A field comparison of indicators of sublethal stress in the salt-marsh grassSpartina patens

There is a need for research into bioindicators of stress in threatened plant communities such as coastal wetlands. Land subsidence, diversion of sediment, and salt-water intrusion produce stresses associated with waterlogging, elevated salinity, and nutrient depletion. Temporal and spatial environmental variation (soil redox potential, interstitial water salinity, pH, ammonium and phosphorus, and cation and trace metal concentrations) was analyzed near Lake de Cade, Louisiana, in a brackish marsh which is a mosaic of healthy plant communities interspersed with areas where wetland loss is occurring. Environmental variation was related to indicators of stress inSpartina patens, which included variables derived from the adenine nucleotide levels in plants, leaf spectral reflectance, leaf proline concentrations, and shoot elongation. In a comparison of burned and unburned sites, streamside and inland marsh, and along a salinity gradient, among-site differences were found in spectral reflectance and adenine-nucleotide-related indicators. Although it was difficult to relate a single causal environmental variable to the response of a specific indicator, spectral reflectance in the visible light range responded to salinity or to elements borne in seawater, and adenine-nucleotide indices were sensitive to nutrient availability. The ability of indicators to detect plant responses changed during the growing season, suggesting that they were responding to the changing importance of different environmental factors. In addition, some reflectance indicator responses occurred along salinity gradients when salinity differences were less than those that were found to have ecologically meaningful effects in greenhouse experiments. A multivariate numerical approach was used to relate environmental variation with indicator responses. We concluded that factors which in combination cause the degradation and loss of Louisiana wetlands produce environmental conditions that are only subtly different from those in vigorously growing marsh communities.     

Interactive effects of hydrology and salinity on oligohaline plant species productivity: Implications of relative sea-level rise

Sea-level rise is anticipated to alter hydrologic and salinity regimes of coastal wetlands. We conducted a mesocosm experiment to determine species-level responses to 12 sea-level rise scenarios. Both hydrologic regime (−10, +5, and +20 cm flooding depth) and salinity level (fresh, 2‰, 4‰ and 6‰) were interactively manipulated. Within these various sea-level rise scenarios, we sought to determine the effects of hydrologic regime, salinity level, and the interaction of these two stresses on the productivity ofPanicum hemitomon, Sagittaria lancifolia, andSpartina patens, which are dominant macrophytes of fresh, intermediate, and brackish marsh types, respectively, in coastal Louisiana and the southeastern coastal plain. We found that altered hydrologic regimes and increased salinity levels differentially affected edaphic conditions and species-level productivity. Increases in flooding depth were most detrimental toS. patens. Salinity levels greater than 4‰ resulted in mortality ofP. hemitomon, and salinity levels of 6‰ resulted in reduced growth and eventual death, ofS. lancifolia. The effects of elevated salinity levels onP. hemitomon andS. lancifolia were exacerbated when coupled with increased flooding levels. Although soil organic matter was shown to increase in all vegetative conditions, increases were dependent upon the productivity of the species under the different hydrologic regimes and salinity levels withP. hemitomon displaying tremendous potential to increase soil organic matter under fresh conditions, especially when coupled with moderate flooding. The results of this study indicate that as plant communities are subjected to long-term changes in hydrology and salinity levels, community productivity and sustainability ulimately will be determined by species-level tolerances in conjunction with species interactions.     

Community Structure and Abiotic Determinants of Salt Marsh Plant Zonation Vary Across Topographic Gradients

We investigated compositions of plant communities and their abiotic determinants in the Yellow River estuary, China. Along a topographic gradient, we quantified plant compositions and abiotic factors in different vegetation zones, and examined the relationships between plant communities and abiotic factors using canonical correspondence analysis and the effects of vegetation shading using a removal experiment. The relationships between plant communities and abiotic factors differed between high elevations and low elevations. Salinity and flooding oppositely related with distributions of plant communities at low elevations, but they appeared to operate synergically at high elevations. The effects of vegetation shading were found to vary across the topographic gradient, indicating spatial variations in potential positive interactions among plants. These results suggest that spatial variations in determinants of community structure should be addressed in future studies in estuarine and coastal systems, as well as in other natural habitats.     

