other embayments of Buzzards Bay during 1993, 1996, and 1998. Sampling sites were located in present-day or historical eelgrass beds and were classified according to eelgrass habitat complexity (zero complexity: no eelgrass; low complexity: <100 eelgrass shoots or <100 g wet weight m⁻²; high complexity: ≥100 shoots and ≥100 g wet weight m⁻²). Habitats that had lost eelgrass included a variety of substratum types, from bare mud bottom to dense accumulations of red, brown, and green macroalgae (up to 7,065 g wet weight m⁻²). Contemporaneous sampling of fish (by otter trawl) and vegetated habitat (by divers) was conducted at each site. Overall, fish abundance, biomass, species richness, dominance, and life history diversity decreased significantly along the gradient of decreasing eelgrass habitat complexity. Loss of eelgrass was accompanied by significant declines in these measures of fish community integrity. Ten of the 13 most common species collected from 1988–1996 in Waquoit and Buttermilk Bays showed maximum abundance and biomass in sites with high eelgrass habitat complexity. All but two common species declined in abundance and biomass with the complete loss of eelgrass.     

Relative Impacts of Natural Stressors on Life History Traits Underlying Resilience of Intertidal Eelgrass (Zostera marina L.)

Seagrasses are a critical marine habitat and are in decline worldwide. Previous studies have demonstrated that factors such as sediment conditions, resource availability, and desiccation can influence life history transitions and morphology in intertidal eelgrass (Zostera marina L.) and therefore potential for recovery after a disturbance. We combined these factors in an exploratory path model linking environmental conditions to eelgrass vegetative (shoot size and density) and reproductive traits (branching, flowering, seedling recruitment). In this construction, significant path coefficients reveal factors influencing recovery potential. To test the path model, we collected abiotic and eelgrass data at 17 sites in the southern Salish Sea (Washington, USA) and assessed model fit with structural equation modeling. Significant path coefficients linked sediment organic content to shoot size and seedling recruitment, tidal amplitude to reduced flowering, and shoot size and density were inversely correlated. We found no significant links between any morphological or life history trait and nutrient availability, possibly reflecting consistently high nutrients across sites. Variable rates of asexual reproduction and a trade-off between shoot size and density may reflect light limitation in eelgrass’ intertidal range, where light is not expected to be strongly limiting. Overall, structural equation modeling identified organic-rich sediments as relatively more important than desiccation and nutrient conditions for resilience potential of intertidal eelgrass populations in this region. Life history and morphological traits provide eelgrass with recovery mechanisms from disturbance where sediments are muddy, which has implications for both conservation and restoration.     

The response of fishes to submerged aquatic vegetation complexity in two ecoregions of the mid-Atlantic bight: Buzzards Bay and Chesapeake Bay

Estuarine seagrass ecosystems provide important habitat for fish and invertebrates and changes in these systems may alter their ability to support fish. The response of fish assemblages to alteration of eelgrass (Zostera marina) ecosystems in two ecoregions of the Mid-Atlantic Bight (Buzzards Bay and Chesapeake Bay) was evaluated by sampling historical eelgrass sites that currently span a broad range of stress and habitat quality. In two widely separated ecoregions with very different fish faunas, degradation and loss of submerged aquatic vegetation (SAV) habitat has lead to declines in fish standing stock and species richness. The abundance, biomass, and species richness of the fish assemblage were significantly higher at sites that have high levels of eelgrass habitat complexity (biomass >100 wet g m^?2; density <100 shotts m^?2) compared to sites that have reduced eelgrass (biomass <100 wet g m^?2; density <100 shoots m^?2) or that have completely lost eelgrass. Abundance, biomass, and species richness at reduced eelgrass complexity sites also were more variable than at high eelgrass complexity habitats. Low SAV complexity sites had higher proportions of pelagic species that are not dependent on benthic habitat structure for feeding or refuge. Most species had greater abundance and were found more frequently at sites that have eelgrass. The replacement of SAV habitats by benthic macroalgae, which occurred in Buzzards Bay but not Chesapeake Bay, did not provide an equivalent habitat to seagrass. Nutrient enrichment-related degradation of eelgrass habitat has diminished the overall capacity of estuaries to support fish populations.     

