Assessing the potential underestimation of sediment and nutrient loads to the Great Barrier Reef lagoon during floods

Much of the sediment and nutrient load to the Great Barrier Reef (GBR) lagoon happens during over bank floods, when discharge can be significantly underestimated by standard river gauges. This paper assesses the potential need for a flood load correction for 28 coastal rivers that discharge into the GBR lagoon. For each river, daily discharge was divided into flows above and below a 'flood' threshold to calculate the mean annual percentage flow above this threshold. Most GBR rivers potentially need a flood load correction as over 15% of their mean annual flow occurs above the minor flood level; only seven rivers need little/no correction as their flood flows were less than 5% of the mean annual flow. Improved assessment of the true load of materials to the GBR lagoon would be an important contribution to the monitoring and reporting of progress towards Reef Plan and associated marine load targets.     

River loads of suspended solids, nitrogen, phosphorus and herbicides delivered to the Great Barrier Reef lagoon

Degradation of coastal ecosystems in the Great Barrier Reef (GBR) lagoon, Australia, has been linked with increased land-based runoff of suspended solids, nutrients and pesticides since European settlement. This study estimated the increase in river loads for all 35 GBR basins, using the best available estimates of pre-European and current loads derived from catchment modelling and monitoring. The mean-annual load to the GBR lagoon for (i) total suspended solids has increased by 5.5 times to 17,000ktonnes/year, (ii) total nitrogen by 5.7 times to 80,000tonnes/year, (iii) total phosphorus by 8.9 times to 16,000tonnes/year, and (iv) PSII herbicides is 30,000kg/year. The increases in river loads differ across the 10 pollutants and 35 basins examined, reflecting differences in surface runoff, urbanisation, deforestation, agricultural practices, mining and retention by reservoirs. These estimates will facilitate target setting for water quality and desired ecosystem states, and enable prioritisation of critical sources for management.     

Sources of sediment to the Great Barrier Reef World Heritage Area

To reduce sediment exports discharging to the Great Barrier Reef (GBR), it is essential to identify the sources of exported sediment. We used modelling of spatial sediment budgets (the SedNet model) to identify sources and deposition of sediment as it is transported through river networks. Catchments with high levels of land clearing, cattle grazing and cropping show the largest increases in sediment export compared with natural conditions. Hillslope erosion supplies 63% of sediment to the rivers. Gully erosion and riverbank erosion are lower sources of sediment at the GBR catchment scale, but they are important in some catchments. Overall, 70% of sediment exported from rivers comes from just 20% of the total catchment area, showing that much of the problem can be addressed in a relatively small area. This is a much more manageable problem than trying to reduce erosion across the entire GBR catchment. Areas of high contribution are all relatively close to the coast because of the high erosion and high sediment delivery potential.     

Estimates of sediment and nutrient loads in 10 major catchments draining to the Great Barrier Reef during 2006-2009

The Great Barrier Reef (GBR) catchment area has been monitored simultaneously for sediment and nutrient exports from 10 priority catchments discharging into the GBR lagoon between 2006 and 2009. This allows GBR catchment-wide exports to be estimated and spatially compared within a discrete time-frame. Elevated levels of sediment and nutrient exports were recorded in all monitored catchments as compared to pre-European estimates, but vary around previous estimates of mean annual loads. During the period of monitoring, the Burdekin and Fitzroy catchments contributed the highest sediment and nutrient exports, however when loads were normalised for area, these catchments produced the lowest unit yields. In contrast, the highest yields were produced in the wetter and proportionately more intensively cultivated Johnstone, O'Connell, and Pioneer catchments particularly for dissolved nitrogens. This assessment offers the necessary scientific foundation for future monitoring, assessment, and management of sediment and nutrient loads entering the GBR.     

Towards ecologically relevant targets for river pollutant loads to the Great Barrier Reef

Degradation of coastal ecosystems in the Great Barrier Reef (GBR), Australia, has been linked with a decline in water quality from land-based runoff. This paper examines the reduction in current end-of-catchment loads required for total suspended solids (TSS) and dissolved inorganic nitrogen (DIN) to achieve GBR water quality guidelines. Based on first-order estimates of sustainable pollutant loads, current TSS and DIN loads would need to be reduced by approximately 7000ktons/y (41%) and 6000tons/y (38%), respectively. Next, these estimated reductions for TSS and DIN are compared with Reef Plan targets for anthropogenic sediment (-20% by 2020) and nitrogen (-50% by 2013) loads. If successful, these targets will accomplish approximately 40% of TSS and 92% of DIN load reductions required to achieve sustainable loads to the GBR lagoon. These first-order estimates elucidate the need to establish ecologically relevant targets for river pollutant loads to the GBR for management and policy.     

