Determination of Trophic Transfer at a Created Intertidal Oyster (<Emphasis Type="Italic">Crassostrea ariakensis</Emphasis>) Reef in the Yangtze River Estuary Using Stable Isotope Analyses

Oysters can create reefs that provide habitat for associated species resulting in elevated resident abundances, lower mortality rates, and increased growth and survivorship compared to other estuarine habitats. However, there is a need to quantify trophic relationships and transfer at created oyster reefs to provide a better understanding of their potential in creating suitable nekton habitat. Stable isotope analyses (δ¹³C and δ¹⁵N) were conducted to examine the organic matter sources and potential energy flow pathways at a created intertidal oyster (Crassostrea ariakensis; hereinafter, oyster) reef and adjacent salt marsh in the Yangtze River estuary, China. The δ¹³C values of most reef-associated species (22 of 37) were intermediate between those of suspended particle organic matter (POM) and benthic microalgae (BMI), indicating that both POM and BMI are the major organic matter sources at the created oyster reef. The sessile and motile macrofauna colonizing the reef make up the main prey of transient nekton (e.g., spotted sea bass, Asian paddle crab, and green mud crab), thus suggesting that the associated community was most important in supporting higher trophic levels as opposed to the direct dietary subsidy of oysters. The created oyster reef consistently supported higher trophic levels than the adjacent salt marsh habitat due to the dominance of secondary consumers. These results indicate that through the provision of habitat for associated species, created oyster reefs provide suitable habitat and support a higher average trophic level than adjacent salt marsh in the Yangtze River estuary.     

Food habits of red drum and spotted seatrout in a restored mangrove impoundment

Benthic resource utilization by, red drum (Sciaenops ocellatus) and spotted seatrout (Cynoscion nebulosus) was studied in a restored, mangrove-rimmed impoundment (Cabbagehead Bayou) of Upper Tampa Bay, Florida, and in a nearby, natural site of unaltered tidal regime (Double Branch Bay). Diets of fish captured from August 1990 to May 1992 were determined from stomach content analysis. Simultaneously, food availability was evaluated by sampling benthic macroinvertebrates, mobile decapods, and small fish. Red drum and spotted seatrout utilized the restored habitat 1 yr after it was opened to tidal influence. Both species also were collected in the natural mangrove. Although there were noted differences in benthic assemblages between the two sites, red drum and spotted seatrout exhibited flexibility in diet, feeding on abundant and accessible prey. The high abundance of microcrustacea, such as amphipods, on detritus accumulated in the restored habitat constituted a main food resource for both fish species. Major food items in the diet of small (<200 mm) red drum were amphipods, mysids, and nereid and arenicolid polychaetes. Large (200–590 mm) red drum fed on polychaetes, xanthid crabs, palaemonid shrimp, and small fishes. Spotted seatrout preyed primarily upon mysids, shrimp, and small fishes, and to a lesser extent, upon a nereid polychaete. Our findings on fish feeding in a restored mangrove impoundment indicated that the detrital-associated benthic community is utilized by reinvading fish within a short time period, suggesting that not only habitat but food resources were augmented by the reopening of this wetland.     

Investigating the Functional Role of an Artificial Reef Within an Estuarine Seascape: a Case Study of Yellowfin Bream (<Emphasis Type="Italic">Acanthopagrus australis</Emphasis>)