Factors influencing spatial and annual variability in eelgrass (Zostera marina L.) meadows in Willapa Bay, Washington, and Coos Bay, Oregon, estuaries

Environmental factors that influence annual variability and spatial differences (within and between estuaries) in eelgrass meadows (Zostera marine L.) were examined within Willapa Bay, Washington, and Coos Bay, Oregon, over a period of 4 years (1998–2001). A suite of eelgrass metrics were recorded annually at field sites that spanned the estuarine gradient from the marine-dominated to mesohaline region of each estuary. Plant density (shoots m^?2) of eelgrass was positively correlated with summer estuarine salinity and inversely correlated with water temperature gradients in the estuaries. Eelgrass density, biomass, and the incidence of flowering plants all increased substantially in Willapa Bay, and less so in Coos Bay, over the duration of the study. Warmer winters and cooler summers associated with the transition from El Niño to La Niña ocean conditions during the study period corresponded with this increase in eelgrass abundance and flowering. Large-scale changes in climate and nearshore ocean conditions may exert a strong regional influence on eelgrass abundance that can vary annually by as much as 700% in Willapa Bay. Lower levels of annual variability observed in Coos Bay may be due to the stronger and more direct influence of the nearshore Pacific Ocean on the Coos Bay study sites. The results suggest profound effects of climate variation on the abundance and flowering of eelgrass in Pacific Northwest coastal estuaries.     

Fishes and decapod crustaceans of Cape Cod eelgrass meadows: Species composition,seasonal abundance patterns and comparison with unvegetated substrates

Bimonthly trawl samples from eelgrass and nearby unvegetated areas on Cape Cod, Massachusetts, showed greater species richness in eelgrass meadows relative to unvegetated areas, and greater summer abundance in vegetation for decapod crustaceans and fishes. The composition of eelgrass-associated decapods and fishes was dominated by cold-water taxa and was strikingly different from that of the better studied eelgrass meadows of the mid-Atlantic coast. Four of the eight decapod species collected, including the second and third most abundant taxa, do not even appear in collections reported from Chesapeake Bay eelgrass meadows. Similarly, 10 of the 22 fish species taken, including the first and sixth most abundant species, are not reported from Chesapeake Bay eelgrass samples. Cape Cod eelgrass beds seem to play a nursery role for several commercially important fish species, although the nursery function is less obvious than in previously studied mid-Atlantic eelgrass meadows.     

Eelgrass (<Emphasis Type="Italic">Zostera marina</Emphasis> L.) in the Chesapeake Bay Region of Mid-Atlantic Coast of the USA: Challenges in Conservation and Restoration

Decreases in seagrass abundance reported from numerous locations around the world suggest that seagrass are facing a global crisis. Declining water quality has been identified as the leading cause for most losses. Increased public awareness is leading to expanded efforts for conservation and restoration. Here, we report on abundance patterns and environmental issues facing eelgrass (Zostera marina), the dominant seagrass species in the Chesapeake Bay region in the mid-Atlantic coast of the USA, and describe efforts to promote its protection and restoration. Eelgrass beds in Chesapeake Bay and Chincoteague Bay, which had started to recover from earlier diebacks, have shown a downward trend in the last 5–10 years, while eelgrass beds in the Virginia coastal bays have substantially increased in abundance during this same time period. Declining water quality appears to be the primary reason for the decreased abundance, but a recent baywide dieback in 2005 was associated with higher than usual summer water temperatures along with poor water clarity. The success of eelgrass in the Virginia coastal bays has been attributed, in part, to slightly cooler water due to their proximity to the Atlantic Ocean. A number of policies and regulations have been adopted in this region since 1983 aimed at protecting and restoring both habitat and water quality. Eelgrass abundance is now one of the criteria for assessing attainment of water clarity goals in this region. Numerous transplant projects have been aimed at restoring eelgrass but most have not succeeded beyond 1 to 2 years. A notable exception is the large-scale restoration effort in the Virginia coastal bays, where seeds distributed beginning in 2001 has initiated an expanding recovery process. Our research on eelgrass abundance patterns in the Chesapeake Bay region and the processes contributing to these patterns have provided a scientific background for management strategies for the protection and restoration of eelgrass and insights into the causes of success and failure of restoration efforts that may have applications to other seagrass systems.     

