The cycling and fate of terrestrially-derived sediments and nutrients in the coastal zone of the Great Barrier Reef shelf

The coastal zone of the Great Barrier Reef shelf, with an area of 30,000 km(2) and a water volume of 300 km(3), receives an average annual input of sediment on the order of 14-28 Mty(-1)--an estimated two- to fourfold increase since European settlement. There is considerable concern about the impact and ultimate fate of terrestrially-derived nutrients entering the Great Barrier Reef World Heritage Area (GBRWHA). Analysis of current data suggests that microbial communities in coastal waters and in unconsolidated sediments metabolise nutrients equivalent to the entire dissolved and particulate nutrient load debouched from land. River-derived nutrients account for 40-80% of the carbon, 13-30% of the nitrogen, and 2-5% of the phosphorus necessary to support the observed rates of benthic and pelagic mineralisation in Princess Charlotte Bay in the far north, and in Rockingham Bay and Missionary Bay in the central section, of the GBRWHA. Nearly all nitrogen is ultimately returned to the atmosphere via denitrification. There is little net burial of nutrients in subtidal sediments. These budget estimates are based on a sparse data set, but it is clear that marine sources of nutrients (N-fixation by pelagic and benthic cyanobacteria) must be important, but the magnitude of these sources is poorly known and likely to be highly variable in space and time. Data from sediment trap deployments suggest that, despite significant re-suspension, sedimentation fluxes are sufficient to balance benthic mineralisation rates. Most organic material deposited to the benthos appears to be flocculent or colloidal aggregates, perhaps formed via microbial mediation and exudation of extra-cellular material. The geophysical dynamics of the coastal boundary layer plays an important role in concentrating biological and biogeochemical activity within a shallow, narrow coastal zone. Mangroves and tidal flats are small in area, but trap, transform, and store a disproportionate amount of sediment and organic matter within the GBRWHA. The highly efficient use of terrestrially-derived nutrients by benthic and pelagic microbes in the coastal zone helps to explain why coral reefs on the middle and outer shelf have remained relatively unscathed despite a significant increase in sediment delivery.     

Fine sediment and nutrient dynamics related to particle size and floc formation in a Burdekin River flood plume, Australia

The extreme 2010-2011 wet season resulted in highly elevated Burdekin River discharge into the Great Barrier Reef lagoon for a period of 200 days, resulting in a large flood plume extending >50km offshore and >100km north during peak conditions. Export of suspended sediment was dominated by clay and fine silt fractions and most sediment initially settled within ～10km of the river mouth. Biologically-mediated flocculation of these particles enhanced deposition in the initial low salinity zone. Fine silt and clay particles and nutrients remaining in suspension, were carried as far as 100km northward from the mouth, binding with planktonic and transparent exopolymer particulate matter to form large floc aggregates (muddy marine snow). These aggregates, due to their sticky nature, likely pose a risk to benthic organisms e.g. coral and seagrass through smothering, and also by contributing to increased turbidity during wind-induced resuspension events.     

Water Quality in the Great Barrier Reef World Heritage Area: Past Perspectives, Current Issues and New Research Directions

Elevated sediment and nutrient concentrations have long been regarded as the pre-eminent water quality threats to the Great Barrier Reef, with the potential risk posed by other pollutants such as heavy metals, persistent chlorohydrocarbons, PCBs and petroleum related compounds considered to be of lesser consequence. However, the management focus on these latter types of pollutants has recently shifted to acknowledge the potential impact posed by diuron, dioxins, dieldrin, and mercury and cadmium concentrations detected in sediments and biota along the Great Barrier Reef and southern Queensland coastline. In general, these threats originate from areas dominated by intensive cropping agriculture and are exacerbated by high rainfall and erosion rates in the wet tropics region of the Queensland coast. Maintenance of long-term monitoring programmes, which utilize innovative data acquisition techniques will enable assessment of change in environmentally relevant pollutant concentrations over time. However, improved land management practices, which include an immediate minimization of vegetation clearance and responsible use of pesticides and fertilizers in Queensland are essential if water quality in the Great Barrier Reef World Heritage Area is to be maintained and protected.     

