Diatom taphonomy and silica cycling in two freshwater lakes and their implications for inferring past lake productivity

Diatom preservation can be a major taphonomic issue in many lakes but is often unrecognised and its impacts on qualitative and quantitative inferences (such as productivity and biodiversity estimates) from sedimentary archives are seldom explored. Here two palaeolimnological case studies of 20th-century anthropogenic eutrophication of freshwater lakes in Northern Ireland (Lough Neagh and Lough Augher) are re-visited and new data presented on diatom preservation. Assessing problems of taphonomy challenges previous interpretations of silica dynamics and diatom productivity at these sites. Diatom preservation was assessed in both sediment trap material and sediment cores from Lough Neagh, and in sediment cores from Lough Augher. Preservation data, combined with geochemical analysis (Si, Fe), provide an insight into silica cycling and diatom accumulation over a range of temporal scales from these lakes. Diatom preservation was generally good for the Lough Neagh material, although differential (better) preservation of the smaller Aulacoseira subarctica compared to the larger Stephanodiscus neoastraea sensu lato valves was clear, especially in sediments. Porewater silica showed a complex seasonal pattern in the upper sediment, against expectations of steady-state. The Lough Augher material was generally poorly preserved, although preservation (dissolution) was significantly (and positively) correlated to bulk sedimentation rate, and was found to be a major control on (net) diatom accumulation rate across the basin. Past seasonal and severe anoxia at Lough Augher did not improve diatom preservation, contrary to some previous studies, which may be due to extreme changes in sedimentary redox conditions. Finally, using published experimental relationships between dissolution and diatom valve loss, correction factors were applied to previously published profiles of diatom accumulation over the last ~150 years (biovolume from Lough Neagh and frustule accumulation rate from Lough Augher), which suggest that diatom productivity estimates from sedimentary records are underestimated by a factor of 2–4 due to dissolution effects alone. The results clearly have implications for the reliability and accuracy of diatom-based inferences made from sediment records, both qualitative and quantitative, especially for those that employ diatoms as direct measures of productivity or biodiversity.     

Factors affecting diatom distribution in floodplain lakes of the southeast Murray Basin,Australia and implications for palaeolimnological studies

Diatom assemblages of surface sediments in 46 billabongs from four river floodplains in the southeast Murray-Darling Basin, Australia were sampled to investigate drivers of species distribution. The principal purpose of the study was to derive information to aid interpretation of diatom-based palaeoecological studies of these systems and of floodplain lakes more generally. Patterns in billabong diatom assemblages in relation to river reach, hydrology and farming intensity on surrounding land were examined, as were correlations with water quality variables. Seasonal variation in billabong water quality was high relative to spatial variation, and spatial patterns in billabong water quality were weak. In contrast, strong patterns were evident in diatom assemblages. Three main patterns were observed: (1) a distinction between billabongs dominated by planktonic diatoms from those dominated by benthic and attached forms; (2) differences in diatom assemblages in billabongs on different river reaches; and (3) differences in assemblages in billabongs with different hydrology. Of all water quality variables tested, total phosphorus (TP), total nitrogen (TN) and pH exerted the strongest independent influence on diatom distribution; however, only TP remained an important variable when species variation due to river reach, hydrology, and aquatic plant cover was taken into account. The weak influence of water quality on diatom distribution is interpreted as reflecting the dichotomy between plankton and non-plankton-dominated billabongs, the influence of hydrology and biogeography, the lack of strong spatial water quality gradients and the high degree of temporal variability in water quality. The findings show that diatom records from billabong sediments can provide evidence of long-term changes in the abundance of aquatic macrophytes and hydrology. They also suggest that merging calibration data sets across regions for the purpose of improving diatom transfer functions for water quality reconstruction is of limited value for floodplain lakes, and that performance is more likely to be gained by boosting site numbers within regions.     

