Environmental influences on the long-term fluctuations in the abundance of gadoid species during estuarine residence

Samples taken regularly from the intake screens of West Thurrock power station between January 1977 and November 1992 were used to examine physico-chemical factors influencing the abundance of Gadidae species (poor cod, Trisopterus minutus; pouting, Trisopterus luscus; and whiting, Merlanguis merlangus) in the Thames estuary. Most sampled fish were age-0 and followed a dominant pattern of seasonal occurrence. Multiple regression was used to model variations in sample abundance in relation to fluctuations in estuarine environmental variables, interactions between environmental variables and seasonal factors. Model results were used to examine hypotheses concerning the relative importance of temperature, salinity, prey availability and seasonal factors as determinants of estuarine gadoid abundance. Temperature was the most important determinant of species sample abundance and negatively related to sample abundance in all cases. Salinity was a major determinant of pouting abundance and a minor determinant of whiting abundance, with seasonal factors significantly influencing the occurrence of all species. Crangon abundance was a minor determinant of whiting and poor cod abundance. Interactions between environmental variables played a minor role in determining the sample abundance of a single species, pouting. Determinants of Gadidae species abundances in the Thames appear to be a complex mix of seasonal and environmental influences, with seasonal influences determining the dominant cyclical pattern and influences of temperature having the greatest effects on short-term variations in the pattern.     

Environmental control on early life stages of flatfishes in the Lima Estuary (NW Portugal)

Several flatfishes spawn in oceanic waters and pelagic larvae are transported inshore to settle in the nursery areas, usually estuaries, where they remain during their juvenile life. Nursery areas appear as extremely important habitats, not only for juveniles but also for the earlier planktonic larval fish. Yet, the majority of nursery studies tend to focus only on one development stage, missing an integrative approach of the entire early life that fishes spent within a nursery ground. Thus, the present study assessed the influence of environmental parameters on the dynamics of the larval and juvenile flatfishes, throughout their nursery life in the Lima Estuary. Between April 2002 and April 2004, fortnightly subsurface ichthyoplankton samples were collected and juveniles were collected from October 2003 until September 2005. Larval assemblages comprised nine flatfish species, while only six were observed among the juvenile assemblages. Solea senegalensis and Platichthys flesus were the most abundant species of both fractions of the Lima Estuary flatfishes. Larval flatfish assemblages varied seasonally, without relevant differences between lower and middle estuary. Platichthys flesus dominated the spring samples and summer and autumn periods were characterized by an increase of overall abundance and diversity of larval flatfishes, mainly S. senegalensis, associated with temperature increase and reduced river flow. On the contrary, during the winter abundance sharply decreased, as a consequence of higher river run-off that might compromised the immigration of incompetent marine larvae. Juvenile flatfishes were more abundant in the middle and upper areas of the estuary, but the species richness was higher near the river mouth. Sediment type, distance from the river mouth, salinity, temperature and dissolved oxygen were identified as the main environmental factors structuring the juvenile flatfish assemblages. Juveniles were spatially discrete, with the most abundant species S. senegalensis and P. flesus associated with the middle and upper estuary, while the remaining species were associated with the lower estuarine areas. The larval fraction exhibited distinct dynamics from the juvenile estuarine flatfish community. Larval flatfishes showed a strong seasonal structure mainly regulated by biological features as the spawning season and also by seasonal variations of water characteristics. On the other hand, juvenile flatfishes were markedly controlled by site specific characteristics such as sediments structure, distance from the river mouth and salinity regime. The present study emphasized the idea that the environmental control varies throughout the ontogenetic development, stressing the importance of integrating all the early life of a species in flatfish nursery studies.     

