Depth to the apparent redox potential discontinuity (aRPD) as a parameter of interest in marine benthic habitat quality models

The usefulness of the apparent redox potential discontinuity (aRPD) in assessments of marine benthic habitat quality was explored at two intertidal mudflats along the north Pacific coast of Canada. Two transects were established at each intertidal site, with three sediment biogeochemistry cores collected from each transect four times over the summer of 2016. Measurements of the sediment pore water dissolved oxygen (DO) content and redox (Eh) conditions were taken at the surface of the core (measured vertically), as well as at increasing depths (1 cm between readings) into the sediment (measured horizontally through predrilled holes in the biogeochemistry corer). While oxic, anoxic, oxidized, and reduced sediment pore water was observed above and below the aRPD, in general, sediment above the aRPD had higher DO content, and higher Eh values than sediment below the aRPD. Therefore, the aRPD depth can be used as a relative indicator of sediment pore water DO and Eh conditions: sediment with a deeper aRPD depth has more available DO, and the pore water has higher Eh values (more oxidized or less reduced) than sediment with a shallower aRPD depth. As such, the aRPD depth is a useful parameter to include in models that assess the quality of marine benthic habitats.     

Apparent redox potential discontinuity (aRPD) depth as a relative measure of sediment oxygen content and habitat quality

As hypoxic conditions spread in our oceans, indices that quickly and efficiently assess oxygen content in sediment pore water, and habitat quality are increasingly becoming desirable. Depth to the appa...     

Differential kinetics and temperature dependence of abiotic and biotic processes controlling the environmental fate of TNT in simulated marine systems

This work seeks to understand how the balance of abiotic and biotic kinetic processes in sediments control the residual concentration of TNT in marine systems after release from ocean-dumped source. Kinetics of TNT disappearance were followed using marine sediments at different temperatures and under both biotic and presumably abiotic conditions (through sodium azide addition). Sediments exhibiting the highest rate of TNT disappearance under biotic conditions also exhibited the highest sorption affinity for TNT under abiotic conditions. Significant temperature dependence in the abiotic processes was observed in the diffusion coefficient of TNT and not sediment sorption affinity. At higher temperature, kinetics of biotic processes outpaced abiotic processes, but at low temperature, kinetics of abiotic processes were much more significant. We concluded that the differential influence of temperature on the kinetics of abiotic and biotic processes could provide distinguishing predictions for the potential residual concentration of TNT contamination in marine-sediment systems.     

Spatial and temporal changes in benthic communities of the Galician continental shelf after the Prestige oil spill

Two years after the Prestige oil spill (POS) an assessment of the effects on benthic fauna was carried out using the data obtained in five multidisciplinary surveys. Otter trawl, beam trawl, suprabenthic sled and box corer were used to study the main benthic compartments, along eight transects perpendicular to the coastline. Beam trawl was also employed to quantify the amount of tar aggregates on the continental shelf. No significant correlations between tar aggregates and species richness, biomass and diversity of benthic communities were found. This result was corroborated when the role of depth, season, latitude and sediment characteristics was examined by canonical ordination, in which POS-related variables had low influence on spatial distribution patterns. Depth and sediment grain diameter profoundly influence epibenthic communities. Sediment organic content is a third key variable for the infaunal, suprabenthic and lower-sized epibenthic communities, but not for the larger epibenthic communities. Nevertheless, a decrease in the densities of several epibenthic indicators was detected the first year after spill, followed by a noteworthy recovery in 2004. Non-macroscopic toxicity and some oceanographic agents are suggested as possible causes of these shifts.     

Die Leistungen hydrischer Ökosysteme: Resultat ihrer Struktur

The unity of the structure, function and performance of an ecosystem and the importance of the biotic factors are represented by the example of the storage reservoir. Besides the morphometric relation of the trophogenic layer to the tropholytic one, the effect of the stability and mixing depth as well as of the o-PO₄ content on the phytoplankton development is demonstrated. The secondary production of zooplankton is described with respect to its interaction with phytoplankton and the specific relations between the available food and the greazing pressure of predators for the structure of populations of Daphnia are treated in particular. The practical consequences resulting from abiotic and biotic structural features for water quality are pointed out.     