Assessing the additive risks of PSII herbicide exposure to the Great Barrier Reef

Herbicide residues have been measured in the Great Barrier Reef lagoon at concentrations which have the potential to harm marine plant communities. Monitoring on the Great Barrier Reef lagoon following wet season discharge show that 80% of the time when herbicides are detected, more than one are present. These herbicides have been shown to act in an additive manner with regards to photosystem-II inhibition. In this study, the area of the Great Barrier Reef considered to be at risk from herbicides is compared when exposures are considered for each herbicide individually and also for herbicide mixtures. Two normalisation indices for herbicide mixtures were calculated based on current guidelines and PSII inhibition thresholds. The results show that the area of risk for most regions is greatly increased under the proposed additive PSII inhibition threshold and that the resilience of this important ecosystem could be reduced by exposure to these herbicides.     

A multi-criteria approach to Great Barrier Reef catchment (Queensland, Australia) diffuse-source pollution problem

This paper presents a multi-criteria based tool for assessing the relative impact of diffuse-source pollution to the Great Barrier Reef (GBR) from the river basins draining into the GBR lagoon. The assessment integrates biophysical and ecological data of water quality and pollutant concentrations with socio-economic information pertaining to non-point source pollution and (potential) pollutant impact. The tool generates scores for each river basin against four criteria, thus profiling the basins and enabling prioritization of management alternatives between and within basins. The results support policy development for pollution control through community participation, scientific data integration and expert knowledge contributed by people from across the catchment. The results specifically provided support for the Reef Water Quality Protection Plan, released in October 2003. The aim of the plan is to provide a framework for reducing discharge of sediment, nutrient and other diffuse-source loads and (potential) impact of that discharge and for prioritising management actions both between and within river basins.     

Organochlorine, Heavy Metal and Polyaromatic Hydrocarbon Pollutant Concentrations in the Great Barrier Reef (Australia) Environment: a Review

Past monitoring of heavy metals, organochlorine compounds and polyaromatic hydrocarbons (PAHs) has found that pollutant concentrations are generally low within the Great Barrier Reef Marine Park and World Heritage Area and are indicative of a relatively unpolluted environment. The exceptions are sites that are adjacent to human activity such as ports and harbours, urban centres and areas adjacent to intensive agricultural activity. These sites have elevated concentrations of a range of pollutants. Concentrations of dioxins have also been found to be elevated in marine park sediments. Elevated pollutant concentrations are generally the consequence of effluent discharge, urban stormwater, and agricultural and industrial runoff. However, a majority of Great Barrier Reef pollutant data are now dated, and contemporary information is required concerning the distribution and impact of pollutants in the Queensland marine environment. The utility of specialized monitoring tools such as biomarkers for tropical marine environments urgently needs to be examined. With this information, appropriate risk assessment and monitoring can be implemented and effective management strategies developed to protect tropical marine ecosystems including the Great Barrier Reef.     

Alkalinity and dissolved inorganic carbon exports from tropical and subtropical river catchments discharging to the Great Barrier Reef,Australia