Late-glacial pollen and diatom changes in response to two different environmental perturbations: volcanic eruption and Younger Dryas cooling

A high-resolution pollen and diatom stratigraphy has been studied from late-glacial annually laminated sediments of Holzmaar (425 m a.s.l., Germany). The sediment sequence studied comprises 475 varves and includes two environmental perturbations of different type and duration: the short, abrupt deposition of the late Allerød tephra layer of the Laacher See volcano (LST, 11 000 yr B.P.), and the more gradual onset of the 'Younger Dryas climatic cooling.Numerical analyses involving (partial) redundancy analyses in connection with Monte Carlo permutation tests suggest that the deposition of 78 mm of Laacher See Tephra had a statistically significant effect on the pollen stratigraphy (percentage and accumulation rates), most probably because of the proximity of the site to the volcano. The diatom accumulation rates also show a statistically significant change, whereas the diatom percentage data do not change significantly. The between-sample rates-of-change in both biostratigraphies are higher at and just after the LST event than at the transition to the Younger Dryas biozone. Sequence splitting of pollen and diatom accumulation rate data also shows a clustering of significant splits at the LST event. A close correlation between changes in the pollen and diatom percentage data for the investigated time-interval suggests a common underlying climatic signal, whereas the accumulation rates of both biostratigraphies behave more individualistically and show more short-term variability due, in part, to the inherent noise in the two data sets. Variance partitioning shows that the local pollen and diatom assemblage zones explain much of the variance in the data-sets. Statistical modelling using redundancy analysis shows that the changes in the diatom assemblages are best predicted by the Younger Dryas biozone and the main changes in the pollen stratigraphy (as represented by the first PCA axis of the pollen data).The results suggest that the biostratigraphies studied at Holzmaar reflect generally stable systems which were disturbed by the deposition of the Laacher See Tephra. After a phase of recovery both systems again reached a new phase of stability prior to the long-term Younger Dryas climatic deterioration that perturbed the assemblages again. The very close and statistically significant parallelism between the major stratigraphical patterns in the pollen and diatom percentage data highlights the responses of the two biological systems to environmental perturbations at different temporal scales.     

Late Holocene diatom assemblages in a lake-sediment core from Central Kamchatka,Russia

Fossil diatom assemblages in a sediment core from a small lake in Central Kamchatka (Russia) were used to reconstruct palaeoenvironmental conditions of the late Holocene. The waterbody may be a kettle lake that formed on a moraine of the Two-Yurts Lake Valley, located on the eastern slope of the Central Kamchatka Mountain Chain. At present, it is a seepage lake with no surficial outflow. Fossil diatom assemblages show an almost constant ratio between planktonic and periphytic forms throughout the record. Downcore variations in the relative abundances of diatom species enabled division of the core into four diatom assemblage zones, mainly related to changes in abundances of Aulacoseira subarctica, Stephanodiscus minutulus, and Discostella pseudostelligera and several benthic species. Associated variations in the composition and content of organic matter are consistent with the diatom stratigraphy. The oldest recovered sediments date to about 3220 BC. They lie below a sedimentation hiatus and likely include reworked deposits from nearby Two-Yurts Lake. The initial lake stage between 870 and 400 BC was characterized by acidic shallow-water conditions. Between 400 BC and AD 1400, lacustrine conditions were established, with highest contributions from planktonic diatoms. The interval between AD 1400 and 1900 might reflect summer cooling during the Little Ice Age, indicated by diatoms that prefer strong turbulence, nutrient recycling and cooler summer conditions. The timing of palaeolimnological changes generally fits the pattern of neoglacial cooling during the late Holocene on Kamchatka and in the neighbouring Sea of Okhotsk, mainly driven by the prevailing modes of regional atmospheric circulation.     

Holocene diatom flora and stratigraphy from sediment cores of two Antarctic lakes (King George Island)

The diatom stratigraphy of Holocene sediment cores from two Antarctic lakes (Mondsee, Tiefersee; 62° 10 S/58° 50 W) of King George Island was investigated. The diatom assemblages were dominated by cosmopolitan species. The flora was composed of three main components: 1) taxa of submersed bryophytic habitats, which also occur in the bryophilic diatom flora of southern South America; 2) species of various terrestrial habitats, including some specific subantarctic taxa; 3) species distributed in coastal inland waters influenced by sea-spray.Changes in sediment pattern and diatom species composition seemed to reflect climatic changes. At least three different core sections were distinguished in both lakes: Two sections rich in mosses occur between approx. 7000–4700 B.P. and from 3200 B.P. to present, in general resembling present day conditions. In between is a section of high allochthonous content with generally low diatom concentrations and rising percentages of aerophilic, halophilic and alkaliphilic diatoms. An increase of melt water discharge, possible sea-spray influence, and lake- level fluctuations are discussed.Three new taxa are described: Achnanthes metakryophila nov. spec., Achnanthes renei nov. spec., Navicula australomediocris nov. spec. The taxonomy of selected taxa is discussed.     