Prediction of the consumption rates for juvenile Atlantic salmon (Salmo salar L.) on the scale of habitat patches: Development of empirical models based on stomach contents

Rivers and streams are unstable environments in which estimation of energetic costs and benefits of habitat utilization are the daunting exercise. Empirical models of food consumption may be used to estimate energetic benefits based on abiotic and biotic conditions in patches of habitat. We performed thirty daily surveys of fish stomach contents to estimate the consumption rates for juvenile Atlantic salmon (Salmo salar) in a river. The data were used to assess whether variations of daily consumption rates existed within the river, and to develop empirical models that could predict fish consumption rates using abiotic and biotic conditions as independent variables. Daily consumption rates based on stomach content surveys in the field (range: 0.15–1.49 g dry/(100 g wet day)) varied significantly depending on habitat patch (500–1000 m²), summer period, and sampling year. Variables such as water temperature, numerical density of salmon, water depth and moon phase explained 83–93% of the variations in daily food consumption rates. Daily consumption rates tended to increase with water temperature and depth, and were also higher near a full moon. However, they tended to decrease with the numerical density of salmon. Our work suggests that empirical models based on independent variables that are relatively simple to estimate in the field may be developed to predict fish consumption rates in different habitat patches in a river.     

The significance of identification of nano-size particles in freshwater bodies: Case study of Lake Ladoga

The effect of abiotic and biotic factors on the properties of nano-size particles in freshwater bodies is considered. Field studies of the aquatic environments of Lake Ladoga ecosystem provided an experimental confirmation of the total water mineralization and organic matter content in the formation of nano-size particle properties under natural conditions.     

Variations in benthic fauna underneath an effluent mixing zone at a marine oil terminal in Port Valdez, Alaska

The distributions of hydrocarbons and infauna in sediments below a permitted mixing zone for the disposal of treated ballast waters in Port Valdez, Alaska were examined annually, 1999–2001. The associations of biological measures and the abundance of selected benthic organisms to total aromatic hydrocarbons (TARO) ranged up to large-sized effects, as compared against minimum-effect criteria (|r|0.63). The apparent sensitivity of three polychaete worms to low levels of hydrocarbons makes them particularly useful as indicators of future changes in spatial distributions of hydrocarbons associated with discharged effluent. In 2001, sediment TARO concentrations decreased and the correlation values of TARO to biotic variables were generally less than in 1999 and 2000. Evidence supports a conclusion of a strong but spatially limited association of some fauna with accumulations of petroleum hydrocarbons in these sediments.     

Amelioration of marine farming impact on the benthic environment using artificial reefs as biofilters

An in situ monitoring of the sediment characteristics and macrobenthic communities was undertaken at a marine fish culture site in subtropical waters of Hong Kong before and after the deployment of biofilters which were made of cement concrete artificial reef (AR) structures. According to the distance to the boundary of the fish cages, 6 points were selected as sampling stations: 2 at the fish cages, 2 near the boundary of the fish culture area, and 2 reference sites further away from the culture area. Bimonthly sediment samples were collected for analysis of silt-clay fraction (SCF), moisture content (MC), total organic carbon (TOC), total Kjeldahl nitrogen (TKN) and total phosphorus (TP). The macrobenthos (>0.5mm) present in the sediment were sorted, identified and enumerated. TOC, TKN and TP levels at the fish cage stations were consistently higher than those at the reference stations over the 1-year pre-AR and 2-year post-AR deployment monitoring period. The diversity of macrofauna was significantly reduced at the fish cage stations relative to the reference sites. The intermediary stations near the fish culture area showed a transitional state of disturbance. Over the 2-year post-AR deployment period, TOC, TKN and TP showed a decreasing trend at the fish cage and intermediary stations. More diverse macrofaunal communities were recorded at the fish cage stations, with species diversity H'increasing from 0-1 at the beginning of the AR deployment to H'>2 at the end of the study. The present results demonstrated that artificial reefs can improve the benthic abiotic environment and biotic conditions beneath fish rafts which are deteriorated due to farming activities.     