Relative importance of estuarine flatfish nurseries along the Portuguese coast

The relative importance of nursery areas and their relationships with several environmental variables were evaluated in nine estuarine systems along the Portuguese coast based on trawl surveys. Historical data were used to outline changes and trends in the nursery function of some of these estuaries over the past decades. The dominant flatfish species in Portuguese estuaries were Platichthys flesus (Linnaeus, 1758), Solea solea (Linnaeus, 1758), Solea senegalensis Kaup, 1858 and Monochirus hispidus Rafinesque, 1814, but their occurrence differed among the estuaries. P. flesus only occurred in estuaries north of the Tejo estuary (39°N), S. solea was quite rare along the southern Portuguese coast (south of 37°30′N), S. senegalensis occurred in estuaries throughout the coast, but its abundance varied considerably, and the occurrence of M. hispidus was limited to the Sado estuary and Ria Formosa. A Correspondence Analysis was performed to evaluate the relationships between flatfish species abundance and geomorphologic and hydrologic characteristics of estuaries (latitude, freshwater flow, estuarine area, intertidal area, mean depth and residence time). Abiotic characteristics (depth, temperature, salinity, sediment type) of nursery grounds of each flatfish species were also evaluated. Results showed that some estuaries along the Portuguese coast have nursery grounds used by several flatfish species (e.g. Ria de Aveiro, Sado estuary), while in other systems a segregation was noticed, with juveniles of different species occurring in distinct estuarine areas (e.g. Minho and Mondego estuaries). This emphasizes the relevance of niche overlap, but the potential for competition may be considerably minimized by differences in resource use patterns and by an extremely high abundance of resources. Peak densities of flatfishes recorded in nurseries areas along the Portuguese coast were within the range of values reported for other geographical areas. Inter-annual abundance variability of all the species in the Tejo and Sado estuaries was extremely high, with a drastic decrease in P. flesus in the Tejo estuary, probably related to higher water temperature in recent years due to global climate change.     

Recruitment of flatfish species to an estuarine nursery habitat (Lima estuary,NW Iberian Peninsula)

One of the present concerns of fish biologists involves defining and identifying nursery habitats in the context of conservation and resource management strategies. Fish nursery studies usually report upon nursery occupation during the latter juvenile stages, despite the fact that recruitment to nurseries can start early in life, during the larval phase. Here we investigated the use of a temperate estuarine nursery area, the Lima estuary (NW Portugal), by initial development stages of flatfish species before and after metamorphosis, integrating the larval and juvenile phases. The Lima estuarine flatfish community comprised twelve taxa, seven of which were present as pelagic larvae, six as juveniles and three as adults. There was a general trend of increasing spring–summer abundance of both larvae and juveniles, followed by a sharp winter decrease, mainly of larval flatfishes. The Lima estuary was used by Solea senegalensis, Platichthys flesus and Solea solea as a nursery area, with direct settlement for the two first species. In contrast, indirect settlement was suggested for S. solea, with metamorphosis occurring outside the estuarine area. Estuarine recruitment of S. senegalensis varied between years, with young larvae occurring in the estuary throughout a prolonged period that lasted 6–9 months, corroborating the protracted spawning season. P. flesus, the second most abundant species, exhibited a typical spring estuarine recruitment, without inter-annual variations. Developed larvae arrived in the estuary during spring, whereas the 0-group juveniles emerged in the following summer period. The present study contributes new insight to our understanding of the economically important S. senegalensis, and highlights the importance of integrating the planktonic larval phase into traditional flatfish nursery studies.     

Factors Affecting Long-term Trends in the Estuarine Abundance of Pogge (Agonus cataphractus )

Long-term data assembled from a power station on the Thames estuary were used to model fluctuations in the abundance of pogge (Agonus cataphractus) as a function of estuarine environmental, seasonal and prey availability variables using multiple regression. Temperature was the most important determinant of abundance, with seasonal variables and changes in the relative abundance of age-0 dab, Limanda limanda, possibly as prey, also holding important consequences for pogge abundance. Pogge abundance was also moderately influenced by: salinity, flow, salinity-flow interactions, changes in the relative abundance of Dover sole, Solea solea, and a trend variable. Regular patterns of seasonal (spring/winter) occurrences were associated with the use of warmer estuarine waters to optimize growth and reproductive potential and/or correlated with inshore spawning migrations and the availability of prey species. Both mechanisms suggest opportunistic use of estuarine habitats by pogge. Available temperature-abundance relationships further suggest a well-defined estuarine thermal niche, with an optimum at 9·5 °C. There remains a requirement for improved information on the biology of pogge and factors governing the population dynamics of this important estuarine species.     