Estuaries contain mosaic habitats which support fish across different life stages. Artificial reefs represent a form of habitat enhancement which can provide additional structure for fishes and improve fishing opportunities, but the role of artificial reefs within the broader estuarine seascape has not been extensively studied. We used a VEMCO Positioning System (VPS) to monitor the fine-scale movements of yellowfin bream (Acanthopagrus australis, referred to as Bream), an estuarine predator and important recreational species. Fish were implanted with acoustic tags with accelerometer sensors (to measure relative fish activity), and their movements monitored on an artificial reef and adjacent habitats. Elevated activity patterns during crepuscular periods indicated that foraging was likely occurring over a large seagrass bed adjacent to the artificial reef system. Alternatively, lower activity was observed when fish were on the artificial reef, which may reflect the role of this habitat as a refuge, or that alternative foraging strategies were being employed. All fish exhibited a high degree of fidelity to the artificial reef on which they were tagged, and there was minimal movement among other reef groups within the array. There was extensive overlap in space use contours for smaller fish on the seagrass edge, but no overlap for larger fish that also tended to forage further afield. These findings have implications for the way in which artificial reefs support fish production, especially the importance of connectivity with other key habitats within the estuarine seascape.     

Spatial Distribution–Abundance Relationships in Juvenile (Age 0) Red Drum (<Emphasis Type="Italic">Sciaenops ocellatus</Emphasis>) and Spotted Seatrout (<Emphasis Type="Italic">Cynoscion nebulosus</Emphasis>). I: Influence of Freshwater Inflow

We examined relationships between freshwater inflow and population abundance and distribution of two size classes (15–50 mm Standard Length and 51–100 mm SL) of spotted seatrout (Cynoscion nebulosus) and red drum (Sciaenops ocellatus) over our 13-year study covering shallow waters of Tampa Bay and several adjacent rivers. Juveniles of seatrout were relatively abundant most years and broadly distributed primarily in the bay. Freshwater inflow was positively related to spatial distribution and abundance of smaller juveniles of seatrout, yet it was unrelated to the larger size class. Red drum juveniles were less abundant and narrowly distributed primarily within the rivers. Lower portions of the Alafia, Little Manatee, and Manatee Rivers—a combined area comprising only 2 % of the study area—contained 40–96 % of the annual population. Freshwater inflow was positively related to population distribution and abundance of larger red drum suggesting that reductions in inflow can reduce both habitat area and populations. Inflow was related to abundance but not distribution of the smaller red drum suggesting that inflow may increase habitat quality but perhaps not quantity at this earlier growth stage. Comparing spatial and population dynamics of multiple species can help prioritize them for conservation and management issues, such as freshwater inflow regulation. Reductions in inflow reduce populations and spatial distribution of at least one juvenile life stage of these two fishery species. Due to their narrow spatial distribution in the rivers, juveniles of red drum appear to be particularly vulnerable to modification of the riverine environment.     

Early life history of spotted seatrout,Cynoscion nebulosus (Pisces: Sciaenidae), in Tampa Bay,Florida

During two years of sampling, 747 larval and 1,379 juvenile spotted seatrout,Cynoscion nebulosus, were collected in Tampa Bay, Florida; 93% were less than 75 mm SL. Length-frequency distributions and otolith analysis showed that spawning took place from early April until late October. Two seasonal spawning peaks (spring and summer) were made up of many smaller peaks, apparently timed with moon phases. Plankton samples contained larvae that measured up to about 7 mm SL (17 d old). Larvae collected from an upper bay station were less numerous and larger than those collected at other stations. The presence of small larvae from middle and lower bay stations indicated that spawning probably took place from the middle bay to nearshore Gulf waters. Juveniles used seagrass beds as their major habitat, but they were also found in unvegetated backwaters. Spotted seatrout grew to about 35 mm SL in 2 months, 84 mm SL in 4 months, and 140 mm SL in 6 months. Eighty-five percent of the alimentary tracts in larvae were empty; those with food contained primarily copepods. Eleven percent of the stomachs of juveniles were empty. Fish and shrimp were the most important food groups in the diets of fish >15 mm SL. Intraspecific comparisons of diets showed high dietary overlap between larval fish and those measuring 8–15 mm SL and among size classes >15 mm SL.     