Monitoring pesticides in the Great Barrier Reef

Pesticide runoff from agriculture poses a threat to water quality in the world heritage listed Great Barrier Reef (GBR) and sensitive monitoring tools are needed to detect these pollutants. This study investigated the utility of passive samplers in this role through deployment during a wet and dry season at river mouths, two near-shore regions and an offshore region. The nearshore marine environment was shown to be contaminated with pesticides in both the dry and wet seasons (average water concentrations of 1.3-3.8 ng L⁻¹ and 2.2-6.4 ng L⁻¹, respectively), while no pesticides were detected further offshore. Continuous monitoring of two rivers over 13 months showed waters flowing to the GBR were contaminated with herbicides (diuron, atrazine, hexazinone) year round, with highest average concentrations present during summer (350 ng L⁻¹). The use of passive samplers has enabled identification of insecticides in GBR waters which have not been reported in the literature previously.     

Tidal currents in the central Great Barrier Reef

Observations at 8 sites in the outer central Great Barrier Reef show M₂, S₂, K₁, and O₁ tidal currents flow directly off-shelf (northeast), when the corresponding tide at Townsville is at zero height and falling, with typical amplitudes of 12, 6, 3, and 2 cm s^?1. On the slope (at 300 m depth), the vertically averaged long-shelf component was small. On the shelf, the eccentricity of the tidal ellipses decreases shoreward and the tidal ellipses rotate anticlockwise. The major axes of the tidal ellipses tilt left of cross-shelf, especially for the diurnal constituents. There is satisfactory agreement between the observed and modelled cross-shelf currents. The long-shelf velocity is sensitive to the long-shelf changes in amplitude and phase of the tide heights and high quality tidal data for open boundary conditions will be required if numerical models are to model these currents satisfactorily.     

Long-term sea-level variations in the central Great Barrier Reef

Low frequency sea-level variations and associated geostrophic currents in the central Great Barrier Reef (GBR) region near Townsville are studied using optimally-lagged multivariate regression. The analyses show that pressure-adjusted coastal sea levels and mid-shelf geostrophic currents are influenced predominantly by local along-shelf wind stress at the weather time-scale, and by climatic variables, such as atmospheric pressure and temperature, at seasonal and inter-annual time-scales. These forcing variables can specify sea levels over annual and inter-annual time-scales with a forecasting skill of 0.53 and 0.22, respectively (where 1.0 is perfect skill). Associated along-shelf geostrophic currents can be forecast with a skill of 0.57 over an annual time scale. If, instead, absolute coastal sea levels or offshore sea-level differences are used to specify the along-shelf geostrophic current, the forecasting skill is 0.75. A characteristic El Niño/Southern Oscillation (ENSO) response is detected for time periods up to 25 years in monthly sea-level both at Townsville and at western Pacific island sea-level stations. This spatially coherent response varies in intensity and phase within the Coral Sea. Sea-level differences show a pattern which characterizes known features of the large-scale circulation of the Coral Sea. These very low frequency sea-level variations in the Coral Sea must be taken into account to obtain accurate predictions of along-shelf geostrophic current variations on seasonal and inter-annual time scales. Regression analysis and a diagnostic river plume model show that the influence of the major rivers can produce sea-level changes due to buoyancy of order 5 cm. The corresponding errors in geostrophic velocities estimated using pressure-adjusted Townsville sea-level data alone are of order 5 cm s⁻¹ rms.     

Trace metals in algae from the Great Barrier Reef

Zinc, copper, cadmium, nickel, lead and mercury concentrations were examined in 48 species of algae from the Great Barrier Reef. In general the data showed considerable inter- and intra-specific variation with mean levels for each metal ranging from 0.27 to 38.6; 0.74 to 11.2; 0.08 to 2.2; 0.41 to 46.1; <0.45 to 6.7, and 0.005 to 0.320 μg g⁻¹ dry weight, respectively. Not-withstanding this, levels of all metals were substantially lower than reported values for algae from metal contaminated environments. The green alga, Chlorodesmis fastigiata, was the only species examined which was abundant at all study sites and, as a consequence, was considered to be the most suitable candidate for continued surveillance studies in the area.     