Recruitment of flatfish species to an estuarine nursery habitat (Lima estuary, NW Iberian Peninsula)

One of the present concerns of fish biologists involves defining and identifying nursery habitats in the context of conservation and resource management strategies. Fish nursery studies usually report upon nursery occupation during the latter juvenile stages, despite the fact that recruitment to nurseries can start early in life, during the larval phase. Here we investigated the use of a temperate estuarine nursery area, the Lima estuary (NW Portugal), by initial development stages of flatfish species before and after metamorphosis, integrating the larval and juvenile phases. The Lima estuarine flatfish community comprised twelve taxa, seven of which were present as pelagic larvae, six as juveniles and three as adults. There was a general trend of increasing spring–summer abundance of both larvae and juveniles, followed by a sharp winter decrease, mainly of larval flatfishes. The Lima estuary was used by Solea senegalensis, Platichthys flesus and Solea solea as a nursery area, with direct settlement for the two first species. In contrast, indirect settlement was suggested for S. solea, with metamorphosis occurring outside the estuarine area. Estuarine recruitment of S. senegalensis varied between years, with young larvae occurring in the estuary throughout a prolonged period that lasted 6–9 months, corroborating the protracted spawning season. P. flesus, the second most abundant species, exhibited a typical spring estuarine recruitment, without inter-annual variations. Developed larvae arrived in the estuary during spring, whereas the 0-group juveniles emerged in the following summer period. The present study contributes new insight to our understanding of the economically important S. senegalensis, and highlights the importance of integrating the planktonic larval phase into traditional flatfish nursery studies.     

Carbon stable isotopes in estuarine sediments and their utility as migration markers for nursery studies in the Firth of Forth and Forth Estuary, Scotland

The stable carbon isotope ratios (δ¹³C) of the organic fraction of intertidal sediments in the Forth Estuary and the Firth of Forth, Scotland, were measured to determine if terrestrially derived carbon was present in the estuarine sediments. It was hypothesised that differences in the inputs from marine vs. terrestrial sources to the organic carbon of estuarine and marine sediments, as well as differences in ambient seawater stable oxygen isotope (δ¹⁸O) ratios between the estuary and the Outer Firth, would allow the use of these two stable isotopes as habitat markers for juvenile plaice (Pleuronectes platessa), to allow determination of nursery habitats. Muddy and sandy sediments from the estuary and sandy sediments from the Outer Firth were sampled and δ¹³C measured. Juvenile plaice were caught at two estuarine sites and at two Outer Firth sites and otoliths were removed for δ¹³C and δ¹⁸O analysis. The sandy sediments in the estuary showed a strong gradient of δ¹³C enrichment with distance down the estuary, while the muddy sediments showed a much shallower gradient. δ¹³C and δ¹⁸O measured in the carbonate of juvenile plaice otoliths showed no clear difference between otoliths of fish caught at one of the estuarine sites and at the two Outer Firth sites. However, the isotope ratios of both carbon and oxygen in plaice otoliths from the other estuarine site showed the expected trend of depletion in the heavier isotopes. While the measurements recorded here did not conclusively distinguish between otoliths from juveniles caught in the estuarine site and those caught in the other three sites, they show that stable isotopes have potential to distinguish between estuarine habitats with terrestrial carbon inputs, and coastal marine habitats with predominantly marine carbon inputs.     

Temporal and spatial distributions of larval fish assemblages in the Lima estuary (Portugal)

The Lima estuary (NW Portugal) is at the end of an international watershed, whose potential role as a spawning and nursery habitat for local fish populations has not been previously examined. To address this knowledge gap, fortnightly plankton surveys were conducted between April 2002 and April 2004. A total of 12,903 larvae, belonging to 20 families and 50 taxa were collected, with a mean abundance of 8 individuals per 100 m³. Gobiidae was the most abundant family comprising 71% of the total catch, followed by Clupeidae with 12% of the total. The top six abundant taxa (Pomatoschistus spp., Sardina pilchardus, Ammodytes tobianus, unidentified Clupeidae, Symphodus melops and Solea senegalensis) represented 91% of the total catch. Fish larvae showed a seasonal trend with abundances increasing during spring and summer. Diversity was generally low (H′ = 0.65) with high dominance of very few taxa. Near the ocean, the larval fish assemblage was more diverse due to the presence of marine species. In the lower estuary Channel zone, abundance was lower than in the two upstream salt marsh zones (North and South zones) and no statistical differences in abundance or diversity values were found within the latter zones. ANOSIM results demonstrated seasonal differences in the species composition, mainly during the second winter period which was typified by a pelagic species A. tobianus. The community in the Channel zone was more diverse in comparison with the other zones, which were highly dominated by the most abundant species. The spatial and temporal trends of the most abundant species were typical for Iberian estuaries, with the exception of the low abundance of anchovy larvae and the unusually high numbers and frequency of S. pilchardus, usually mentioned as accidental in estuarine systems. Overall results suggest that the Lima estuary larval fish assemblage has a strong seasonality and affinity to the salt marsh zones. It seems that spawning seasonality controlled the presence of temporary estuarine residents, while environmental aspects controlled the general abundance trend of the resident species.     