Habitat use and movement of the mummichog (<Emphasis Type="Italic">Fundulus heteroclitus</Emphasis>) in a restored salt marsh

The mummichog,Fundulus heteroclitus, is one of the most abundant macrofaunal components of salt marsh ecosystems along the east coast of the United States. During April–November 1998, we determined the habitat use and movement patterns of young-of-the-year (YOY) and adult mummichogs in a restored marsh, formerly a salt hay farm, and an adjacent creek in order to expand our understanding of the ecology of the species and evaluate the success of the restoration. Four major fish habitat types (large first-order natural creek, second-order created creek, linear drainage ditch, and marsh surface) were identified within the study site. Patterns of relative abundance and mark and recapture using coded wire tags were used to determine the habitat use, tidal movements, home range, and site fidelity of the species within these habitat types. A total of 14,784 fish, ranging from 20–100 mm SL, were captured with wire mesh traps and tagged, and 1,521 (10.3%) fish were recaptured. A variety of gears were used to attempt to recapture fish across all habitat types, including wire mesh traps, push nets, and otter trawls. Based on abundance and recaptures of tagged fish, the YOY and adults primarily used the shallow subtidal and intertidal areas of the created creek, the intertidal drainage ditches, and the marsh surface of the restored marsh but not the larger, first-order natural creek. At low tide, large numbers were found in the subtidal areas of the created creek; these then moved onto the marsh surface on the flooding tide. Elevation, and thus hydroperiod, appeared to influence the microscale use of the marsh surface. We estimated the home range of adults and large YOY (20–100 mm SL) to be 15 ha at high tide, which was much larger than previously quantified. There was strong site fidelity to the created creek at low tide. The habitat use and movement patterns of the mummichog appeared similar to that reported for natural marshes. Coupled with the results of other studies on the feeding, growth, and production of this species in this restoreh, the species appeared to have responded well to the restoration.     

Spatial Distribution-Abundance Relationships in Juvenile (Age-0) Red Drum (<Emphasis Type="Italic">Sciaenops Ocellatus</Emphasis>) and Spotted Seatrout (<Emphasis Type="Italic">Cynoscion Nebulosus</Emphasis>). II: Influence of Major Disturbances

Local species populations that are more numerically abundant and occupy a greater proportion of the landscape relative to other species often recover more quickly (i.e., are more resilient) following local-scale environmental perturbations. In a companion study, we found that seatrout juvenile populations were distributed more broadly across Tampa Bay, Florida, and numerical abundance was generally much higher than those of similar-sized red drum, suggesting that spotted seatrout may also be generally more resilient to population declines than red drum. Following major population declines over a 12-year period (1996–2008), we found that larger juveniles of seatrout (51–100 mm standard length) simultaneously gained numerical abundance and broadened their spatial distribution generally within the next year. Population recovery in the same size of juvenile red drum generally took multiple years, and distribution and abundance increases were not always concurrent during the recovery period. Despite their overall higher abundance and broader spatial distribution, the smaller-sized juveniles of spotted seatrout (15–50 mm standard length (SL)) did not always recover more quickly from population declines compared with similar-sized red drum. Populations of the smaller-sized juveniles of both species often took multiple years to recover and showed non-concurrent increases in distribution and abundance during recovery. Despite their relatively narrow spatial distribution, juveniles of red drum may increase their overall resilience to local environmental perturbations by occupying multiple isolated patches across the Tampa Bay landscape. Monitoring dynamics of numerical abundance and spatial distribution may be helpful in gauging relative population resilience to facilitate overall management of these fishery populations.     