Recent anthropogenic impact in ancient Lake Ohrid (Macedonia/Albania): a palaeolimnological approach

Ancient lakes, which are important centres of biodiversity and endemism, are threatened by a wide variety of human impacts. To assess environmental impact on ancient Lake Ohrid we have taken short sediment cores from two contrasting site locations, comprising a site of urban pollution and an apparently pristine area. Recent impacts on water quality and ecology were assessed using sediment, geochemical, ostracode, and diatom data derived from analysis of two ²¹⁰Pb-dated sediment cores spanning the period from 1918 to 2009. According to the index of geoaccumulation, sediments were often moderately contaminated with As. Fe and Ni concentrations often exceeded reported maximum limits above which harmful effects on sediment-dwelling organisms are expected. Productivity in the (pristine) south-eastern part of Lake Ohrid (Sveti Naum) is generally lower than in the north, probably due to the strong influence of spring discharge. Low ostracode and diatom concentrations, low abundance of the epilimnetic diatom Cyclotella ocellata, and low values of TOC and TIC indicate a lower productivity from the early 1920s to the late 1980s. Since the mid 1970s, increased relative abundance of C. ocellata and increasing diatom concentration indicate increasing productivity in the south-eastern part. Rising numbers of ostracode valves and higher TIC and TOC contents in both sediment cores indicate an increase in productivity during the late 1980s. A slight increase in productivity near Sveti Naum continued from the early 1990s until 2009, witnessed by rising TC, TIC, and TOC content and a generally high number of ostracode valves and ostracode diversity. The area near the City of Struga (site of urban pollution) is also characterized by rising TOC and TIC contents and, furthermore, by increasing Cu, Fe, Pb, and Zn concentrations since the early 1990s. The recent reduction in the number of ostracode valves and ostracode diversity is probably caused by a higher heavy metal load into the lake. This suggests that living conditions for the endemic species in Lake Ohrid have become less favourable in the northern part of the lake, which might threaten the unique flora and fauna of Lake Ohrid.     

Mission possible: diatoms can be used to infer past duckweed (lemnoid Araceae) dominance in ponds

Compared to larger lakes, ponds have rarely been the focus of palaeoecological studies. A common feature of ponds, especially those subject to eutrophication, is mass surface coverings of lemnoid Araceae (duckweed) which have severe implications for ecological processes in small waterbodies, in particular lowered oxygen content. To help understand the implications of duckweed dominance for the long-term ecology of ponds, and to determine the potential for palaeoecological studies in ponds more generally, we develop a new diatom-based Lemna-indicator metric. Recent studies of diatom host-plant relationships have shown significant associations between duckweed and the epiphytes Lemnicola hungarica and Sellaphora saugerresii (formally known as Sellaphora seminulum). To determine the potential of these species as palaeo-indicators of long-term duckweed dynamics in ponds, we investigated the diatom composition of surface sediment assemblages in sets of duckweed and non-duckweed-dominated ponds in Norfolk, eastern England. In addition, we undertook diatom analysis of two cores from a small farmland pond (Bodham Rail Pit) subject to a known duckweed dominance event (1999–2005). Both L. hungarica and S. saugerresii were significant predictors of past Lemna dominance in the surface sediments. Further, in the core study, both diatom species accurately and closely tracked the documented “on–off” duckweed cycle. Our study suggests huge potential for using ponds in palaeoecological studies and for diatom-based investigations of floating plant histories.     

Diatom and foraminifera relationships to water quality in The Coorong,South Australia,and the development of a diatom-based salinity transfer function