Spatial and Temporal Variation in Brackish Wetland Seedbanks: Implications for Wetland Restoration Following <Emphasis Type="Italic">Phragmites</Emphasis> Control

Chesapeake Bay tidal wetlands are experiencing a broad-scale, aggressive invasion by the non-native, clonal grass Phragmites australis. The grass is often managed with herbicides in efforts to restore native plant communities and wildlife habitat. Management efforts, however, can act as a disturbance, resulting in increased light availability, potentially fostering reinvasion from soil seedbanks. If native vegetation establishes quickly from seedbanks, the site should have greater resiliency against invasion, while disturbed sites where native plants do not rapidly establish may be rapidly colonized by P. australis. We surveyed the soil seedbank of three vegetation cover types in five Chesapeake Bay subestuaries: areas where P. australis had been removed, where P. australis was left intact, and with native, reference vegetation. We determined the total germination, the proportion of the seedbank that was attributable to invasive species, the richness, the functional diversity, and the overall composition of the seedbanks in each of the cover types (i.e., plots). After 2 years of herbicide treatment in the P. australis removal plots, vegetation cover type impacted the total germination or the proportion of invasive species in the seedbank. In contrast, we also found that seedbank functional composition in tidal brackish wetlands was not influenced by vegetation cover type in most cases. Instead, plots within a subestuary had similar seedbank functional composition across the years and were composed of diverse functional groups. Based on these findings, we conclude that plant community recovery following P. australis removal is not seed-limited, and any lack of native vegetation recruitment is likely the result of yet-to-be-determined abiotic factors. These diverse seedbanks could lead to resilient wetland communities that could resist invasions. However, due to the prevalence of undesirable species in the seedbank, passive revegetation following invasive plant removal may speed up their re-establishment. The need for active revegetation will need to be assessed on a case-by-case basis to ensure restoration goals are achieved.     

A Landscape-Scale Assessment of Above- and Belowground Primary Production in Coastal Wetlands: Implications for Climate Change-Induced Community Shifts

Above- and belowground production in coastal wetlands are important contributors to carbon accumulation and ecosystem sustainability. As sea level rises, we can expect shifts to more salt-tolerant communities, which may alter these ecosystem functions and services. Although the direct influence of salinity on species-level primary production has been documented, we lack an understanding of the landscape-level response of coastal wetlands to increasing salinity. What are the indirect effects of sea-level rise, i.e., how does primary production vary across a landscape gradient of increasing salinity that incorporates changes in wetland type? This is the first study to measure both above- and belowground production in four wetland types that span an entire coastal gradient from fresh to saline wetlands. We hypothesized that increasing salinity would limit rates of primary production, and saline marshes would have lower rates of above- and belowground production than fresher marshes. However, along the Northern Gulf of Mexico Coast in Louisiana, USA, we found that aboveground production was highest in brackish marshes, compared with fresh, intermediate, and saline marshes, and belowground production was similar among all wetland types along the salinity gradient. Multiple regression analysis indicated that salinity was the only significant predictor of production, and its influence was dependent upon wetland type. We concluded that (1) salinity had a negative effect on production within wetland type, and this relationship was strongest in the fresh marsh (0–2 PSU) and (2) along the overall landscape gradient, production was maintained by mechanisms at the scale of wetland type, which were likely related to plant energetics. Regardless of wetland type, we found that belowground production was significantly greater than aboveground production. Additionally, inter-annual variation, associated with severe drought conditions, was observed exclusively for belowground production, which may be a more sensitive indicator of ecosystem health than aboveground production.     