Structure and dynamics of distinct fish assemblages in three reaches (upper,middle and lower) of an open tropical estuary in Brazil

We collected fishes and environmental variables in three zones (upper, middle and lower) of a small open tropical estuary during flood tide. The aim was to test for differences in fish assemblages along a gradient from freshwater to marine waters and to detect any seasonal variation in fishes and environmental variables across these zones. A total of 111 species (18 in the upper, 50 in the middle and 66 in the lower estuary) were recorded, forming three distinct fish assemblages, with the family Eleotridae dominating in the upper, Gerreidae in the middle, and Sciaenidae in the lower estuary. Only two species (Geophagus brasiliensis in the upper and the middle zones, and Eucinostomus argenteus in the middle and the lower zones) composed more than 1% of the total number of individuals in more than a single zone. Short‐term (tidal) changes in salinity in the middle estuary were associated with different assemblages in the three estuarine zones, even in winter, when the differences in salinity are lowest between the middle and the lower zones. Seasonal variation in salinity was irrelevant, except in a protected sidewater lagoon in the middle estuary. Low salinity seasonal change may be related to the lack of seasonal variation in the structure of fish assemblages in all estuarine zones.     

Intertidal macroalgae and macroinvertebrates: Seasonal and spatial abundance patterns along an estuarine gradient

Quantitative sampling of the dominant intertidal epibiota was conducted seasonally along an estuarine gradient within the Great Bay Estuary System, New Hampshire, U.S.A. The abundance and zonation of the dominant macroorganisms varied with distance into the estuary. Replacement of marine by estuarine species occurred, and overall abundance and species richness decreased along the estuarine gradient. Zonation patterns within the inner estuary were primarily allied with substrata. Maximum abundance of invertebrates occurred in the mid-intertidal zone where a dense fucoid canopy provided habitat heterogeneity. Densities of epibiotic organisms decreased toward low water, especially in the inner estuary where hard substratum was limiting. Settlement blocks, introduced into the low intertidal zone, were dominated by barnacles and fucoid algae; after 16 months, the species composition on the settlement blocks resembled the adjacent community. Semibalanus balanoides settled in the spring, while Fucus vesiculosus var. spiralis exhibited low but constant settlement. Despite the physical rigors of the estuarine environment, only Semibalanus balanoides, Ilyanassa obsoleta and Spartina alterniflora showed significant seasonal changes in density. Thus, there are predictable and persistent epibiotic species assemblages within the intertidal zone of the Great Bay Estuary System.     

Environmental control of mesozooplankton community structure in the Seine estuary (English Channel)

This paper is the first to describe the spatio-temporal changes of mesozooplankton in the Seine estuary. Monthly samples were collected along the estuary in 1996 in order to analyse the seasonal changes of the mesozooplankton community and to identify the major environmental parameters that may influence the spatial distribution of zooplankton in this megatidal estuary. Statistical analysis (canonical correspondence analysis) showed that salinity was the main factor correlated with the longitudinal distribution of zooplankton. Marine species (Temora longicornis, barnacle larvae…) were located in the outer part of the estuary, while more oligohaline species (Eurytemora affinis) were recorded in the inner part of the estuary. A mixed zone was characterised by the presence of the neritic copepods Acartia spp. and Eurytemora affinis. The marine species (e.g. T. longicornis, Oikopleura dioica, Barnacle larvae) showed maximum abundance at the end of spring (June) while the most abundant estuarine species, E. affinis, peaked in late winter-spring and declined with the onset of summer. This copepod dominated the estuarine zooplankton throughout the year, and found in the Seine estuary very high favourable conditions to exhibit ultimate abundances (> 190 000 ind m^–3) which is one order of magnitude higher than those found in other European estuaries. It represented the main prey for major planktonivorous species such as suprabenthic and fish species located living in the upstream zone of the Seine estuary.     