Winter Flounder Larval Genetic Population Structure in Narragansett Bay,RI: Recruitment to Juvenile Young-of-the-Year

The genetic population structure of winter flounder larvae was examined in Narragansett Bay, RI. Winter flounder larvae collected from 20 stations within Narragansett Bay and one station outside of the Bay were analyzed for six microsatellite loci. When analyzed by geographic collection sites, there were 16 distinct genetic populations of winter flounder larvae (R _ST values from 0.1 to 0.6). The presence of distinct genetic populations was supported by assignment of individual larvae to populations by Bayesian analysis. Bayesian analysis resulted in 14 distinct genetic populations that overlapped with the geographically distributed populations (R _ST values from 0.1 to 0.6). Young-of-the-year juveniles collected in the same year as the larvae were also analyzed at the same six microsatellite loci. Juveniles were assigned to larvae populations by both a Bayesian approach and a neural network approach. Juveniles collected from within Narragansett Bay were found to arise from geographically adjacent Narragansett Bay winter flounder larval populations (>99%), suggesting no widespread movement of juveniles away from spawning grounds. These results are discussed in the context of winter flounder population biology in Narragansett Bay, RI.     

Comparative Analysis of Stability—Genetic Diversity in Seagrass (<Emphasis Type="Italic">Posidonia oceanica</Emphasis>) Meadows Yields Unexpected Results

The diversity–stability relationship is the subject of a long-standing debate in ecology, but the genetic component of diversity has seldom been explored. In this study, we analyzed the interplay between genetic diversity and demographic responses to environmental pressures. This analysis included 30 meadows formed by the Mediterranean endemic seagrass, Posidonia oceanica, showing a wide range of population dynamics ranging from a near equilibrium state to steep decline due to strong environmental pressures close to aquaculture installations. Our results show that sedimentation rates are much better predictors of mortality than clonal or genetic components. An unexpected positive trend was observed between genotypic diversity and mortality, along with a negative relationship between allelic richness and net population growth. Yet such trends disappeared when excluding the most extreme cases of disturbance and mortality, suggesting the occurrence of a threshold below which no relationship exists. These results contrast with the positive relationship between genotypic diversity and resistance or resilience observed in previous manipulative experiments on seagrass. We discuss the reasons for this discrepancy, including the difficulties in designing experiments reflecting the complexity of natural meadows.     

Habitat Affects Survival of Translocated Bay Scallops, Argopecten irradians concentricus (Say 1822), in Lower Chesapeake Bay

Bay scallop (Argopecten irradians) populations existed in Chesapeake Bay until 1933, when they declined dramatically due to a loss of seagrass habitat. Since then, there have been no documented populations within the Bay. However, some anecdotal observations of live bay scallops within the lower Bay suggest that restoration of the bay scallop is feasible. We therefore tested whether translocated adults of the southern bay scallop, Argopecten irradians concentricus, could survive during the reproductive season in vegetated and unvegetated habitats of the Lynnhaven River sub-estuary of lower Chesapeake Bay in the absence of predation. Manipulative field experiments evaluated survival of translocated, caged adult scallops in eelgrass Zostera marina, macroalgae Gracilaria spp., oyster shell, and rubble plots at three locations. After a 3-week experimental period, scallop survival was high in vegetated habitats, ranging from 98% in their preferred habitat, Z. marina, to 90% in Gracilaria spp. Survival in Z. marina was significantly higher than that in rubble (76%) and oyster shell (78%). These findings indicate that reproductive individuals can survive in vegetated habitats of lower Chesapeake Bay when protected from predators and that establishment of bay scallop populations within Chesapeake Bay may be viable.     