Comparison of methods for integrating biological and physical data for marine habitat mapping and classification

An important first step in marine spatial planning and ecosystem-based management efforts is the creation of benthic habitat maps that allow scientists and managers to understand the distribution of living and non-living resources on the seafloor. However, the location of boundaries between and composition of habitats is highly dependent on the approach taken to integrate abiotic and biotic information. The purpose of this study was to test “top-down” and “bottom-up” approaches for integrating physical and biological data derived from commonly used sub-tidal benthic mapping tools to create a habitat map compatible with the US Coastal and Marine Ecological Classification Standard (CMECS). We found that a top-down framework, where we tested for differences in macrofauna assemblages among side scan sonar facies, defined two broad-scale and general habitats. Using the bottom-up approach, where patterns in abiotic and biotic variables were examined with multivariate statistics (BEST, LINKTREE, ANOSIM, SIMPER), we generated seven biotopes based on the macrofauna abundance, percent sand, water depth, and backscatter standard deviation that corresponded well to, but provided more fine-scale detail than the top-down habitats. We were able to use the statistical relationship between abiotic variables and macrofauna assemblages in the LINKTREE to predict the spatial distribution of assemblages over ∼50% of the study area. We created a local catalogue of biotopes specific to our study area that contributes to the CMECS library. In addition, we were able to fully map CMECS Geoform, Surface Geology, and Biotic Cover Components. This mapping effort represented real progress toward reconciling the “data density mismatch” between physical and biological mapping methods, and it provided further evidence that using a bottom-up methodology preserves species–environment relationships.     

Effects of industrial outfalls on tropical macrobenthic sediment communities in Reunion Island (Southwest Indian Ocean)

Temporal changes in the composition of soft bottom macrobenthic assemblages at Reunion Island (Southwest Indian Ocean) were studied in the context of a long-term environmental monitoring programme studying the impacts of effluents of industrial sugar cane refineries that are transferred to shallow and deep coastal environments by different pathways: surface discharge and deep underground injection. Seven stations (between 20 and 160 m depth) were surveyed between 1994 and 2003 on the industrial zone. One additional station was surveyed on a reference site. Spatio-temporal changes in the composition of macrobenthic communities were assessed using several diversity indices, ABC curves, MDS and associated ANOSIM tests and biotic indices. Among the 171 taxa recorded, polychaetes were dominant (89 species), followed by crustaceans and molluscs. The analysis of spatial changes in the composition of macrobenthos showed the existence of distinct benthic communities along the depth gradient. Temporal changes in macrobenthos composition were most prominent at the shallowest station. They mainly corresponded to the decline of several initially dominant taxa and the increase of the Eunicid polychaete Diopatra cuprea. This station further showed increasing macrofaunal abundance, biomass and sediment organic content over time, concomitant with decreasing sediment grain sizes. In deeper environments, temporal changes were much smaller. Macrofaunal abundance and species richness increased progressively, suggesting a moderate impact on benthic ecosystems resulting from slight enrichments due to effluents rich in organic matter. Our results highlight an original response to disturbance pattern involving opportunistic Eunicidae species (D. cuprea) not previously described. Moreover, they allow for the comparison of the impact on macrofauna caused by industrial effluents exported by two distinct and different pathways in a tropical coastal high-energy marine environment.     

Early warning indicators for river nutrient and sediment loads in tropical seagrass beds: a benchmark from a near-pristine archipelago in Indonesia

In remote, tropical areas human influences increase, potentially threatening pristine seagrass systems. We aim (i) to provide a bench-mark for a near-pristine seagrass system in an archipelago in East Kalimantan, by quantifying a large spectrum of abiotic and biotic properties in seagrass meadows and (ii) to identify early warning indicators for river sediment and nutrient loading, by comparing the seagrass meadow properties over a gradient with varying river influence. Abiotic properties of water column, pore water and sediment were less suitable indicators for increased sediment and nutrient loading than seagrass properties. Seagrass meadows strongly responded to higher sediment and nutrient loads and proximity to the coast by decreasing seagrass cover, standing stock, number of seagrass species, changing species composition and shifts in tissue contents. Our study confirms that nutrient loads are more important than water nutrient concentrations. We identify seagrass system variables that are suitable indicators for sediment and nutrient loading, also in rapid survey scenarios with once-only measurements.     