Influences of Salinity and Light Availability on Abundance and Distribution of Tidal Freshwater and Oligohaline Submersed Aquatic Vegetation

Submersed aquatic vegetation (SAV) communities have undergone declines worldwide, exposing them to invasions from non-native species. Over the past decade, the invasive species Hydrilla verticillata has been documented in several tributaries of the lower Chesapeake Bay, Virginia. We used annual aerial mapping surveys from 1998 to 2007, integrated with spatial analyses of water quality data, to analyze the patterns and rates of change of a H. verticillata-dominated SAV community and relate them to varying salinity and light conditions. Periods of declining SAV coverage corresponded to periods where salinities exceeded 7 and early growing season (April to May) Secchi depths were <0.4 m. Increases were driven by the expansion of H. verticillata along with several other species into the upper estuary, where some areas experienced an 80% increase in cover. Field investigations revealed H. verticillata dominance to be limited to the upper estuary where total suspended solid concentrations during the early growing season were <15 mg l⁻¹ and salinity remained <3. The effect of poor early growing season water clarity on annual SAV growth highlights the importance of water quality during this critical life stage. Periods of low clarity combined with periodic salinity intrusions may limit the dominance of H. verticillata in these types of estuarine systems. This study shows the importance of the use of these types of biologically relevant episodic events to supplement seasonal habitat requirements and also provides evidence for the potential important role of invasive species in SAV community recovery.     

Environmental Determinants of Emergent Macrophyte Vegetation in Pacific Northwest Estuarine Tidal Wetlands

We investigated whether within wetland environmental conditions or surrounding land cover measured at multiple scales were more influential in structuring regional vegetation patterns in estuarine tidal wetlands in the Pacific Northwest, USA. Surrounding land cover was characterized at the 100, 250, and 1,000 m, and watershed buffer scales. Vegetation communities were characterized by high species richness, lack of monotypic zonation, and paucity of invasive species. The number of species per site ranged between 4 and 20 (mean?±?standard deviation?=?10.2?±?3.1). Sites supported a high richness (mean richness of native species 8.7?±?2.8) and abundance of native macrophytes (mean relative abundance 85 %?±?19 %). Vegetation assemblages were dominated by a mix of grasses, sedges, and herbs with Sarcocornia pacifica and Distichlis spicata being common at sites in the oceanic zone of the estuary and Carex lyngbyei and Agrostis stolonifera being common at the fresher sites throughout the study area. The vegetation community was most strongly correlated with salinity and land cover within close proximity to the study site and less so with land cover variables at the watershed scale. Total species richness and richness of native species were negatively correlated with the amount of wetland in the buffer at all scales, while abundance of invasive species was significantly correlated to within wetland factors, including salinity and dissolved phosphorus concentrations. Landscape factors related to anthropogenic disturbances were only important at the 100-m buffer scale, with anthropogenic disturbances further from the wetland not being influential in shaping the vegetation assemblage. Our research suggests that the traditional paradigms of tidal wetland vegetation structure and environmental determinants developed in east coast US tidal wetlands might not hold true for Pacific Northwest wetlands due to their unique chemical and physical factors, necessitating further detailed study of these systems.     

A framework for evaluating potential ecological effects of implementing biological control of<Emphasis Type="Italic">Phragmites australis</Emphasis>

The increasing abundance ofPhragmites australis in many North American coastal and inland wetlands is of great concern to many scientists and land managers. While some considered the species native, others considered it an introduced invasive species. Regardless of its origin, control measures using mechanical, physical, and chemical means are implemented widely. With the exception of increased salinity, reductions in the abundance ofP. australis are usually temporary and control measures need to be repeated frequently increasing the cost and the potential for nontarget effects. The failure of traditional control attempts resulted in increased interest to develop a biological control program. Recent research suggests that genetically distinct populations (introduced and native) occur in North America. The native genotypes appear noninvasive and declining while the introduced genotypes are invasive replacing native genotypes where they co-occur. Accidentally introduced European herbivores specialized onP. australis are spreading across North America and can be extremely abundant in the Northeast. Introduction of additional specialized herbivores as biological control agents from the European range ofP. australis, if approved and successful, will result in changes in plant communities, wetland food webs, and management practices. The potential changes associated with introduction of biological control agents to wetland plant communities and their food webs may be more beneficial than current management strategies allowing the introducedP. australis genotypes and its associated herbivores to spread.     