Tectonic Subsidence of California Estuaries Increases Forecasts of Relative Sea-Level Rise

Even along the generally uplifting coast of the Pacific US, local geologic structures can cause subsidence. In this study, we quantify Holocene-averaged subsidence rates in four estuaries (Carpinteria Slough, Goleta Slough, Campus Lagoon, and Morro Bay) along the southern and central California coast by comparing radiocarbon-dated estuarine material to a regional sea-level curve. Holocene-averaged rates of vertical motion range from subsidence of 1.4?±?2.4, 1.2±0.4, and 0.4?±?0.3 mm/year in Morro Bay, Carpinteria Slough, and Goleta Slough, respectively, to possible uplift in Campus Lagoon (?0.1?±?0.9 mm/year). The calculated rates of subsidence are of the same magnitude as rates of relative sea-level rise experienced over the late Holocene and effectively double the ongoing rates of relative sea-level rise experienced over the last five decades on other parts of the coast. The difference in rates of vertical motion among these four estuaries is attributed to their geological settings. Estuaries developed in subsiding geological structures such as synclines and fault-bounded basins are subsiding at much higher rates than those developed within flooded river valleys incised into marine terraces. Restoration projects accounting for future sea-level rise must consider the geologic setting of the estuaries and, if applicable, include subsidence in future sea-level rise scenarios, even along the tectonically uplifting US Pacific Coast.     

Restored Eelgrass (<Emphasis Type="Italic">Zostera marina</Emphasis> L.) as a Refuge for Epifaunal Biodiversity in Mid-Western Atlantic Coastal Bays

As nearshore ecosystems are increasingly degraded by human activities, active restoration is a critical strategy in ensuring the continued provision of goods and services by coastal habitats. After being absent for nearly six decades, over 1800 ha of the foundational species eelgrass (Zostera marina L.) has been successfully re-established in the coastal bays of the mid-western Atlantic, USA, but nothing is known about the recovery of associated animal communities in this region. Here, we determine the patterns and drivers of functional recovery in epifaunal invertebrates associated with the restored eelgrass habitat from 2001 to 2013. After less than a decade, the invertebrate community in the restored bed was richer, more even, and exhibited greater variation in functional traits than a nearby reference bed. Analysis of a suite of environmental and physical variables using random forests revealed these differences were primarily due to the increasing area and density of eelgrass, a direct consequence of ongoing restoration efforts. Based on analysis of functional traits, we propose that the rapid life histories of constituent organisms may have played a key role in their successful recovery. We also speculate that diverse epifaunal communities may have contributed to the restoration success through a well-described mutualism with eelgrass. Given that restored eelgrass now make up 32 % of total seagrass cover in the mid-Atlantic coastal bays, this restoration may conserve regional biodiversity by providing new and pristine habitat, particularly given the general decline of existing eelgrass in this region.     

Large-Scale Differences in Community Structure and Ecosystem Services of Eelgrass (<Emphasis Type="Italic">Zostera marina</Emphasis>) Beds Across Three Regions in Eastern Canada

Eelgrass (Zostera marina) forms extensive beds in temperate coastal and estuarine environments worldwide and provides important ecosystem services, including habitat for a wide range of species as well as nutrient cycling and carbon storage. However, little is known about how eelgrass ecosystem structure and services differ naturally among regions. Using large-scale field surveys, we examined differences in eelgrass bed structure, carbon and nitrogen storage, community composition, and habitat services across three distinct regions in Eastern Canada. We focused on eelgrass beds with low anthropogenic impacts to compare natural differences. In addition, we analyzed the relationships of eelgrass bed structure with environmental conditions, and species composition with bed structure and environmental conditions, to elucidate potential drivers of observed differences. Our results indicate that regional differences in eelgrass bed structure were weakly correlated with water column properties, whereas differences in carbon and nitrogen storage were mainly driven by differences in eelgrass biomass. There were distinct regional differences in species composition and diversity, which were particularly linked to temperature, as well as eelgrass bed structure indicating differences in habitat provision. Our results highlight natural regional differences in ecosystem structure and services which could inform spatial management and conservation strategies for eelgrass beds.     