Bacterial and organic matter distribution in the sediments of the Thracian Sea (NE Aegean Sea)

Recently, black carbon has been introduced as the form of carbon that may be separated from the biologically mediated carbon cycle thereby representing the non-bioavailable fraction of the estimated organic carbon. It has been speculated that the bioavailability of organic matter may be a limiting factor for the presence of active bacteria within the sediments. In order to address this question, marine sediments were collected from the Thracian Sea (Eastern Mediterranean), a complex system impacted by riverine inputs and Black Sea water masses. In addition to counts of total bacteria, we estimated the fraction of active bacteria by using a destaining step to the DAPI staining method. Black carbon was also estimated following the thermal oxidation method in order to determine the fraction of the refractory organic matter. The fraction of black carbon to total organic carbon varied from 16% to 53% indicating that black carbon constitutes a significant pool of sedimentary organic carbon in the Thracian sea. A fraction ranging from 18% to 97% was scored as nucleoid containing cells. We did not record any significant differences in the fraction of nucleoid-containing bacteria among sediment depths (P<0.05) indicating that there was no accumulation of dead bacterial cells with depth. The same was observed for the fraction of black carbon and bioavailable organic carbon with sediment depth (P<0.05) indicating that benthic consumers are not the key regulators of the organic matter pool in these sediments but have a minor effect. A possible reason for these observations and for the uncoupling between the active bacterial fraction and the bioavailability of organic matter could be (i) the presence of refractory components in the estimated bioavailable organic matter and (ii) the hydrological and geological complexity of the study area. The North Aegean marginal slopes are highly unstable experiencing frequent seismic events. These events are capable of inducing sediment transport from the upper slopes thus altering the entire sediment profile. On the other hand, the significant correlations that were recorded between nucleoid-containing cells and phytopigments (chlorophyll a, phaeopigments, chloroplastic pigment equivalents) at all sediment depths indicate that bacterial communities respond immediately to the deposited phytodetritus, using it as a primary source of carbon and energy. Our data suggests that the Thracian Sea sediments are by no means homogeneous and can best be described as a mosaic controlled by numerous local and regional environmental factors.     

Ecosystem history of Mississippi River-influenced continental shelf revealed through preserved phytoplankton pigments

Pigments determined by high performance liquid chromatography (HPLC) provide useful information concerning water column and epibenthic plant and microbial communities in both extant communities and accumulated sediments in lakes, estuaries and the ocean. Chlorophyll and its degradation products provide an estimate of overall biomass, and carotenoid pigments provide taxonomic biomarkers of phytoplankton. We examined the pigments preserved in sediment cores from the Louisiana continental shelf adjacent to the outflow of the Mississippi River system to document changes in phytoplankton community composition, phytoplankton abundance, and conditions of hypoxia over time. Carbon accumulated in sediments from water depths of 20-60 m is primarily derived from marine phytoplankton and represents the history of phytoplankton communities in the overlying water. There is a general increase in chlorophyll a, pheopigments, zeaxanthin, fucoxanthin and most carotenoids over time, with the change gradual from 1955 to 1970, followed by a fairly steady increase to 1997. The highest chloropigment concentrations are in cores from areas more likely to be exposed to seasonal hypoxia. These indicate an increase in eutrophication in the form of greater diatom and cyanobacterial production, or a worsening of hypoxia, or both. This trend expanded westward along the Louisiana shelf in the 1990s.     