Trace metals in corals from the Great Barrier Reef

Various octocorallian and scleractinian corals from within the Great Barrier Reef Province were analysed for zinc, copper, cadmium, nickel and lead by atomic absorption spectroscopy. Of the two coral groups, the octocorals accumulated significantly greater amounts of all detectable metals. The soft coral, Sarcophyton sp., revealed distinct inter-locational differences for zinc, copper and cadmium. The potential of this genus for monitoring trace metal pollution in tropical reef waters is briefly discussed.     

Analyses of suspended sediment loads in Slovenian rivers

ABSTRACT

Suspended solids are present in every river, but high quantities can worsen the ecological conditions of streams; therefore, effective monitoring and analysis of this hydrological variable are necessary. Frequency, seasonality, inter-correlation, extreme events, trends and lag analyses were carried out for peaks of suspended sediment concentration (SSC) and discharge (Q) data from Slovenian streams using officially monitored data from 1955 to 2006 that were made available by the Slovenian Environment Agency. In total more than 500 station-years of daily Q and SSC data were used. No uniform (positive or negative) trend was found in the SSC series; however, all the statistically significant trends were decreasing. No generalization is possible for the best fit distribution function. A seasonality analysis showed that most of the SSC peaks occurred in the summer (short-term intense convective precipitation produced by thunderstorms) and in the autumn (prolonged frontal precipitation). Correlations between Q and SSC values were generally relatively small (Pearson correlation coefficient values from 0.05 to 0.59), which means that the often applied Q–SSC curves should be used with caution when estimating annual suspended sediment loads. On average, flood peak Q occurred after the corresponding SSC peak (clockwise-positive hysteresis loops), but the average lag time was rather small (less than 1 day).

Editor M.C. Acreman; Associate editor Y. Gyasi-Agyei     

Trace metals in surface water from the Great Barrier Reef

Filtered (0.45 μm), unacidified, surface seawater samples, collected at 3-monthly intervals for 9 months from three locations within the Great Barrier Reef Province, were analysed for zinc, copper, nickel, cadmium and lead by atomic absorption spectroscopy (air/acetylene flame) following Chelex-100 (ammonium form) extraction. Mean levels of each metal ranged from 0.03–0.35; 0.11–0.24; 0.06–0.16; <0.01–0.06; all less than 0.06 μg l⁻¹ respectively. Significant interlocational differences were observed for copper and nickel and clear temporal trends were identified for copper (location-dependent) and cadmium.     

Shelf sediment dispersal during the dry season,Princess Charlotte Bay,Great Barrier Reef,Australia

Princess Charlotte Bay, located on the northern Great Barrier Reef, is an environment of terrigenous and carbonate deposition. The dynamics on this shelf are controlled by the Great Barrier Reef at the edge of the shelf, and the mid-shelf, shore-normal reefs. This study examines the dynamics during the dry season, with six time-series records from instrumented tripod deployments and numerous hydrographic stations.The shallow nearshore waters and the estuaries prove to be the sites where most active sediment resuspension and transport takes place. Sediment resuspension is effected primarily by waves in the nearshore, and channeling of tidal currents in the estuaries. Bedload transport did not occur during this study, mainly because current velocities were too low. Suspended particulate matter (SPM) transport in the bay is governed by tides and winds. Strong tidal flow imparts a strong offshore component to the transport, and strong southeast winds impart an alongshore component that transports SPM out of the bay to the northwest. Rattlesnake Channel, east of Princess Charlotte Bay, is another route by which SPM leaves the bay. Flow through this channel is predominantly tidal, with ebb waters (leaving Princess Charlotte Bay) carrying higher SPM concentrations than flood waters.SPM flux in the nearshore was an order of magnitude higher than at offshore stations, with highest fluxes generally occurring at times of sustained southeast winds. Transect data show that SPM drops to average bay values in water 11 m deep, indicating most SPM is transported in nearshore waters.     