Distribution, abundance, and habitat characteristics of juvenile tautog (Tautoga onitis, family labridae) in Narragansett Bay, Rhode Island, 1988–1992

Estuarine nursery areas are critical for successful recruitment of tautog (Tautoga onitis), yet they have not been studied over most of this species' range. Distribution, abundance and habitat characteristics of young-of-the-year (YOY, age 0) and age 1+juvenile tautog were evaluated during 1988–1992 in the Narragansett Bay estuary, Rhode Island, using a 16-station, beach-seine survey. Estuary-wide abundance was similar among years. Greatest numbers of juveniles were collected at northern Narragansett Bay stations between July and September. Juvenile abundances varied with density of macroalgal and eelgrass cover; abundances ranged from 0.03 fish per 100 m² to 8.1 fish per 100 m². Although juveniles use eelgrass, macroalgae is the dominant vegetative cover in Narragansett Bay. Macroalgal habitats play a previously unrealized, important role and contribute to successful recruitment of juvenile tautog in Narragansett Bay. Juvenile abundances did not vary with sediment type or salinity, but were correlated with surface water temperature. Fish collected in June were age 1+ juveniles from the previous year-class (50–167 mm TL) and these declined in number after July or August. The appearance of YOY (25–30 mm TL) in July and August was coincident with the period of their greatest abundances. A precipitous decline in abundance occurred by October because of the individual or combined effects of mortality and movement to alternative habitats. Based on juvenile abundance, a previously unidentified spawning area was noted in Mount Hope Bay, a smaller embayment attached to the northeastern portion of Narragansett Bay. In August 1991, Hurricane Bob disrupted juvenile sise distribution and abundance, resulting in reduced numbers of YOY collected after the storm and few 1+ juveniles in 1992.     

Structural components of eelgrass (Zostera marina) meadows in the lower Chesapeake Bay—Fishes

The structure of the fish community associated with eelgrass beds in the lower Chesapeake Bay was studied over a 14 month period. A total of 24,182 individuals in 48 species was collected by otter trawl with Leiostomus xanthurus (spot) comprising 63% of the collection, Syngnathus fuscus (northern pipefish) 14%, Anchoa mitchilli (bay anchovy) 9%, and Bairdiella chrysoura (silver perch) 5%. The density and diversity of fishes were higher in vegetated areas compared to unvegetated areas; fishes were more abundant in night collections Fish abundance and species number increased in the spring and early summer as both water temperature and eelgrass biomass increased and decreased in the fall and winter as temperature and eelgrass biomass decreased. Gill netting revealed some of the top predators in the system, especially the sandbar shark, Carcharhinus milberti. The fish community in the Chesapeake Bay was quite different from North Carolina eelgrass fish communities. Most notable was the rarity of the pinfish, Lagodon rhomboides, which may be a very important predator in the structuring of the epifaunal communities.     

Likely Population-Level Effects of Contaminants on a Resident Estuarine Fish Species: Comparing <Emphasis Type="Italic">Gillichthys mirabilis</Emphasis> Population Static Measurements and Vital Rates in San Francisco and Tomales Bays

Gillichthys mirabilis population static measurements (abundance, age, and size class structures) and vital rates (growth, mortality, recruitment) were monitored on an annual basis from 2002 to 2007. Population-level metrics were used to gauge habitat quality at two study sites (a contaminated site and a reference site) in two large northern California estuaries (San Francisco and Tomales Bays). San Francisco Bay populations exhibited slower growth and higher mortality rates and contained higher amounts of contaminants than Tomales Bay. Recruitment rates were highest at contaminated sites (Stege Marsh and Walker Creek) in 3 years out of 5 years, suggesting low adult survival. This study suggests that population-level effects on a residential fish may be attributed to estuarine contamination on the US Pacific coast.