Temporal variation and patchiness of zooplankton around a restored oyster reef

Zooplankton abundance and distribution patterns were determined for six seasonally important invertebrate taxa (bivalve veligers, gastropod veligers, polychaete larvae, barnacle nauplii, calanoid copepod adults and nauplii) and a diurnally important taxon (decapod zoea) around a restored oyster reef in the Piankatank River, Virginia. Data were collected on spatial scales of hundreds of meters and seasonal (May through October), diel (day-night), and tidal (3 h) temporal scales. Significant seasonal and diel patterns in abundance were observed for all taxa. Tidal influences alone appear to be less important than seasonal and diel patterns for most taxa but the interation of tidal and diel cues may have caused the observed diel zooplankton distribution patterns in both June and August 1996. Zooplankton taxa around the oyster reef were distributed non-randomly (patchily) regardless of their horizontal location with regard to the reef. Seasonal pulses in zooplankton abundance relate directly to life history patterns and reproductive cycles for individual taxa. Reef benthic fauna have the capacity to directly influence the composition and absolute abundance of the overlying zooplankton community and indirectly influence oyster reef community trophic dynamics.     

Effects of a Persistent Red Tide (<Emphasis Type="Italic">Karenia brevis</Emphasis>) Bloom on Community Structure and Species-Specific Relative Abundance of Nekton in a Gulf of Mexico Estuary

An unusually persistent red tide event caused by the ichthyotoxic dinoflagellate Karenia brevis occurred along the southwest Florida coast in 2005. Extensive fish kills led to concerns regarding the effect of red tide on fish populations and their subsequent recruitment. Community structure differences were analyzed for all small- and large-bodied nekton species collected by fisheries-independent monitoring from 1996 through 2006. Indices of abundance of five economically important fish species were also calculated from this time period. A significant change in small- and large-bodied nekton community structure was apparent from summer 2005 through spring 2006. Declines in the annual recruitment of juvenile spotted seatrout (Cynoscion nebulosus), sand seatrout (Cynoscion arenarius), and red drum (Sciaenops ocellatus) were evident in 2005 and 2006. Species-specific subadult and adult abundances, however, were consistent with those of previous years. These community shifts and species-specific declines appear to be associated with the red tide event.     

Sediment Suspension and Deposition Across Restored Oyster Reefs of Varying Orientation to Flow: Implications for Restoration

The eastern oyster, Crassostrea virginica, is a prominent ecosystem engineer, whose reefs exhibit strikingly consistent morphologies at multiple spatial scales throughout its North American range. These distinct morphologies are thought to form by interactions of nascent reef structures with hydrodynamics. We carried out two field studies to determine if historical reef configurations applied in a restoration context would improve reef persistence and restoration outcomes. We collected seabed and water column observations across constructed reefs of three orientations representative of those found historically throughout the oyster’s range: parallel or perpendicular to tidal currents or circular. Areas adjacent to reefs were sites of fine sediment trapping, with lower flow velocities, evidence of particle settling, and more fine sediments on the seabed relative to off-reef reference sites. The water column above the reef crest exhibited higher acoustic backscatter, higher flow velocities, and larger particles in suspension, consistent with local erosion of flocculated fine sediment from the reef crest. Perpendicular reefs produced conditions that were more conducive to reef persistence and improved oyster performance, including high flow velocities and enhanced resuspension of sediments from the reef, compared to parallel or circular reefs. Particle trapping in areas between reefs has the potential to inhibit reef growth between existing reef structures, providing support for hypotheses of landscape-scale reef pattern formation. Oyster reef restoration efforts can benefit from this improved understanding of biophysical interactions arising from reef orientation that contribute to sediment dynamics on constructed oyster reefs.     