Impact of climate and hydrology on juvenile fish recruitment towards estuarine nursery grounds in the context of climate change

Larvae of various coastal fish undergo immigration from spawning grounds towards estuarine nurseries. Several environmental factors can have an important impact on survival at this stage making it crucial for recruitment. Generalized linear models were applied in order to investigate the relation between river drainage, sea surface temperature (SST), NAO index and the North-South wind component intensity, over the two months prior to the estuarine colonization peak, and the densities of Platichthys flesus, Dicentrarchus labrax, Diplodus vulgaris and Diplodus bellottii in the nursery grounds based on a discontinuous historical dataset (from 1978 to 2006), for the Tagus estuary. The relation between SST over the 12 months prior to the estuarine colonization peak and fish densities in the nurseries was also investigated, as it integrates the periods of spawning stock maturation, spawning and larval immigration. While SST over the prior 12 months was negatively correlated with the abundance of P. flesus, it was positively correlated with the abundance of D. bellottii. Abundance of D. vulgaris was positively correlated with SST in the two months prior to the estuarine colonization peak, while the abundance of D. labrax was positively correlated with river drainage. The relations between SST and the abundance of P. flesus, a cold-water species with declining densities, and the subtropical species D. bellottii and D. vulgaris, which are increasing in abundance, are indicative of species abundance alterations related to climate warming. Dicentrarchus labrax will probably also be affected by climate change because of lowered precipitation and consequently river drainage.     

Intra- and interspecies comparison of energy flow in North Atlantic flatfish species by means of dynamic energy budgets

The quantitative aspects of growth and reproduction in four flatfish species (plaice, flounder, dab, sole) in terms of energy flow are described on the basis of a dynamic energy budget (DEB theory). This theory consists of general assumptions about energy uptake, storage and utilisation and describes an individual by two state variables: structure and reserve, whereby body size exerts its influence through the ratio between surface area and volume. Comparison between model estimates and field data shows that the DEB model successfully describes the energetics of growth and reproduction in a number of flatfish species. Differences between species could be captured in the same model using different parameter values. Intraspecific differences in growth between males and females are mainly caused by differences in maximum surface area-specific ingestion rates. Differences between species are reflected in the surface area-specific maximum ingestion rate, the energy partitioning over growth and reproduction, and in egg volume. According to these parameters at 283 K (10°C), the species could be ranked as follows: surface area-specific maximum ingestion rate (W m⁻²) plaice: 56.6; flounder: 54.5; sole: 45.1 and dab: 36.1 W m⁻². Fraction of energy allocated to reproduction (–): flounder: 0.35; plaice: 0.15; dab: 0.15 and sole 0.10. As a consequence of these differences in surface area-specific maximum ingestion rate and in the fraction of utilised energy allocated to reproduction, the gonad masses (g) of females of 0.5 kg wet mass differ considerably: flounder: 149 g; plaice: 86 g; sole: 70 g; and dab: 69 g. However, due to differences in egg size between species, the potential annual egg production shows a completely different pattern: dab: 2200 10³; flounder: 1560 10³; sole: 343 10³ and plaice: 130 10³ eggs.     

Ecological and biological strategies of Etropus crossotus and Citharichthys spilopterus (Pleuronectiformes:Paralichthyidae) related to the estuarine plume, Southern Gulf of Mexico

Differences in the biological and ecological strategies of two tropical flatfishes, Etropus crossotus (fringed flounder) and Citharichthys spilopterus (bay whiff) are discussed. The comparative analysis was based on the seasonal distribution of relative abundance of the two species and flatfish movements utilizing estuarine plume influenced areas as part of their life cycles. Growth parameters of the von Bertalanffy equation and recruitment were estimated (FISAT software) to compare life cycle patterns. The recruitment patterns illustrate the key difference between “estuarine-dependent” and “estuarine-related” nekton strategies. Both species have a short life cycle with a continuous recruitment activity. E. crossotus is an estuarine-related species, with two recruitment pulses (winter frontal season), in the estuarine plume on the shelf. C. spilopterus is an estuarine-dependent species, with a main recruitment pulse during the rainy season in the estuarine plume, and a residual secondary pulse inside the adjacent estuarine system (Terminos Lagoon). The results show that the ecological success of these tropical coastal marine flatfish, with similar biological patterns, is based upon the sequential use (in time and space) of estuarine plume influenced habitats, suggesting that fish migration to shallow waters is related to food availability changes as a strategy towards optimum recruitment.     

Fish settlement in the ocean vs. estuary: Comparison of pelagic larval and settled juvenile composition and abundance from southern New Jersey,U.S.A.