The Influence of Freshwater on Nekton Community Structure in Hydrologically Distinct Basins in Northeastern Florida Bay, FL, USA

Natural patterns of freshwater delivery to the Florida Bay estuary have been disrupted by flood-control and water-supply projects. Restoration efforts are likely to alter salinity regimes and patterns of nekton distribution and abundance. Spatial and seasonal community structure differences were analyzed for small-bodied and large-bodied nekton collected by fisheries-independent monitoring from 2006 through 2009 in the northeastern basins of Florida Bay. The small-bodied nekton community was dominated by resident fish that may be indicators of ecosystem health because they spend their lives within the bay and are not directly influenced by human harvest; the large-bodied nekton community was dominated by transient and, in some cases, economically important species. Differences in community structure revealed a gradient in similarity that was associated with freshwater influence, as determined by salinity variability over the study period. These observed changes associated with salinity regimes within and between basins underscore the importance of monitoring communities before and after alterations in freshwater inflow.     

Increase in Weather Patterns Generating Extreme Desiccation Events: Implications for Mediterranean Rocky Shore Ecosystems

Anthropogenic global climate change is anticipated to increase the frequency and intensity of transient extreme weather events that can be catastrophic to ecological communities. Here, we characterize an extremely stressful, transient phenomenon on southeastern Mediterranean (Israel) rocky shores: prolonged desiccation events (PDE). We also examined (during 2012–2014) its potential ecological impacts on the unique intertidal Mediterranean Sea ecosystem—vermetid reefs. In this region, where the tide is minimal but the rocky intertidal is extensive, high pressure and dry easterly winds generated by specific synoptic systems can suppress tidal flooding and create stressful desiccation conditions in the lower intertidal zones for many consecutive days (several days to weeks). Very long and strong PDEs resulted in extensive macroalgal bleaching and their eventual removal from the rocks and caused mortality of stranded topshell snails and partial collapse of the mid-shore limpet population. Dominant intertidal fleshy algae were shown to be more sensitive than calcareous algae to desiccation stress, but both die after 24 h of exposure in lab conditions. Re-analysis of climatic data for the period 1960–2010 showed a considerable increase in the frequency of PDE-generating synoptic systems, mainly during winter. This means that desiccation stress has already increased on southeastern Mediterranean vermetid reef ecological communities, and if this trend continues, we can expect further increases in aerial exposure and desiccation stress that could have long-term impacts on this fragile ecosystem. These results demonstrate the importance of change in patterns of synoptic systems and wind regimes to the integrity of coastal ecological communities.     

Shifting nutrient limitation and eutrophication effects in marsh vegetation across estuarine salinity gradients

In light of widespread coastal eutrophication, identifying which nutrients limit vegetation and the community consequences when limitation is relaxed is critical to maintaining the health of estuarine marshes. Studies in temperate salt marshes have generally identified nitrogen (N) as the primary limiting nutrient for marsh vegetation, but the limiting nutrient in low salinity tidal marshes is unknown. I use a 3-yr nutrient addition experiment in mid elevation,Spartina patens dominated marshes that vary in salinity along two estuaries in southern Maine to examine variation in nutrient effects. Nutrient limitation shifted across estuarine salinity gradients; salt and brackish marsh vegetation was N limited, while oligohaline marsh vegetation was co-limited by N and phosphorus (P). Plant tissue analysis ofS. patens showed plants in the highest salinity marshes had the greatest percent N, despite N limitation, suggesting that N limitation in salt marshes is partially driven by a high demand for N to aid in salinity tolerance. Fertilization had little effect on species composition in monospecificS. patents stands of salt and brackish marshes, but N+P treatments in species-rich oligohaline marshes significantly altered community composition, favoring dominance by high aboveground producing plants. Eutrophication by both N and P has the potential to greatly reduce the characteristic high diversity of oligohaline marshes. Inputs of both nutrients in coastal watersheds must be managed to protect the diversity and functioning of the full range of estuarine marshes.     