Nekton use of subtidal oyster shell habitat in a Southeastern U.S. estuary

Subtidal accumulations of oyster shell have been largely overlooked as essential habitat for estuarine nekton. In southeastern U.S. estuaries, where oyster reef development is mostly confined to the intertidal zone, eastern oyster (Crassostrea virginica) shell covered bottoms are often the only significant source of hard subtidal structure. We characterized and quantified nekton use of submerged shell rubble bottoms, and compared it to use of intertidal reefs and other subtidal bottoms in the North Inlet estuary, South Carolina. Replicate trays (0.8 m²) filled with shell rubble were deployed in shallow salt marsh creeks, and were retrieved after soak times of 1 to 25 days from May 1998 to March 2000. Thirty six species of fishes, representing 21 families, were identified from the 455 tray collections. Water temperature, salinity, soak time and the presence of a shell substrate all affected the catch of fishes in the trays. Catches during the warmer months were two to five times greater than those during the winter. Fishes were present in 98% of the trays with an overall average of 5.7 fish m^?2. The assemblage was numerically dominated by small resident species including naked goby (Gobiosoma bose), oyster toadfish (Opsanus tau), and crested blenny (Hypleurochilus geminatus). Transient species accounted for 23% of all individuals and 62% of the total biomass due to the presence of relatively large sheepshead (Archosargus probatocephalus) and black sea bass (Centropristis striata). Both the transient and resident species displayed distinct periods of recruitment and rapid growth from April to October. Lower abundances of juvenile gobies and blennies during 1998 were attributed to long periods of depressed salinity caused by high rainfall associated with El Niño conditions in spring. Crabs and shrimps, which were often more abundant than the fishes, accounted for comparable biomass in the tray collections. In comparisons of subtidal tray and trawl catches, trays yielded 10 to 1,000 fold higher densities of some demersal fish groups. Comparisons of intertidal and subtidal gear catches indicated that many species remain in the subtidal shell bottom at all stages of the tide. This study suggests that subtidal shell bottom may be essential fish habitat for juvenile seabass, groupers, and snappers and that it may be the primary habitat for a diverse assemblage of ecologically important resident fishes and crustaceans. Given the high levels of nekton use and the areal extent of oyster shell bottoms in eastern U.S. and Gulf estuaries, increased attention to protection and restoration of these areas appears justified.     

Seasonal and Spatial Variations in Fish and Macroinvertebrate Communities of Oyster and Adjacent Habitats in a Mississippi Estuary

In Grand Bay National Estuarine Research Reserve (Grand Bay NERR), Mississippi, we used quantitative drop sampling in three common shallow estuarine habitats—low profile oyster reef (oyster), vegetated marsh edge (VME), and nonvegetated bottom (NVB)—to address the dearth in research comparing nekton utilization of oyster relative to adjacent habitats. The three habitats were sampled at two distinct marsh complexes within Grand Bay NERR. We collected a total of 633 individual fishes representing 41 taxa in 22 families. The most diverse fish family was Gobiidae (seven species) followed by Blennidae and Poeciliidae (three species each). We collected a total of 2,734 invertebrates representing 24 taxa in 11 families. The most diverse invertebrate family was Xanthidae (six species) followed by Palaemonidae (five species). We used ordination techniques to examine variation in species relative abundance among habitats, seasons, and sampling areas, and to identify environmental gradients correlated with species relative abundances. Our resulted indicated that oyster provided a similarly complex and important function as the adjacent VME. We documented three basic trends related to the importance of oyster and VME habitats: 1) Oyster and VME provide habitat for significantly more species relative to NVB, 2) Oyster and VME provide habitat for rare species, and 3) Several species collected across multiple habitats occurred at higher abundances in oyster or VME habitat. We also found that salinity, temperature, and depth were associated with seasonal and spatial shifts in nekton communities. Lastly, we found that the relative location of the two marsh complexes we studied within the context of the whole estuary may also explain some of the temporal and spatial differences in communities. We conclude that oyster habitat supported a temporally diverse and spatially distinct nekton community and deserves further attention in research and estuarine conservation efforts.     