Dissolved inorganic carbon (DIC) transport by rivers is an important control on the pH and carbonate chemistry of the coastal ocean. Here, we combine DIC and total alkalinity (TAlk) concentrations from four tropical rivers of the Great Barrier Reef region in Australia with daily river discharge to quantify annual river loads and export rates. DIC in the four rivers ranged from 284 to 2,639 μmol kg⁻¹ and TAlk ranged from 220 to 2,612 μmol kg⁻¹. DIC:TAlk ratios were mostly greater than one suggesting elevated exports of free [CO₂*]. This was pronounced in the Johnstone and Herbert rivers of the tropical wet north. The largest annual loads were transported in the two large river catchments of the southern Great Barrier Reef region, the Fitzroy and Burdekin rivers. The carbon stable isotopic composition of DIC suggests that carbonate weathering was the dominant source of DIC in the southern rivers, and silicate weathering was likely a source of DIC in the northern Wet Tropics rivers. Annual loads and export rates were strongly driven by precipitation and discharge patterns, the occurrence of tropical cyclones, and associated flooding events, as well as distinct seasonal dry and wet periods. As such, short-lived hydrological events and long-term (seasonal and inter-annual) variation of DIC and TAlk that are pronounced in rivers of the tropical and subtropical wet and dry climate zone should be accounted for when assessing inorganic carbon loads to the coastal ocean and the potential to buffer against or accelerate ocean acidification.     

Exposure of inner-shelf reefs to nutrient enriched runoff entering the Great Barrier Reef Lagoon: post-European changes and the design of water quality targets

We used historical flood plume extent data (modelled) to quantify the typical spatial extent of the summer runoff-seawater mixing zone of the Great Barrier Reef (GBR) lagoon. Spatially explicit analysis of the variability of in situ chlorophyll a concentrations (observed) across the runoff-seawater mixing zone, then allowed us to explore regional differences in the nutrient enrichment impact of runoff events from the various river systems that drain the GBR catchment. We demonstrate the existence of a discernable north-south gradient along the length of the GBR, such that for equivalent runoff:seawater dilutions ratios, lower levels of nutrient enrichment (as indicated by chlorophyll alpha observations) result from the river systems that drain the relatively undisturbed northern areas of the GBR catchment, compared to more human-impacted central and south areas. We identify a strong correlation between this north-south enrichment gradient and the flood concentration of dissolved inorganic nitrogen (DIN) entrained by the various river systems. By substituting the nutrient enrichment characteristics of the human-impacted river discharges with those of the undisturbed northern rivers, we provide a means to compare the short-term enriching 'footprint' for existing runoff intrusions with those that are likely to have occurred under pre-European catchment conditions. We demonstrate that under pre-European conditions, the nutrient enriching impact from river runoff was likely to have been largely constrained within 1-2 km of the coast, whereas existing conditions support the impact of reefs some 20-30 km off the coast. By using the developed spatial relations, we show that for the heavily human-impacted river systems, reductions in the end-of-river concentrations of DIN in the order 50-80% are needed in order to restore parity with pre-European conditions. We discuss these results in regard to developing end-of-catchment water quality targets for the region.     

Use of a telemetered dispensing system for controlling nutrient additions to experimental patch reefs in the ENCORE study at One Tree Island, Great Barrier Reef, Australia

A telemetrically controlled system was developed to add nutrients automatically to experimental patch reefs in a remote marine environment. The experiment, called ENCORE, was done in the lagoon of One Tree Island, a remote research station at the southern end of the Great Barrier Reef. Nutrient dispensing units (NDUs), moored adjacent to patch reefs in the lagoon, were telemetrically linked to a base station on the island. The base station, about 3 km away from the furthest NDU, consisted of a dedicated computer, controller and radio transmitter, which relayed coded signals to a radio receiver mounted on each NDU. This activated a solenoid valve to discharge a measured quantity of concentrated nutrient solution from a measuring chamber using compressed air from a SCUBA tank. The solution was discharged through 4-8 PVC outlets into the basins of the patch reefs to allow thorough mixing. The base station interrogated each NDU to find out if the operation had been successful and stored the information on disk to provide a daily log of operations. Nutrient samples taken within the patch reefs demonstrated that calculated initial mean concentrations of 2 micrograms-at PO4-P l-1 and 10 micrograms-at NH4-N l-1 were achieved. The system we have developed can be used in many situations where regular perturbations need to be introduced to aquatic ecosystems. It uses state-of-the-art technology, yet all components are commercially readily available and relatively inexpensive. Detailed specifications and drawings are available from the Great Barrier Reef Marine Park Authority.     