To describe the larval and juvenile fish fauna and to evaluate the relative contribution of the ocean and the estuary as settlement areas for benthic species, we compared the composition and abundance of larval fish supply to that of recently settled juvenile fishes in both ocean and an adjacent estuary habitats in southern New Jersey. The study was conducted from May to November 1992 in the Great Bay–Little Egg Harbor estuary (<1–8 m sampling depth) and on the adjacent inner continental shelf in the vicinity of Beach Haven Ridge (8–16 m). During the study more larvae nearing settlement (postflexion) were captured in the estuary than in the ocean. Settlement occurred earlier in the estuary than in the ocean perhaps under the influence of earlier, seasonal warming of estuarine waters. There appeared to be two spatial patterns of settlement in the study area based on the dominant species (n = 17) represented by a sufficient number of individuals (n ≥ 25 individuals). There were species that primarily settle in the estuary, as represented by both estuarine residents (n = 3) and transients (n = 4), and those that settle in both the estuary and the ocean (n = 10). However, there were no species whose larvae were present in the estuary yet settle in the ocean. The fact that many of the species settle in both the estuary and the ocean indicates an overlap between these habitats because, at least for some species, these habitats may function in the same way. Further resolution of fish settlement patterns, and its influence on recruitment will need to rely on synoptic comparisons between estuaries and the ocean over multiple years.     

Structural aspects of the surf-zone fish assemblage at King's Beach,Algoa Bay,South Africa: Long-term fluctuations

Regular collections of fish were obtained from the surf-zone at King's Beach, Algoa Bay. A total of 3970 fish, representing 50 species was caught with a coarse net and 16 857 fish, representing 37 species, were caught with a fine net. Predominant species were the blacktail, Diplodus sargus; the sand steenbras, Lithognathus mormyrus; the mullet, Liza richardsoni; the gorrie, Pomadasys olivaceum; the white stumpnose, Rhabdosargus globiceps; the sandshark, Rhinobatos annulatus; and the streepie, Sarpa salpa. No seasonal trends were discernible in the overall abundance or species diversity. The species composition of the dominant component of the fish assemblage varied considerably. This indicated instability in the community structure and cast doubts on the applicability of a classic community concept and the use of diversity indices. Neither classification nor correspondence analysis were of any use in identifying a characteristic species component. Multiple regression analysis indicated that short-term variations in wind conditions might be a primary determinant of fluctuations in abundance. The lack of seasonality in the community parameters may reflect the fact that short-term variability masks seasonal perturbations.     

The artisanal fishery of Cynoscion guatucupa in Argentina: Exploring the possible causes of the collapse in Bahía Blanca estuary

Cynoscion guatucupa Cuvier 1829 is a migratory pelagic fish species, which has a wide geographical distribution. It is the most important fishing resource for local communities in Bahía Blanca estuary and has been captured by artisanal fishermen since the 1900s. The industrial fleet has been fishing this species in the coastal area of Buenos Aires province since the 1950s, and, since 1970, landings have increased sharply. Between 2000 and 2004, the artisanal fishery in the estuarine waters of Bahía Blanca collapsed. Variations in total landings of the artisanal fleet might have arisen from the environmental variables within the estuary, fishing activity in the surrounding sea region, local pressure within the estuary and/or several other variables. Our results suggest that neither oceanographic parameters nor local pressure seem to have influenced the artisanal fishery of C. guatucupa in the estuarine region. Instead, this fishery seems to have been partially influenced by the increasing fishing pressure exerted by the industrial fishing fleet operating in open waters around the estuary. This study emphasizes the need to take into account fisheries data from both the estuarine environment and the surrounding sea region, particularly when designing management plans for the sustainable use of migrating fish resources.     

The effect of habitat and environmental history on otolith chemistry of barramundi Lates calcarifer in estuarine populations of a regulated tropical river