The Ramsar-listed Coorong lagoon lies at the terminus of the Murray-Darling River system in South Australia. Diatom and foraminifera relationships with water quality were characterised in order to develop diatom- and foraminifera-based models with the potential to infer water column salinity. Seventy-four samples were collected during 2007, a year of continuing drought in the catchment, and of no discharges at the Murray Mouth. The sample sites had a salinity gradient of 1.8–190 g l⁻¹ total dissolved solids. The diatom data set comprised 215 taxa, while there were only eight taxa in the foraminiferal data set. Canonical correspondence analysis of diatom species-environment relationships showed that salinity explained the largest proportion of diatom variance. Hence, a diatom-based salinity transfer function with reasonable predictive power (measured vs. diatom-inferred salinity r _jack² = 0.82; Root Mean Squared Error of Prediction = 16 g l⁻¹) was developed. Application of the transfer function to fossil diatom assemblages from The Coorong suggested that pre-European salinity values were generally >50 g l⁻¹ and that salinity declined following settlement. These results, however, contradict the recent history of The Coorong where there have been substantial lagoon-wide salinity increases. The pre-impact diatom flora has no analogue in the modern data set, highlighting the degree of departure from past conditions. CCA of the foraminiferal data set identified salinity and total nitrogen as the variables with the greatest explanatory power. However, accurate predictive models could not be developed using either variable due to low foraminiferal abundance and species richness. These factors may have been a consequence of diminished foraminiferal recruitment rates over successive years, an artefact of reduced marine water input to The Coorong. Future attempts to generate predictive models from this region would benefit from the inclusion of data from distant locations, since suitable analogue sites do not exist in close proximity. The study has generated useful insights to the apparently broad salinity tolerances for several cosmopolitan diatom and foraminifera species, and has identified a number of diatom and foraminifera taxa that may prove useful in the qualitative interpretation of down-core trends in The Coorong and the lower Murray River region.     

Paleolimnological significance of observed distribution patterns of chrysophyte cysts in arctic pond environments

In a survey of 35 high arctic ponds, chrysophycean cysts were relatively more common in moss periphyton and epilithon habitats, than in surface sediment samples. The highest percentages of cysts relative to diatoms were found in the semi-aquatic mosses. Although chrysophytes are generally considered to be planktonic, periphytic taxa may be common in high latitudes. The ratio of diatom frustules to chrysophyte cysts in arctic sediment cores may be tracking different environmental variables than paleolimnologists may intuitively expect based on observations from more temperate regions.     

A climatic-limnologic model of diatom succession for paleolimnological interpretation of varved sediments at Elk Lake,Minnesota

Sediment traps placed in the profundal region of Elk Lake, north central Minnesota during the 1979 spring and 1983–84 fall and spring seasons monitored seasonal diatom production for two climatically distinctive periods. The spring of 1979 was one of the coldest and wettest on record. Ice out at Elk Lake was 10 days later than average, and spring circulation was short. Fragilaria crotonensis dominated the late spring and early summer diatom production in association with Synedra and Cyclotella species, perhaps because rates of phosphorus supply were low compared to silica. The winter of 1983–84 was drier than usual, and the early but cold spring of 1984 caused ice out at Elk Lake to be about 1 week earlier than normal. Spring storms promoted a long and full circulation that allowed Stephanodiscus minulutus to bloom, presumably in response to increased phosphorus loading related to deep and vigorous circulation. The two dominant diatoms in Elk Lake, F. crotonensis and S. minutulus may reflect climatic patterns that control lake circulation. The climatically regulated occurrence of these diatoms is generally, but not specifically, comparable to their distribution in lake surface sediments throughout Minnesota. A combination of regional and lake-specific studies on the controls of diatom succession and distribution provides climatic insights for interpreting paleolimnogical records of diatoms.     

Recent environmental change and trace metal pollution in World Heritage Bathurst Harbour, southwest Tasmania, Australia

Bathurst Harbour in World Heritage southwest Tasmania, Australia, is one of the world’s most pristine estuarine systems. At present there is a lack of data on pollution impacts or long-term natural variability in the harbor. A ca. 350-year-old ²¹⁰Pb-dated sediment core was analysed for trace metals to track pollution impacts from local and long-range sources. Lead and antimony increased from AD 1870 onwards, which likely reflects remote (i.e. mainland Australian and global) atmospheric pollution sources. Variability in the concentrations of copper and zinc closely followed the history of mining activities in western Tasmania, which began in the AD 1880s. Tin was generally low throughout the core, except for a large peak in AD 1989 ± 0.5 years, which may be a consequence of input from a local small-scale alluvial tin mine. Changes in diatom assemblages were also investigated. The diatom flora was composed mostly of planktonic freshwater and benthic brackish-marine species, consistent with stratified estuarine conditions. Since mining began, however, an overall decrease in the proportion of planktonic to benthic taxa occurred, with the exception of two distinct peaks in the twentieth century that coincided with periods of high rainfall. Despite the region’s remoteness, trace metal analyses revealed evidence of atmospheric pollution from Tasmanian and possibly longer-range mining activities. This, together with recent low rainfall, appears to have contributed to altering the diatom assemblages in one of the most pristine temperate estuaries in the world.     