A comparison of mercury in estuarine fish between Florida Bay and the Indian River Lagoon, Florida, USA

Concentrations of mercury (Hg) in fish were compared between two Florida estuaries, the Indian River Lagoon and Florida Bay. The objective was to determine if differences in Hg concentration exist and to attempt to relate those differences to sources of Hg. Five hundred and thirteen estuarine fish were collected and analyzed for Hg concentration. Fish species collected were black drum, bluefish, bonnethead shark, common snook, crevalle jack, gafftopsail catfish, gray snapper, Mayan cichlid, pompano, red drum, sheepshead, southern flounder, spadefish, and spotted seatrout. Analysis of variance of species-specific Hg data among the three defined regions of eastern and western Florida Bay and the Indian River Lagoon substantiated regional differences. Proximity to known anthropogenic sources of Hg appeared to be a significant factor in the distribution of Hg concentration among the fish collected. Sufficient numbers of crevalle jack, gray snapper, and spotted seatrout were collected to permit statistical analysis among regions. Hg concentrations in all three of these species from eastern Florida Bay were higher than those collected in the other two areas. A major fraction of the estuarine fish collected in eastern Florida Bay exceeded one or more State of Florida or U.S. Food and Drug Administration fish consumption health advisory criteria. In general, fish from western Florida Bay contained less Hg than those from the Indian River Lagoon, and fish from the Indian River contained less Hg than those from eastern Florida Bay. Crevalle jack from all areas and spotted seatrout from Florida Bay were placed on a consumption advisory in Florida. Detailed study of Florida Bay food web dynamics and Hg biogeochemical cycling is recommended to better understand the processes underlying the elevated Hg levels in fish from eastern Florida Bay. This information may be vital in the formulation of appropriate strategies in the ongoing South Florida restoration process.     

Faunal utilization of created intertidal eastern oyster (Crassostrea virginica) reefs in the southeastern United States

Oyster cultch was added to the lower intertidal marsh-sandflat fringe of three previously createdSpartina alterniflora salt marshes. Colonization of these created reefs by oysters and other select taxa was examined. Created reefs supported numerous oyster reef-associated faunas at equivalent or greater densities than adjacent natural reefs. Eastern oyster (Crassostrea virginica) settlement at one site of created reef exceeded that of the adjacent natural reefs within 9 mo of reef creation. After only 2 yr, harvestable-sizeC. virginica (>75 mm) were present in the created reefs along with substantial numbers ofC. virginica clusters. The created reefs also had a higher number of molluscan, fish, and decapod species than the adjacent natural reefs. After 2 yr the densities ofC. virginica, striped barnacle (Balanus amphitrite), scorched mussel (Brachidontes exustus), Atlantic ribbed mussel (Geukensia demissa), common mud crab (Panopeus herbstii), and flat mud crab (Eurypanopeus depressus) within the created reefs were equivalent to that of adjacent natural reefs. From these data it is evident that created oyster reefs can quickly acquire functional ecological attributes of their natural counterparts. Because the demand for oysters continues to increase in the face of dwindling natural resources, habitat creation techniques need to evolve and these approaches need to consider the ancillary ecological benefits reef creation may provide. Reef function as well as physical and ecological linkages of oyster reefs to other habitats (marsh, submerged aquatic vegetation, and bare bottom) should be considered when reefs are created in order to provide the best use of resources to maintain the integrity of estuarine systems.     

Mechanisms of marsh habitat alteration due to<Emphasis Type="Italic">Phragmites</Emphasis>: Response of young-of-the-year mummichog (<Emphasis Type="Italic">Fundulus heteroclitus</Emphasis>) to treatment for<Emphasis Type="Italic">Phragmites</Emphasis> removal