Towards a classification of organic enrichment in marine sediments based on biogeochemical indicators

A nomogram is developed to show that pH, redox potentials (Eh_NHE) and measures of dissolved sulfides (H₂S + HS⁻ + S²⁻)(total free S²⁻) can be used to classify organic enrichment impacts in marine sediments. The biogeochemical cycle of sulfur in marine sediments is described to show that changes in macrobenthic infauna community structure associated with high levels of organic matter supply result from stress due to oxygen deficiency (hypoxia and anoxia) and toxic effects of S²⁻. The changes reflect enhancement of microbial sulfate reduction under conditions of high organic matter sedimentation and the progressive formation of hypoxic–anoxic conditions measured by decreased Eh_NHE and increased concentrations of S²⁻. The nomogram provides a basis for classification of the oxic status of marine sediments based on changes in inter-related biological and biogeochemical variables along an organic enrichment gradient.     

On the feedback between water turbidity and microphytobenthos growth in shallow tidal environments

Shallow tidal environments (e.g. bays, estuaries, lagoons) represent one of the most productive ecosystems in the world, and they are threatened by current climate change and increasing human pressure. Monitoring the bio-morphodynamic evolution of these environments is therefore a crucial task that requires a detailed and holistic scrutiny. The present study aims to investigate the temperature of the water–sediment continuum, its effect on the related microphytobenthos (MPB) growth and the related bio-stabilization of the bed sediment surface under different water depth and water turbidity conditions. We investigated the vertical energy transfer and the temperature dynamics by applying a 1-D model to a shallow coastal lagoon. Our results show that the water temperature does not substantially change under different turbidity conditions, whereas the sediment temperature exhibits important changes. Two major factors driving the MPB photosynthetic growth are the sediment surface temperature and the light availability at the sediment bed, which can both be computed using the vertical energy transfer model. We observed that, in general, clear water conditions better promote MPB growth over the entire year. The limiting factor for the photosynthetic process is usually the light availability at the bottom, which increases under clear water conditions. As MPB provides a bio-stabilizing effect on the bed sediments by producing a biofilm on the sediment surface that reduces sediment resuspension, our results suggest a positive feedback between MPB growth and water column turbidity. Furthermore, MPB growth and the related sediment bio-stabilization are clearly affected by the seasonal variation of surface sediment temperature and light availability. This seasonal variation of MPB growth rate and surface sediment bio-stabilization must be considered when studying the long-term morphodynamic evolution of tidal environments. © 2018 John Wiley & Sons Ltd.     

Quantitative changes in sedimentary chlorophyll in the bed sediment of the Mikolajki Lake during the post-glacial period

Summary The thickness of the bed sediment 5·70 m of the Mikolajki Lake (Central Mazur District) was measured at a depth of 18·5 m by means of a vertical core sampler. In the samples taken from this profile the amount of sedimentary chlorophyll in relation to the dry mass of the sediment, the percentage of organic matter content and the absolute water content were determined. From analyses of the amount of sedimentary chlorophyll and organic matter in the Mikolajki Lake sediment, two stages in the development of the lake during the post-glacial period were distinguished which in their general outline corresponded to the climatic changes described byBlytt andSernander. During the periods when the climate was cold and humid the proportion of sedimentary chlorophyll and organic matter was smaller than during the periods of dry and warm climatic conditions when the lakes frequently became, for example during the boreal period. In addition, the author suggests that two layers originating from the humid period and two layers from the dry periods may be distinguished in the upper part of the profile. The former two would seem to correspond to the subatlantic period, the two latter to the neoboreal period.     

Depth-related influences on biodegradation rates of phenanthrene in polluted marine sediments of Puget Sound, WA