Predation on the rocky shores of Patagonia,Argentina

Rocky intertidal communities of Argentinean Patagonia are exposed to harsh physical conditions caused by dry, strong southern trade winds (mean speed 45 km h^-1, gusts up to 140 km h^-1) that result in intense desiccation of intertidal organisms. Predator distributions in these communities were evaluated from April 2003 to December 2004 at two exposed headlands and six protected bays in Cabo dos Bahias (44°50′S, 65°40′W). Crabs and sea stars dominated the predator assemblage, with occasional scavenger snails and fish also present. During low tide, predators were never found in the open but were always associated with shelter (primarily within mussel beds and coralline algae), suggesting a strong predator dependency on foundation species to buffer them from physical stress. Few predators (mostly crabs) emerged from shelter at high tide. Unlike the larger predators found on Chilean rocky shores, invertebrate predators in this system are diminutive, generally < 2 cm. The lone exception was the newly discovered invasive green crab,Carcinus mamas. Feeding trials, gut content analyses, and visual surveys indicated that native predators feed primarily on small, soft-bodied prey.C. mamas fed on slow-moving and sessile animals, including the super abundant musselPerumytilus purpuratus, with much greater voracity than native predators. Because native intertidal organisms are dependent on mussel beds and coralline algae for shelter from desiccation, successful invasion ofC. mamas may lead to a significant decrease in native diversity by consuming foundation species. This study represents a preliminary survey of predator distributions and feeding habits on the rocky shores of Argentinean Patagonia and provides important baseline data to evaluate trophic linkages and predatory effects on Patagonian rocky shores.     

Microbial nitrogen cycling at the saltwater–freshwater interface

Microbial communities inhabiting “subterranean estuaries” along the subsurface freshwater–saltwater continuum determine the fate of nitrogen discharged to coastal waters. Little is known about the microbes that comprise these communities, or what their ecological and biogeochemical responses will be to increased salinity resulting from saltwater intrusion and aquifer salinization. This review covers basic aspects of the nitrogen cycle relevant to the coastal subsurface and provides a framework for predicting the types of microbes and nitrogen transformations that exist in different subterranean estuary systems. Literature concerning the freshwater–saltwater mixing zones of surficial estuaries, where microbial communities are better characterized, is also reviewed to explore what is known about the impact of increasing salinity on both the community composition and biogeochemical function of the microbial assemblage. Collectively, these studies suggest that salinization will alter microbial community composition for all functional groups involved in nitrogen cycling, and may lead to decreases in nitrification and coupled nitrification-denitrification, and increases in dissimilatory nitrate reduction to ammonium (DNRA). Future collaboration between hydrogeologists and microbial ecologists is needed to fully predict the impact of saltwater intrusion on subsurface microbial communities.     

Living Shorelines Support Nearshore Benthic Communities in Upper and Lower Chesapeake Bay

Human population growth and sea-level rise are increasing the demand for protection of coastal property against shoreline erosion. Living shorelines are designed to provide shoreline protection and are constructed or reinforced using natural elements. While living shorelines are gaining popularity with homeowners, their ability to provide ecological services (e.g., habitat provision and trophic transfer) is not well understood, and information is needed to improve coastal and resource management decision-making. We examined benthic community responses to living shorelines in two case-study subestuaries of Chesapeake Bay using a before-after control-impact study design. At Windy Hill, a bulkhead was removed and replaced by three tombolos, sand fill, and native marsh vegetation. At Lynnhaven, 25 m of eroding marsh shoreline was stabilized with coir logs, sand fill, and native marsh vegetation. Communities of large (>?3 mm) infauna adjacent to living shorelines at both locations tended to increase in biomass by the end of the study period. Community compositions changed significantly following living shoreline construction at Windy Hill, reflecting a trend toward higher density and biomass of large bivalves at living shorelines compared to pre-construction. Increasing trends in density and biomass of clams and simultaneously decreasing density and decreasing trends in biomass of polychaetes suggest a transition toward stable infaunal communities at living shorelines over time, though longer-term studies are warranted.     