A 12,400 14c yr Offshore Diatom Record From East Central Lake Victoria, East Africa

The diatom record of V95-2P, a 7.6 m long sediment core collected from 67 m depth, is the first from the east central portion of Lake Victoria. A soil horizon developed at the coring site shortly before 12,400 ¹⁴C yr BP due to a lakewide desiccation event. The radiocarbon chronology of the older half of this core is problematic, but if our estimated chronology is correct, then aridity and evaporative concentration of the lake are indicated by the presence of Thalassiosira rudolfi from > 12,400 BP to about 10,000 BP. Abundant Aulacoseira and generally rising biogenic silica concentrations may reflect enhanced water column mixing and rising precipitation:evaporation ratios ca. 10,000-8400 BP. A lakewide reorganization of diatom assemblages occurred around 7200 BP, when Aulacoseira nyassensis largely replaced A. granulata and after which rainfall and wind-driven mixing became more seasonally restricted. Pronounced reductions in offshore diatom deposition, from about 8300-5800 BP and after 3500 BP, may have been related to declines in the duration and/or intensity of wind-driven mixing. Increased aridity, and possibly deforestation in the lake basin, is indicated after 1400 BP.     

Variability in diatom and chrysophyte assemblages and inferred pH: paleolimnological studies of Big Moose Lake,New York,USA

We measured variability in the composition of diatom and chrysophyte assemblages, and the pH inferred from these assemblages, in sediment samples from Big Moose Lake, in the Adirondack Mountains of New York. Replicate samples were analyzed from (1) a single sediment core interval, (2) 12 different intervals from each of 3 separate cores, and (3) 10 widely spaced surface sediment samples (0–1 cm). The variability associated with sample preparation (subsampling, processing, and counting) was relatively small compared to between-core and within-lake variability. The relative abundances of the dominant diatom taxa varied to a greater extent than those of the chrysophyte scale assemblages. Standard deviations of pH inferences for multiple counts from the same sediment interval from diatom, chrysophyte, and diatom plus chrysophyte inference equations were 0.04 (n=8), 0.06 (n=32), and 0.06 (n=8) of a pH unit, respectively. Stratigraphic analysis of diatoms and chrysophytes from three widely spaced pelagic sediment cores provided a similar record of lake acidification trends, although with slight differences in temporal rates of change. Average standard deviations of pH inferences from diatom, chrysophyte and diatom plus chrysophyte inference equations for eight sediment intervals representing similar time periods but in different cores were 0.10, 0.20, and 0.09 pH unit, respectively. Our data support the assumption that a single sediment core can provide an accurate representation of historical change in a lake. The major sources of diatom variability in the surface sediments (i.e., top 1.0 cm) were (1) differences in diatom assemblage contributions from benthic and littoral sources, and (2) the rapid change in assemblage composition with sediment depth, which is characteristic of recently acidified lakes. Because scaled chrysophytes are exclusively planktonic, their spatial distribution in lake sediments is less variable than the diatom assemblages. Standard deviations of pH inferences for 10 widely spaced surface sediment samples from diatom, chrysophyte and diatom plus chrysophyte inference equations were 0.21, 0.09, and 0.16 of a pH unit, respectively.     

A weighted-averaging regression and calibration model for inferring lakewater salinity from fossil diatom assemblages in saline lakes of the Vestfold Hills: a new tool for interpreting Holocene lake histories in Antarctica

The relationship between surface sediment diatom assemblages and measured limnological variables in thirty-three coastal Antarctic lakes from the Vestfold Hills was examined by constructing a diatom-water chemistry dataset. Previous analysis of this dataset by canonical correspondence analysis revealed that salinity accounted for a significant amount of the variation in the distribution of the diatom assemblages. Weighted-averaging regression and calibration of this diatom-salinity relationship was used to establish a transfer function for the reconstruction of past lakewater salinity from fossil diatom assemblages. Weighted-averaging regression and calibration with classical deshrinking provided the best model for salinity reconstructions and this was applied to the fossil diatom assemblages from one of the saline lakes in the Vestfold Hills in order to assess its potential for palaeosalinity and palaeoclimate reconstruction.     