Water quality guidelines for the Great Barrier Reef World Heritage Area: a basis for development and preliminary values

The Australian and New Zealand Guidelines for Fresh and Marine Water Quality (ANZECC Guidelines) provide default national guideline values for a wide range of indicators of relevance to the protection of the ecological condition of natural waters. However, the ANZECC Guidelines also place a strong emphasis on the need to develop more locally relevant guidelines. Using a structured framework, this paper explores indicators and regional data sets that can be used to develop more locally relevant guidelines for the Great Barrier Reef World Heritage Area (GBRWHA). The paper focuses on the water quality impacts of adjacent catchments on the GBRWHA with the key stressors addressed being nutrients, sediments and agricultural chemicals. Indicators relevant to these stressors are discussed including both physico-chemical pressure indicators and biological condition indicators. Where adequate data sets are available, guideline values are proposed. Generally, data were much more readily available for physico-chemical pressure indicators than for biological condition indicators. Specifically, guideline values are proposed for the major nutrients nitrogen (N) and phosphorus (P) and for chlorophyll-a. More limited guidelines are proposed for sediment related indicators. For most agricultural chemicals, the ANZECC Guidelines are likely to remain the default of choice for some time but it is noted that there is data in the literature that could be used to develop more locally relevant guidelines.     

Estuarine modification of nutrient and sediment exports to the Great Barrier Reef Marine Park from the Daintree and Annan River catchments

Nutrient and suspended sediment concentrations were measured in the dry season and during the rising and falling stages of flood events in the Annan and Daintree rivers to estimate catchment exports. These flood events were also sampled along the salinity gradient in the estuary and nearshore shelf to quantify the modification of terrestrial sediment and nutrient loads as they pass through estuaries into the Great Barrier Reef lagoon. In the Daintree River TSS concentrations were found to increase between the catchment and the estuary plume. The source of TSS may have been scour of the estuarine channel or from land use in the catchment of the lower estuary. In the dry season nitrogen enters the Annan and Daintree estuaries predominantly in the form of PON and DON in roughly equal proportions. Nitrogen exports to the GBR are mostly in the form of DON. In the wet season the majority of nitrogen enters the estuaries as DON and leaves as PON. Nitrogen removal in the estuaries and plumes appears to be biologically mediated once suspended sediment concentrations decrease to a point where phytoplankton growth is not light limited. In the dry season phosphorus enters and leaves the estuaries primarily in organic form. PIP is the dominant form of phosphorus in river water, but leaves the estuary more evenly distributed between all forms. These estuarine processes result in less nitrogen and phosphorus being delivered to the GBR lagoon than is exported from the catchment. The differences between these estuaries highlights the need for further work to explore modifications in estuaries that drain into the Great Barrier Reef lagoon.     

Inter-annual variability of wet season freshwater plume extent into the Great Barrier Reef lagoon based on satellite coastal ocean colour observations

Riverine freshwater plumes are the major transport mechanism for nutrients, sediments and pollutants into the Great Barrier Reef (GBR) lagoon and connect the land with the receiving coastal and marine waters. Knowledge of the variability of the freshwater extent into the GBR lagoon is relevant for marine park management to develop strategies for improving ecosystem health and risk assessments. In this study, freshwater extent has been estimated for the entire GBR lagoon area from daily satellite observations of the Moderate Resolution Imaging Spectroradiometer (MODIS) between 2002 and 2010. To enable a reliable mapping of freshwater plumes we applied a physics-based coastal ocean colour algorithm, that simultaneously retrieves chlorophyll-a, non-algal particulate matter and coloured dissolved organic matter (CDOM), from which we used CDOM as a surrogate for salinity (S) for mapping the freshwater extent.     