Assessing the additive risks of PSII herbicide exposure to the Great Barrier Reef

Herbicide residues have been measured in the Great Barrier Reef lagoon at concentrations which have the potential to harm marine plant communities. Monitoring on the Great Barrier Reef lagoon following wet season discharge show that 80% of the time when herbicides are detected, more than one are present. These herbicides have been shown to act in an additive manner with regards to photosystem-II inhibition. In this study, the area of the Great Barrier Reef considered to be at risk from herbicides is compared when exposures are considered for each herbicide individually and also for herbicide mixtures. Two normalisation indices for herbicide mixtures were calculated based on current guidelines and PSII inhibition thresholds. The results show that the area of risk for most regions is greatly increased under the proposed additive PSII inhibition threshold and that the resilience of this important ecosystem could be reduced by exposure to these herbicides.     

Estuarine modification of nutrient and sediment exports to the Great Barrier Reef Marine Park from the Daintree and Annan River catchments

Nutrient and suspended sediment concentrations were measured in the dry season and during the rising and falling stages of flood events in the Annan and Daintree rivers to estimate catchment exports. These flood events were also sampled along the salinity gradient in the estuary and nearshore shelf to quantify the modification of terrestrial sediment and nutrient loads as they pass through estuaries into the Great Barrier Reef lagoon. In the Daintree River TSS concentrations were found to increase between the catchment and the estuary plume. The source of TSS may have been scour of the estuarine channel or from land use in the catchment of the lower estuary. In the dry season nitrogen enters the Annan and Daintree estuaries predominantly in the form of PON and DON in roughly equal proportions. Nitrogen exports to the GBR are mostly in the form of DON. In the wet season the majority of nitrogen enters the estuaries as DON and leaves as PON. Nitrogen removal in the estuaries and plumes appears to be biologically mediated once suspended sediment concentrations decrease to a point where phytoplankton growth is not light limited. In the dry season phosphorus enters and leaves the estuaries primarily in organic form. PIP is the dominant form of phosphorus in river water, but leaves the estuary more evenly distributed between all forms. These estuarine processes result in less nitrogen and phosphorus being delivered to the GBR lagoon than is exported from the catchment. The differences between these estuaries highlights the need for further work to explore modifications in estuaries that drain into the Great Barrier Reef lagoon.     

Large-scale pesticide monitoring across Great Barrier Reef catchments--Paddock to Reef Integrated Monitoring, Modelling and Reporting Program

The transport and potential toxicity of pesticides in Queensland (QLD) catchments from agricultural areas is a key concern for the Great Barrier Reef (GBR). In 2009, a pesticide monitoring program was established as part of the Australian and QLD Governments' Reef Plan (2009). Samples were collected at eight End of System sites (above the tidal zone) and three sub-catchment sites. At least two pesticides were detected at every site including insecticides, fungicides, herbicides, and the Reef Plan's (2009) five priority photosystem II (PSII) herbicides (diuron, atrazine, hexazinone, tebuthiuron and ametryn). Diuron, atrazine and metolachlor exceeded Australian and New Zealand water quality guideline trigger values (TVs) at eight sites. Accounting for PSII herbicide mixtures increased the estimated toxicity and led to larger exceedances of the TVs at more sites. This study demonstrates the widespread contamination of pesticides, particularly PSII herbicides, across the GBR catchment area which discharges to the GBR.     

Regional scale nutrient modelling: exports to the Great Barrier Reef World Heritage Area

Clearing of native vegetation and replacement with cropping and grazing systems has increased nutrient exports to the Great Barrier Reef (GBR) to a level many times the natural rate. We present a technique for modelling nutrient transport, based on material budgets of river systems, and use it to identify the patterns and sources of nutrients exported. The outputs of the model can then be used to help prioritise catchment areas and land uses for management and assess various management options. Hillslope erosion is the largest source of particulate nutrients because of its dominance as a sediment source and the higher nutrient concentrations on surface soils. Dissolved nutrient fractions contribute 30% of total nitrogen and 15% of total phosphorus inputs. Spatial patterns show the elevated dissolved inorganic nitrogen export in the wetter catchments, and the dominance of particulate N and P from soil erosion in coastal areas. This study has identified catchments with high levels of contribution to exports and targeting these should be a priority.