Late Holocene thermokarst variability inferred from diatoms in a lake sediment record from the Lena Delta, Siberian Arctic

Thermokarst lakes in the Siberian Arctic contain sediment archives that can be used for paleoenvironmental inference. Until now, however, there has been no study from the inner Lena River Delta with a focus on diatoms. The objective of this study was to investigate how the diatom community in a thermokarst lake responded to past limnogeological changes and what specific factors drove variations in the diatom assemblage. We analysed fossil diatom species, organic content, grain-size distribution and elemental composition in a sediment core retrieved in 2009 from a shallow thermokarst lake in the Arga Complex, western Lena River Delta. The core contains a 3,000-year record of sediment accumulation. Shifts in the predominantly benthic and epiphytic diatom species composition parallel changes in sediment characteristics. Paleoenvironmental and limnogeological development, inferred from multiple biological and sedimentological variables, are discussed in the context of four diatom zones, and indicate a strong relation between changes in the diatom assemblage and thermokarst processes. We conclude that limnogeological and thermokarst processes such as lake drainage, rather than direct climate forcing, were the main factors that altered the aquatic ecosystem by influencing, for example, habitat availability, hydrochemistry, and water level.     

Palaeolimnological evidence for recent climatic change in lakes from the northern Urals, arctic Russia

The recent sediments from two deep arctic lakes, Mitrofanovskoe and Vanuk-ty, situated in the permafrost belt within the Bolshezemelskaya Tundra in the northern Ural region, were studied for diatoms, chironomids, spheroidal carbonaceous particles and stable lead isotopes. The magnitudes and rates-of-change in diatom and chironomid assemblages were numerically estimated. Instrumental climate records were used to assess statistically the amount of variance in diatom and chironomid data explained by temperature. August and September air temperatures have a statistically significant effect on diatom composition at both lakes. At Mitrofanovskoe Lake, major compositional changes in diatom and chironomid assemblages occurred at the turn of the 20th century and might be related to the regional increase in temperature. Chironomid-inferred air temperature also increased by approximately 1 °C since the early 1900s. At both lakes diatom compositional changes, coincident with the increase in June and September temperatures, also occurred in the late 1960s. These compositional changes are correlated with the increase in diatom production, sediment organic content and diatom species richness, and are likely to be a diatom response to the lengthening of the growing season. These changes are also correlated with the circum-Arctic temperature increase from the 1960s. A chironomid response to the late 1960s temperature increase was less pronounced at both lakes. Pollution levels are relatively low and pollution history is unrelated to ecological changes. Both lead isotopes and spheroidal carbonaceous particles show a clear atmospheric pollution signal, peaking in the 1980s.     

Evidence of the North Atlantic Oscillation in varve composition and diatom assemblages from recent, annually laminated sediments of Lake Belau, northern Germany

The recent sediment record of Lake Belau (Schleswig–Holstein, Germany), deposited in the period 1945–2002, was compared with instrumental meteorological and limnological data. The sediments deposited during this period are annually laminated. A varve chronology was established and supported by ¹³⁷Cs measurements. Micro-facies and diatom assemblage composition analyses were confirmed in thin sections and compared statistically with limnological and meteorological data. Comparison of phytoplankton data with diatom assemblage data from the sediment for the time interval from 1988 to 1999 proved that the sediments reflect limnological processes in the lake and record seasonal changes in the primary producer communities. Among the climatological data, the number of contiguous ice days (days with maximal temperatures ≤0 °C) and the state of the winter NAO are strong predictors for micro-facies development and diatom assemblage composition. Furthermore, solar and local (nutrient input) influences are visible in the diatom assemblage compositions. Our study illustrates the high potential for using analyses of micro-facies and diatom assemblages to reconstruct past weather conditions in varved sediments of Lake Belau.     

Diatom and chrysophyte functions and inferences of post-industrial acidification and recent recovery trends in Killarney lakes (Ontario, Canada)