Energy transition,CO2 mitigation,and air pollutant emission reduction: scenario analysis from IPAC model

The salinization of freshwater-dependent coastal ecosystems precedes inundation by sea level rise. This type of saltwater intrusion places communities, ecosystems, and infrastructure at substantial risk. Risk perceptions of local residents are an indicator to gauge public support for climate change adaptation planning. Here, we document residential perspectives on the present and future threats posed by saltwater intrusion in a rural, low-lying region in coastal North Carolina, and we compare the spatial distribution of survey responses to physical landscape variables such as distance to coastline, artificial drainage density, elevation, saltwater intrusion vulnerability, and actual salinity measured during a synoptic field survey. We evaluate and discuss the degree of alignment or misalignment between risk perceptions and metrics of exposure to saltwater intrusion. Risk perceptions align well with the physical landscape characteristics, as residents with greater exposure to saltwater intrusion, including those living on low-lying land with high concentrations of artificial drainages, perceive greater risk than people living in low-exposure areas. Uncertainty about threats of saltwater intrusion is greatest among those living at higher elevations, whose properties and communities are less likely to be exposed to high salinity. As rising sea levels, drought, and coastal storms increase the likelihood of saltwater intrusion in coastal regions, integrated assessments of risk perceptions and physical exposure are critical for developing outreach activities and planning adaptation measures.

     

Response of a subtropical estuarine marsh to local climatic change in the southwestern Gulf of Mexico

We examined the contrasting, effects of floods and droughts produced by large changes in local climatology on vegetation patterns in Nueces marsh, a semi-arid subtropical salt marsh in south Texas from 1995 to 2005. Climate variations during the study included an initial 4-yr period of moderate conditions, followed by a 2-yr interval of drought, and a recent 4-yr wet period that included large-scale floods. Variation in freshwater inflow, rainfall, and potential evapotranspiration were used in conjunction with field measurements of salinity, inorganic nitrogen, and vegetation structure collected at sites located at varying distances from Nueces Bay. Tidal creek salinities varied with Nueces Bay salinity, with strength of effect inversely related to distance from the bay. Mean (±standard deviation) pore water salinities ranged from 59±54‰ at two high, marsh stations farthest from the bay (10.1 km distant) to 30±21‰ in soil at a low marsh site closest to the bay (0.5 km distant). Mean pore water ammonium was also higher at stations most distant from the bay; nitrate + nitrite did not exhibit a high marsh to low marsh gradient. Nueces Bay salinity decreased substantially when the 10-d cumulative mean daily Nueces River flows exceeded 10 m³ s⁻¹. During periods of low and moderate flood frequency (flows mostly below 10 m³ s⁻¹), vegetation assemblages were dominated by stress-tolerant clonal plants. A catastrophic flood, which immersed vegetation for several weeks between July and September 2002, resulted in extensive plant mortality, but within months, unvegetated areas were rapidly colonized by the obligate annualSalicornia bigelovii. With the end of major flooding by late 2004, plant community structure began a return to pre-drought assemblages at high and middle marsh stations by summer 2005. At the low marsh station, new conditions favored clonal dominants (Spartina alterniflora andBorrichia frutescens), with the latter replacingSalicornia virginica as the dominant species. Our results support the theory that the importance of competition and abiotic stress in determining community composition are inversely related.     

Loss of Coastal Strand Habitat in Southern California: The Role of Beach Grooming

We investigated the role of beach grooming in the loss of coastal strand ecosystems. On groomed beaches, unvegetated dry sand zones were four times wider, macrophyte wrack cover was >9 times lower, and native plant abundance and richness were 15 and >3 times lower, respectively, compared to ungroomed beaches. Experimental comparisons of native plant performance were consistent with our survey results: although initial germination was similar, seed bank, survival, and reproduction were significantly lower in groomed compared to ungroomed plots. Rates of aeolian sand transport were significantly higher in groomed plots, while native plants or wrack placed in that zone reduced sand transport. Our results suggest beach grooming has contributed to widespread conversion of coastal strand ecosystems to unvegetated sand. Increased conservation of these threatened coastal ecosystems could help retain sediment, promote the formation of dunes, and maintain biodiversity, wildlife, and human use in the face of rising sea levels.     