Water quality monitoring: a combined approach to investigate gradients of change in the Great Barrier Reef, Australia

For the managers of a region as large as the Great Barrier Reef, it is a challenge to develop a cost effective monitoring program, with appropriate temporal and spatial resolution to detect changes in water quality. The current study compares water quality data (phytoplankton abundance and water clarity) from remote sensing with field sampling (continuous underway profiles of water quality and fixed site sampling) at different spatial scales in the Great Barrier Reef north of Mackay (20 degrees S). Five transects (20-30 km long) were conducted from clean oceanic water to the turbid waters adjacent to the mainland. The different data sources demonstrated high correlations when compared on a similar spatial scale (18 fixed sites). However, each data source also contributed unique information that could not be obtained by the other techniques. A combination of remote sensing, underway sampling and fixed stations will deliver the best spatial and temporal monitoring of water quality in the Great Barrier Reef.     

Assessing the potential underestimation of sediment and nutrient loads to the Great Barrier Reef lagoon during floods

Much of the sediment and nutrient load to the Great Barrier Reef (GBR) lagoon happens during over bank floods, when discharge can be significantly underestimated by standard river gauges. This paper assesses the potential need for a flood load correction for 28 coastal rivers that discharge into the GBR lagoon. For each river, daily discharge was divided into flows above and below a 'flood' threshold to calculate the mean annual percentage flow above this threshold. Most GBR rivers potentially need a flood load correction as over 15% of their mean annual flow occurs above the minor flood level; only seven rivers need little/no correction as their flood flows were less than 5% of the mean annual flow. Improved assessment of the true load of materials to the GBR lagoon would be an important contribution to the monitoring and reporting of progress towards Reef Plan and associated marine load targets.     

The Effect of the Great Barrier Reef on the Propagation of the 2007 Solomon Islands Tsunami Recorded in Northeastern Australia

The effect of offshore coral reefs on the impact from a tsunami remains controversial. For example, field surveys after the 2004 Indian Ocean tsunami indicate that the energy of the tsunami was reduced by natural coral reef barriers in Sri Lanka, but there was no indication that coral reefs off Banda Aceh, Indonesia had any effect on the tsunami. In this paper, we investigate whether the Great Barrier Reef (GBR) offshore Queensland, Australia, may have weakened the tsunami impact from the 2007 Solomon Islands earthquake. The fault slip distribution of the 2007 Solomon Islands earthquake was firstly obtained by teleseismic inversion. The tsunami was then propagated to shallow water just offshore the coast by solving the linear shallow water equations using a staggered grid finite-difference method. We used a relatively high resolution (approximately 250 m) bathymetric grid for the region just off the coast containing the reef. The tsunami waveforms recorded at tide gauge stations along the Australian coast were then compared to the results from the tsunami simulation when using both the realistic 250 m resolution bathymetry and with two grids having fictitious bathymetry: One in which the the GBR has been replaced by a smooth interpolation from depths outside the GBR to the coast (the “No GBR” grid), and one in which the GBR has been replaced by a flat plane at a depth equal to the mean water depth of the GBR (the “Average GBR” grid). From the comparison between the synthetic waveforms both with and without the Great Barrier Reef, we found that the Great Barrier Reef significantly weakened the tsunami impact. According to our model, the coral reefs delayed the tsunami arrival time by 5–10 minutes, decreased the amplitude of the first tsunami pulse to half or less, and lengthened the period of the tsunami.     

Regional scale nutrient modelling: exports to the Great Barrier Reef World Heritage Area

Clearing of native vegetation and replacement with cropping and grazing systems has increased nutrient exports to the Great Barrier Reef (GBR) to a level many times the natural rate. We present a technique for modelling nutrient transport, based on material budgets of river systems, and use it to identify the patterns and sources of nutrients exported. The outputs of the model can then be used to help prioritise catchment areas and land uses for management and assess various management options. Hillslope erosion is the largest source of particulate nutrients because of its dominance as a sediment source and the higher nutrient concentrations on surface soils. Dissolved nutrient fractions contribute 30% of total nitrogen and 15% of total phosphorus inputs. Spatial patterns show the elevated dissolved inorganic nitrogen export in the wetter catchments, and the dominance of particulate N and P from soil erosion in coastal areas. This study has identified catchments with high levels of contribution to exports and targeting these should be a priority.     