In recent decades, marshes naturally dominated bySpartina spp. have been replaced byPhragmites australis throughout the northeastern United States. We suggest that early in this invasion there was little effect on the fish fauna. As the invasion proceeds, the marsh surface habitat became more altered (i.e., elevated, flattened, reduced water-filled depressions, and reduced standing water), which resulted in a reduction of feeding, reproduction, and nursery function for fishes, especiallyFundulus spp. These potential changes in marsh habitat and function have resulted in numerous attempts to removePhragmites and restoreSpartina spp. To evaluate the response of marsh surface fishes toPhragmites treatment, we examined fish use in the brackish water reaches of Alloway Creek in the Delaware Bay estuary. ReferencePhragmites habitats were compared with referenceSpartina alterniflora-dominated habitats and sites treated (1996–1998) to removePhragmites to restore former vegetation (i.e., restored, now comprised of 100%Spartina). Fish were sampled with an array (n=9 at each site) of shallow pit traps (rectangular glass dishes, 27.5×17.5×3.7 cm). Small individuals (mean=17.5, 5–45 mm TL) dominated all pit trap collections. Fish abundance was highest at the restored (catch per unit effort [CPUE]=2.16) andSpartina (CPUE=0.81) sites with significantly lower values atPhragmites (CPUE=0.05) habitats. Samples were dominated by young-of-the-year mummichog,Fundulus heteroclitus (98% of total fish, n=631). The only other fish species collected was spotfin killifish,Fundulus luciae (2% of total catch, n=14), which was only present in restored andSpartina habitats. These observations suggest that the restored marsh is providing habitat (water-filled depressions on the marsh surface) for young-of-the-yearFundulus spp. These marshes are responding favorably to the restoration based on the much greater abundance of fish in restored versusPhragmites habitats and the overall similarity between restored andSpartina habitats.     

Habitat partitioning between the xanthid crabsPanopeus herbstii andEurypanopeus depressus on intertidal oyster reefs (Crassostrea virginica) in southeastern North Carolina

The abundances of the xanthid crabsPanopeus herbstii andEurypanopeus depressus were examined relative to surface oyster shell cover, surface oyster cluster volume, subsurface shell content, substrate sand and silt composition, and oyster reef elevation. During August 1986 through July 1987, xanthid crabs were collected monthly from twelve 0.25 m²×15 cm deep quadrats, during low tide, from intertidal oyster reefs in Mill Creek, Pender County, North Carolina, USA, with respective quadrat details recorded. The abundance ofP. herbstii, and to a lesser degreeE. depressus, was positively correlated with surface shell cover. The abundance ofE. depressus, and to a lesser degreeP. herbstii, was positively correlated with surface cluster volume. The majority ofP. herbstii inhabited the subsurface stratum of the oyster reef, whereas the majority ofE. depressus inhabited the cluster stratum. Seasonality (i.e., temperature) appeared to influence the strata habitation of both species, with a higher incidence of cluster habitation during warmer months and a lower incidence during colder months. Crab abundance was not related to other factors examined, such as subsurface shell, substrate sand and silt composition, or elevation within the oyster reef. The analyses show thatP. herbstii andE. depressus have partitioned the intertidal oyster reef habitat, withE. depressus exploiting surface shell clusters andP. herbstii the subsurface stratum.     

Hydroacoustics as a tool for assessing fish biomass and size distribution associated with discrete shallow water estuarine habitats in Louisiana

We developed a relative index of fish biomass and size distribution in ultra-shallow waters (< 2 m) of Barataria Bay, Louisiana, based on the comparison of horizontal hydroacoustic data with gill net and push trawl catches in an effort to understand the role that habitat plays in both fish biomass and distribution. Exclosure net experiments indicated that the contribution of acoustic backscattering from sources other than fishes were negligible. Split-beam transducer, gill net, and push trawl sampling were conducted concurrently in Barataria Bay to provide information on fish composition and length distributions and for comparisons among gear types. Results suggest that acoustic fish biomass was generally higher in the low salinity stations and lower at the high salinity stations, at least in March 2004. We observed a greater mean length of fishes associated with oyster shell habitats when compared to adjacent sand-mud habitats. This paper demonstrates the utility of hydroacoustics as a tool to quantify relative acoustic fish biomass and size distribution associated with common estuarine habitats in ultra-shallow waters. This study also illustrates the potential of using acoustics for augmenting traditional sampling procedures.     