We examine the microchemistry of otoliths of cohorts of a fished population of the large catadromous fish, barramundi Lates calcarifer from the estuary of a large tropical river. Barramundi from the estuary of the large, heavily regulated Fitzroy River, north-eastern Australia were analysed by making transects of ⁸⁷Sr/⁸⁶Sr isotope and trace metal/Ca ratios from the core to the outer edge. Firstly, we examined the Sr/Ca, Ba/Ca, Mg/Ca and Mn/Ca and ⁸⁷Sr/⁸⁶Sr isotope ratios in otoliths of barramundi tagged in either freshwater or estuarine habitats that were caught by the commercial fishery in the estuary. We used ⁸⁷Sr/⁸⁶Sr isotope ratios to identify periods of freshwater residency and assess whether trace metal/Ca ratios varied between habitats. Only Sr/Ca consistently varied between known periods of estuarine or freshwater residency. The relationships between trace metal/Ca and river flow, salinity, temperature were examined in fish tagged and recaptured in the estuary. We found weak and inconsistent patterns in relationships between these variables in the majority of fish. These results suggest that both individual movement history within the estuary and the scale of environmental monitoring were reducing our ability to detect any patterns. Finally, we examined fish in the estuary from two dominant age cohorts (4 and 7 year old) before and after a large flood in 2003 to ascertain if the flood had enabled fish from freshwater habitats to migrate to the estuary. There was no difference in the proportion of fish in the estuary that had accessed freshwater after the flood. Instead, we found that larger individuals with of each age cohort were more likely to have spent a period in freshwater. This highlights the need to maintain freshwater flows in rivers. About half the fish examined had accessed freshwater habitats before capture. Of these, all had spent at least their first two months in marine salinity waters before entering freshwater and some did not enter freshwater until four years of age. This contrasts with the results of several previous studies in other parts of the range that found that access to freshwater swamps by larval barramundi was important for enhanced population productivity and recruitment.     

What role do beds of submerged macrophytes play in structuring estuarine fish assemblages? Lessons from a warm-temperate South African estuary

Habitat variability is one of the factors influencing species richness within estuarine systems, and a loss of habitat can result in a restructuring of the estuarine ichthyofaunal assemblage, particularly if these conditions persist over long time periods. The potential effects of the loss of extensive submerged macrophyte beds (Ruppia cirrhosa and Potamogeton pectinatus) on an estuarine fish assemblage were investigated through an analysis of a long-term seine net catch dataset from the temporarily open/closed East Kleinemonde Estuary, South Africa. Catch data for a 12-year period, encompassing six years of macrophyte presence and six years of macrophyte senescence, indicated that the loss of this habitat did not influence species richness but changes in the relative abundance of certain species were evident. A shift in dominance from vegetation-associated species to those associated with sandy environments (e.g. members of the family Mugilidae) was observed. However, species wholly dependent on macrophytes such as the critically endangered estuarine pipefish Syngnathus watermeyeri were only recorded during years when macrophyte beds were present, while vegetation-associated species such as the sparid Rhabdosargus holubi persisted at lower levels of relative abundance. The reduced abundance of all vegetation-associated fish species during years of macrophyte senescence was probably reflective of declining food resources resulting from the loss of macrophyte beds and/or increased vulnerability to predation. Submerged beds of aquatic plants are therefore important habitats within temporarily open/closed estuaries, South Africa’s dominant estuary type.     

Reduction of flatfish habitat as a consequence of the proliferation of an invasive mollusc

Coastal bays provide habitats for juveniles and adults of many marine species. Mont Saint-Michel Bay (MSMB, France) hosts a highly diversified fish community and constitutes one of the most important nursery grounds for many commercially exploited marine species, such as sea bass, flatfish, clupeids and rays in the English Channel. Besides, MSMB also suffers from the massive invasion of an exotic mollusc, the American slipper-limpet (Crepidula fornicata, L.). This species arrived four decades ago and now represents the main filter-feeder biomass in the bay (150 Mt), an order of magnitude larger than local farmed and natural shellfishes. Recent analyses underlined the impact of this small gastropod on the trophic structure of this bay and its negative influence on juvenile sole densities in the nursery grounds. The present study uses a geostatistical approach to explore the effect of the extension of the slipper-limpet on flatfish (common sole Solea solea, L.; plaice Pleuronectes platessa, L.; brill Scophthalmus rhombus, L. and flounder Platichthys flesus, L.) spatial distribution. Data collected during survey of the MSMB at the end of the 1970s and three decades later have been used to build interpolated maps of (1) slipper-limpet and (2) flatfish spatial distributions. Slipper-limpets were concentrated in a small area, in the western part of the MSMB, in the 1970s while today they occupy half of the bay. This rapid proliferation led to the decrease of available surface for flatfishes, which previously occupied the whole bay and are now restricted to its eastern part. The present study highlighted that the negative influence on fish habitat in MSMB is apparently more related to changes in the substratum than to trophic interactions. This invasion has possible consequences on flatfish population renewal at a large scale and may also damage other benthic or demersal species, such as rays.