The impact of a severe drought on the vegetation of a subtropical estuary

In order to document the effect of the recent drought and the resulting marine intrusion event on plant-community shifts in a Louisiana estuary, we analyzed two vegetation data sets collected in Barataria estuary in 1997 and 2000 and compared community shifts to surface salinity changes at four points along the estuarine gradient within the study area. We used the major vegetation types identified in our previous research of larger data sets and tested the use of a simple vegetation classification technique. This vegetation classification technique is based primarily on the dominant and co-dominant species, and secondarily on the number of taxa observed. To distinguish vegetation types with similar dominant species but different associated species, the vegetation classification technique used a salinity score derived from the species composition. Surface water salinity increases were reflected by a change in species composition in the mesohaline to fresh marshes. The largest species composition shift observed was the shift from oligohaline wiregrass (species rich vegetation type dominated bySpartina patens) to mesohaline wiregrass (vegetation type dominated byS. patens with few other species). Shifts in vegetation composition may have been enhanced by the presence of the major dominant species at a low abundance in other vegetation types. The vegetation classification technique used could classify over 95% of the stations. This vegetation classification technique provides a simple method to classify Louisiana's coastal vegetation based on plant species composition.     

Invasions in Marine Communities: Contrasting Species Richness and Community Composition Across Habitats and Salinity

While many studies of non-native species have examined either soft-bottom or hard-bottom marine communities, including artificial structures at docks and marinas, formal comparisons across these habitat types are rare. The number of non-indigenous species (NIS) may differ among habitats, due to differences in species delivery (trade history) and susceptibility to invasions. In this study, we quantitatively compared NIS to native species richness and distribution and examined community similarity across hard-bottom and soft-sediment habitats in San Francisco Bay, California (USA). Benthic invertebrates were sampled using settlement panels (hard-bottom habitats) and sediment grabs (soft-bottom habitats) in 13 paired sites, including eight in higher salinity areas and five in lower salinity areas during 2 years. Mean NIS richness was greatest in hard-bottom habitat at high salinity, being significantly higher than each (a) native species at high salinity and (b) NIS richness at low salinity. In contrast, mean NIS richness in soft-bottom communities was not significantly different from native species richness in either high- or low-salinity waters, nor was there a difference in NIS richness between salinities. For hard-bottom communities, NIS represented an average of 79% of total species richness per sample at high salinity and 78% at low salinity, whereas the comparable values for soft bottom were 46 and 60%, respectively. On average, NIS occurred at a significantly higher frequency (percent of samples) than native species for hard-bottom habitats at both salinities, but this was not the case for soft-bottom habitats. Finally, NIS contributed significantly to the existing community structure (dissimilarity) across habitat types and salinities. Our results show that NIS richness and occurrence frequency is highest in hard-bottom and high-salinity habitat for this Bay but also that NIS contribute strongly to species richness and community structure across each habitat evaluated.     

Effects of an Acute Hypoxic Event on Microplankton Community Structure in a Coastal Harbor of Southern California

Fish mortality and hypoxic events occur in many coastal and inland systems and may result from natural or anthropogenically mediated processes. The effects of consequent changes in water biogeochemistry have been investigated for communities of benthic invertebrates and pelagic metazoans. The responses of micro-plankton assemblages, however, have remained largely unstudied. The northern basin of King Harbor, a small embayment within Santa Monica Bay, CA, USA, suffered a massive fish kill in March 2011 as a consequence of acute hypoxia. Dissolved oxygen concentrations < 0.1 ml?l^?1 were measured in the northern basin of the harbor for several days following the mortality event, and a strong spatial gradient of oxygen was observed from the northern basin to waters outside the harbor. The microplankton community within King Harbor differed significantly from a diatom-dominated community present in neighboring Santa Monica Bay. The latter region appeared unaffected by physicochemical changes, induced by the fish kill, that were observed within the harbor. A trophic shift was observed throughout King Harbor from a photoautotrophic-dominated assemblage to one of heterotrophic forms, with relative abundances of bacterivorous ciliates increasing by more than 80 % in the most impacted part of the harbor. Significant changes in community structure were observed together with dramatically reduced photosynthetic yield of the remaining phytoplankton, indicating severe physiological stress during the extreme hypoxia.