Habitat associations of estuarine species: Comparisons of intertidal mudflat, seagrass (Zostera marina), and oyster (Crassostrea gigas) habitats

The complexity of habitat structure created by aquatic vegetation is an important factor determining the diversity and composition of soft-sediment coastal communities. The introduction of estuarine organisms, such as oysters or other forms of aquaculture, that compete with existing forms of habitat structure, such as seagrass, may affect the availability of important habitat refugia and foraging resources for mobile estuarine fish and decapods. Fish and invertebrate communities were compared between adjacent patches of native seagrass (Zostera marina), nonnative cultured oyster (Crassostrea gigas), and unvegetated mudflat within a northeastern Pacific estuary. The composition of epibenthic meiofauna and small macrofaunal organisms, including known prey of fish and decapods, was significantly related to habitat type. Densities of these epifauna were significantly higher in structured habitat compared to unstructured mudflat. Benthic invertebrate densities were highest in seagrass. Since oyster aquaculture may provide a structural substitute for seagrass being associated with increased density and altered composition of fish and decapod prey resources relative to mudflat, it was hypothesized that this habitat might also alter habitat preferences of foraging fish and decapods. The species composition of fish and decapods was more strongly related to location within the estuary than to habitat, and fish and decapod species composition responded on a larger landscape scale than invertebrate assemblages. Fish and decapod species richness and the size of ecologically and commercially important species, such as Dungeness crab (Cancer magister), English sole (Parophrys vetulus), or lingcod (Ophiodon elongatus), were not significantly related to habitat type.     

Foraging by juvenile salmon in a restored estuarine wetland

The functional value of a restored estuarine wetland as a foraging area for juvenile chum salmon (Oncorhynchus keta) and fall chinook salmon (O. tshawytscha) was evaluated during the spring seaward migrations of each species in 1987 and 1988. During both years, fish foraged selectively. While temporarily residing in the restored wetland, both salmon selected primarily chironomid insects (midge larvae, pupae, and adults) over all other organisms considered available prey. A detritus-based food chain (detritus-chironomids-juvenile chum salmon or chinook salmon) suggests that the restored wetland provides productive foraging habitat for migrating juvenile chum and fall chinook salmon during their early residency in the estuary. However, the equivalency of foraging in restored or created estuarine wetlands compared to foraging in altered riverine or natural habitats remains untested.     

Recruitment of the Crabs Eurypanopeus depressus, Rhithropanopeus harrisii, and Petrolisthes armatus to Oyster Reefs: the Influence of Freshwater Inflow

Oyster reefs provide structural habitat for resident crabs and fishes, most of which have planktonic larvae that are dependent upon transport/retention processes for successful settlement. High rates of freshwater inflow have the potential to disrupt these processes, creating spatial gaps between larval distribution and settlement habitat. To investigate whether inflow can impact subsequent recruitment to oyster reefs, densities of crab larvae and post-settlement juveniles and adults were compared in Estero Bay, Florida, over 22 months (2005–2006). Three species were selected for comparison: Petrolisthes armatus, Eurypanopeus depressus, and Rhithropanopeus harrisii. All are important members of oyster reef communities in Southwest Florida; all exhibit protracted spawning, with larvae present throughout the year; and each is distributed unevenly on reefs in different salinity regimes. Recruitment to oyster reefs was positively correlated with bay-wide larval supply at all five reefs examined. Species-specific larval connectivity to settlement sites was altered by inflow: where connectivity was enhanced by increased inflow, stock–recruitment curves were linear; where connectivity was reduced by high inflows, stock–recruitment curves were asymptotic at higher larval densities. Maximum recruit density varied by an order of magnitude among reefs. Although live oyster density was a good indicator of habitat quality in regard to crab density, it did not account for the high variability in recruit densities. Variation in recruit density at higher levels of larval supply may primarily be caused by inflow-induced variation in larval connectivity, creating an abiotic simulation of what has widely been regarded as density dependence in stock–recruitment curves.