A whole-core injection method was used to determine depth-related rates of microbial mineralization of (14)C-phenanthrene added to both contaminated and clean marine sediments of Puget Sound, WA. For 26-day incubations under micro-aerobic conditions, conversions of (14)C-phenanthrene to (14)CO(2) in heavily PAH-contaminated sediments from two sites in Eagle Harbor were much higher (up to 30%) than those in clean sediments from nearby Blakely Harbor (<3%). The averaged (14)C-phenanthrene degradation rates in the surface sediment horizons (0-3 cm) were more rapid (2-3 times) than in the deeper sediment horizons examined (>6 cm), especially in the most PAH polluted EH9 site. Differences in mineralization were associated with properties of the sediments as a function of sediment depth, including grain-size distribution, PAH concentration, total organic matter and total bacterial abundance. When strictly anaerobic incubations (in N(2)/H(2)/CO(2) atmosphere) were used, the phenanthrene biodegradation rates at all sediment depths were two times slower than under micro-aerobic conditions, with methanogenesis observed after 24 days. The main rate-limiting factor for phenanthrene degradation under anaerobic conditions appeared to be the availability of suitable electron acceptors. Addition of calcium sulfate enhanced the first order rate coefficient (k(1) increased from 0.003 to 0.006 day(-1)), whereas addition of soluble nitrate, even at very low concentration (<0.5 mM), inhibited mineralization. Long-term storage of heavily polluted Eagle Harbor sediment as intact cores under micro-aerobic conditions also appeared to enhance anaerobic biodegradation rates (k(1) up to 0.11 day(-1)).     

Signal crayfish burrowing,bank retreat and sediment supply to rivers: A biophysical sediment budget

Burrowing into riverbanks by animals transfers sediment directly into river channels and has been hypothesised to accelerate bank erosion and promote mass failure. A field monitoring study on two UK rivers invaded by signal crayfish (Pacifastacus leniusculus) assessed the impact of burrowing on bank erosion processes. Erosion pins were installed in 17 riverbanks across a gradient of crayfish burrow densities and monitored for 22 months. Bank retreat increased significantly with crayfish burrow density. At the bank scale (<6 m river length), high crayfish burrow densities were associated with accelerated bank retreat of up to 253% and more than a doubling of the area of bank collapse compared with banks without burrows. Direct sediment supply by burrowing activity contributed 0.2% and 0.6% of total sediment at the reach (1.1 km) and local bank (<6 m) scales. However, accelerated bank retreat caused by burrows contributed 12.2% and 29.8% of the total sediment supply at the reach and bank scales. Together, burrowing and the associated acceleration of retreat and collapse supplied an additional 25.4 t km⁻¹ a⁻¹ of floodplain sediments at one site, demonstrating the substantial impact that signal crayfish can have on fine sediment supply. For the first time, an empirical relation linking animal burrow characteristics to riverbank retreat is presented. The study adds to a small number of sediment budget studies that compare sediment fluxes driven by biotic and abiotic energy but is unique in isolating and measuring the substantial interactive effect of the acceleration of abiotic bank erosion facilitated by biotic activity. Biotic energy expended through burrowing represents an energy surcharge to the river system that can augment sediment erosion by geophysical mechanisms.     

Onshore-offshore gradient in reductive early diagenesis in coastal marine sediments of the Ria de Vigo, Northwest Iberian Peninsula

Early diagenetic modification of magnetic properties is an important process in marine sediments, but temporal and spatial variability of diagenetic processes have rarely been reported for recent coastal sediments. The magnetic properties of sediments from the Ria de Vigo (NW Spain) define a marked three-part zonation with depth. The uppermost zone is magnetically dominated by (titano-)magnetite. In the intermediate zone, rapid down-core dissolution of (titano-)magnetite increases the relative influence of high-coercivity magnetic minerals, which react more slowly during reductive dissolution than (titano-)magnetite. This zone is characterized by the ubiquitous occurrence of framboidal iron sulphides. Pyrite is the dominant iron sulphide, but framboidal ferrimagnetic greigite is also frequently observed in association with pyrite. The lowermost zone is characterized by an almost complete depletion of magnetic minerals associated with progressive reduction of detrital iron oxides with depth. This zonation is controlled by organic matter diagenesis, which varies with water depth and wave-induced sediment resuspension and organic matter reoxidation in the water column. This leads to a shallowing and thinning of each zone with more intense reductive diagenesis toward the interior of the ria. Such a zonation seems to be a common feature in shallow water marine environments. If preserved, the described zonation and its spatial variability provide a potential tool for detecting estuarine-like environments in the geological record. Magnetic detection of current or past reductive conditions also has important implications for assessing paleoenvironmental proxies that are sensitive to diagenetic redox state.