The surface sediment diatom and chrysophyte assemblages from 33 Sudbury lakes were added to our published 72 lake data set to expand and refine the diatom and chrysophyte-based inference models that we had earlier developed for this region. Our calibration data set now includes 105 lakes, representing gradients for multiple environmental variables (e.g., lakewater pH, metals, and transparency). The revised models are based on the weighted averaging calibration and regression approach and include bootstrap error estimates. The pH model was the strongest (r² _boot = 0.75, RMSE _boot = 0.50). The chrysophyte-inferred pH model (r² _boot = 0.79, RMSE _boot = 0.48) that we developed was as robust as the diatom pH model. Diatom and chrysophyte inferred pH models were then applied to top (surface sediments representing current conditions) and bottom (generally from > 30 cm deep representing pre-industrial conditions) sediment diatom and chrysophyte assemblages of 19 Killarney area lakes near Sudbury. The top and bottom inferred pH results were compared to early-1970s measured pH data. These data suggest that, although many of the poorly buffered Killarney lakes had experienced acidification, marked pH recovery has occurred in many lakes within the last 25 years. Despite the stunning pH recovery, the present-day diatom and chrysophyte assemblages are significantly different from assemblages present during pre-industrial times. Our results suggest that biological recovery may require more time than chemical recovery. It is also likely that these lakes may never recover biologically because other anthropogenic stressors (e.g., climate warming and increased exposure to UV-B radiation) may now have greater influence on biological communities in Killarney/Sudbury area lakes than acidification.     

The use of diatom records to establish reference conditions for UK lakes subject to eutrophication

A knowledge of pre-disturbance conditions is important for setting realistic restoration targets for lakes. For European waters this is now a requirement of the European Council Water Framework Directive where ecological status must be assessed based on the degree to which present day conditions deviate from reference conditions. Here, we employ palaeolimnological techniques, principally inferences of total phosphorus from diatom assemblages (DI-TP) and classification of diatom composition data from the time slice in sediment cores dated to ~1850 AD, to define chemical and ecological reference conditions, respectively, for a range of UK lake types. The DI-TP results from 169 sites indicate that reference TP values for low alkalinity lakes are typically <10 μg L⁻¹ and in many cases <5 μg L⁻¹, whilst those for medium and high alkalinity lakes are in the range 10–30 and 20–40 μg L⁻¹, respectively. Within the latter two alkalinity types, the deeper waters (>3 m mean depth) generally had lower reference TP concentrations than the shallow sites. A small group of shallow marl lakes had concentrations of ~30 μg L⁻¹. Cluster analysis of diatom composition data from 106 lakes where the key pressure of interest was eutrophication identified three clusters, each associated with particular lake types, suggesting that the typology has ecological relevance, although poor cross matching of the diatom groups and the lake typology at type boundaries highlights the value of a site-specific approach to defining reference conditions. Finally the floristic difference between the reference and present day (surface sample) diatom assemblages of each site was estimated using the squared chord distance dissimilarity coefficient. Only 25 of the 106 lakes experienced insignificant change and the findings indicate that eutrophication has impacted all lake types with >50% of sites exhibiting significant floristic change. The study illustrates the role of the sediment record in determining both chemical and ecological reference conditions, and assessing deviation from the latter. Whilst restoration targets may require modification in the future to account for climate induced alterations, the long temporal perspective offered by palaeolimnology ensures that such changes are assessed against a sound baseline.     

Sedimentary DNA versus morphology in the analysis of diatom-environment relationships

The Arctic treeline ecotone is characterised by a steep vegetation gradient from arctic tundra to northern taiga forests, which is thought to influence the water chemistry of thermokarst lakes in this region. Environmentally sensitive diatoms respond to such ecological changes in terms of variation in diatom diversity and richness, which so far has only been documented by microscopic surveys. We applied next-generation sequencing to analyse the diatom composition of lake sediment DNA extracted from 32 lakes across the treeline in the Khatanga region, Siberia, using a short fragment of the rbcL chloroplast gene as a genetic barcode. We compared diatom richness and diversity obtained from the genetic approach with diatom counts from traditional microscopic analysis. Both datasets were employed to investigate diversity and relationships with environmental variables, using ordination methods. After effective filtering of the raw data, the two methods gave similar results for diatom richness and composition at the genus level (DNA 12 taxa; morphology 19 taxa), even though there was a much higher absolute number of sequences obtained per genetic sample (median 50,278), compared with microscopic counts (median 426). Dissolved organic carbon explained the highest percentage of variance in both datasets (14.2 % DNA; 18.7 % morphology), reflecting the compositional turnover of diatom assemblages along the tundra-taiga transition. Differences between the two approaches are mostly a consequence of the filtering process of genetic data and limitations of genetic references in the database, which restricted the determination of genetically identified sequence types to the genus level. The morphological approach, however, allowed identifications mostly to species level, which permits better ecological interpretation of the diatom data. Nevertheless, because of a rapidly increasing reference database, the genetic approach with sediment DNA will, in the future, enable reliable investigations of diatom composition from lake sediments that will have potential applications in both paleoecology and environmental monitoring.