River plume patterns and dynamics within the Southern California Bight

Stormwater river plumes are important vectors of marine contaminants and pathogens in the Southern California Bight. Here we report the results of a multi-institution investigation of the river plumes across eight major river systems of southern California. We use in situ water samples from multi-day cruises in combination with MODIS satellite remote sensing, buoy meteorological observations, drifters, and HF radar current measurements to evaluate the dispersal patterns and dynamics of the freshwater plumes. River discharge was exceptionally episodic, and the majority of storm discharge occurred in a few hours. The combined plume observing techniques revealed that plumes commonly detach from the coast and turn to the left, which is the opposite direction of Coriolis influence. Although initial offshore velocity of the buoyant plumes was ∼50 cm/s and was influenced by river discharge inertia (i.e., the direct momentum of the river flux) and buoyancy, subsequent advection of the plumes was largely observed in an alongshore direction and dominated by local winds. Due to the multiple day upwelling wind conditions that commonly follow discharge events, plumes were observed to flow from their respective river mouths to down-coast waters at rates of 20–40 km/d. Lastly, we note that suspended-sediment concentration and beam-attenuation were poorly correlated with plume salinity across and within the sampled plumes (mean r²=0.12 and 0.25, respectively), while colored dissolved organic matter (CDOM) fluorescence was well correlated (mean r²=0.56), suggesting that CDOM may serve as a good tracer of the discharged freshwater in subsequent remote sensing and monitoring efforts of plumes.     

Identification of the natural product 2,3,4,5-tetrabromo-1-methylpyrrole in Pacific biota, passive samplers and seagrass from Queensland, Australia

Halogenated natural products (HNPs) are frequently detected in marine organisms. High HNP concentrations have previously been found in marine mammals from the Great Barrier Reef, Australia, including in the blubber of herbivorous dugongs (Dugong dugon). To identify the source of HNPs we initially focused on the analysis of Australian seagrass (Halophila ovalis) which serves as the principal food source for dugongs. GC/MS analysis of the seagrass indicated the presence of several organobromine compounds. One compound was identified as 2,3,4,5-tetrabromo-1-methylpyrrole (TBMP) by synthesis. Subsequent analysis of semipermeable membrane devices demonstrated that the photo-sensitive TBMP is widespread in the Great Barrier Reef (Queensland, Australia). The detection of larger TBMP concentrations in fish fillets from Chile and traces in mussels from New Zealand indicated that this potential HNP may be distributed throughout the Southern Pacific Ocean.     

River loads of suspended solids, nitrogen, phosphorus and herbicides delivered to the Great Barrier Reef lagoon

Degradation of coastal ecosystems in the Great Barrier Reef (GBR) lagoon, Australia, has been linked with increased land-based runoff of suspended solids, nutrients and pesticides since European settlement. This study estimated the increase in river loads for all 35 GBR basins, using the best available estimates of pre-European and current loads derived from catchment modelling and monitoring. The mean-annual load to the GBR lagoon for (i) total suspended solids has increased by 5.5 times to 17,000ktonnes/year, (ii) total nitrogen by 5.7 times to 80,000tonnes/year, (iii) total phosphorus by 8.9 times to 16,000tonnes/year, and (iv) PSII herbicides is 30,000kg/year. The increases in river loads differ across the 10 pollutants and 35 basins examined, reflecting differences in surface runoff, urbanisation, deforestation, agricultural practices, mining and retention by reservoirs. These estimates will facilitate target setting for water quality and desired ecosystem states, and enable prioritisation of critical sources for management.