Molecular characterization of sulfate-reducing bacteria community in surface sediments from the adjacent area of Changjiang Estuary

Sulfate-reducing bacteria (SRB), which obtain energy from dissimilatory sulfate reduction, play a vital role in the carbon and sulfur cycles. The dissimilatory sulfite reductase (Dsr), catalyzing the last step in the sulfate reduction pathway, has been found in all known SRB that have been tested so far. In this study, the diversity of SRB was investigated in the surface sediments from the adjacent area of Changjiang Estuary by PCR amplification, cloning and sequencing of the dissimilatory sulfite reductase beta subunit gene (dsrB). Based on dsrB clone libraries constructed in this study, diversified SRB were found, represented by 173 unique OTUs. Certain cloned sequences were associated with Desulfobacteraceae, Desulfobulbaceae, and a large fraction (60%) of novel sequences that have deeply branched groups in the dsrB tree, indicating that novel SRB inhabit the surface sediments. In addition, correlations of the SRB assemblages with environmental factors were analyzed by the linear model-based redundancy analysis (RDA). The result revealed that temperature, salinity and the content of TOC were most closely correlated with the SRB communities. More information on SRB community was obtained by applying the utility of UniFrac to published dsrB gene sequences from this study and other 9 different kinds of marine environments. The results demonstrated that there were highly similar SRB genotypes in the marine and estuarine sediments, and that geographic positions and environmental factors influenced the SRB community distribution.     

Partial function prediction of sulfate-reducing bacterial community from the rhizospheres of two typical coastal wetland plants in China

Sulfate-reducing bacteria(SRB) are ubiquitous anaerobic microorganisms that play significant roles in the global biogeochemical cycle.Coastal wetlands,one of the major habitats of SRB,exhibit high sulfate-reducing activity and thus play significant roles in organic carbon remineralization,benthic geochemical action,and plant-microbe interactions.Recent studies have provided credible evidence that the functional rather than the taxonomic composition of microbes responds more closely to environmental factors.Therefore.in this study,functional gene prediction based on PacBio single molecular real-time sequencing of 16 S rDNA was applied to deterrmine the sulfate-reducing and organic substrate-decomposing activities of SRB in the rhizospheres of two typical coastal wetland plants in North and South China:Zostera japonica and Scirpus mariqueter.To this end,some physicochemical characteristics of the sediments as well as the phylogenetic structure,community composition,diversity,and proportions of several functional genes of the SRB in the two plant rhizosphere s were analyzed.The Z.japonica meadow had a higher dis similatory sulfate reduction capability than the S.mariqueter-comprising saltmarsh,owing to its larger proportion of SRB in the microbial community,larger proportions of functional genes involved in dissimilatory sulfate reduction,and the stronger ability of the SRB to degrade organic substrates completely.This study confirmed the feasibility of applying microbial community function prediction in research on the metabolic features of SRB,which will be helpful for gaining new knowledge of the biogeochemical and ecological roles of these bacteria in coastal wetlands.     

Spatial variations of bacterial community composition in sediments of the Jiaozhou Bay,China

Spatial variations of sediment microbes pose a great challenge for the estimation of anthropogenic influence on biogeochemical processes, yet remain very unclear in coastal ecosystems. Surface sediments in 9 stations from the eutrophic Jiaozhou Bay, China, were sampled, DNA was extracted within the sediments, and the 16 S rDNA was sequenced with the Illumina Hiseq sequencing. Results reveal considerable heterogeneity of sediment bacteria in the Jiaozhou Bay, of which Proteobacteria and Bacteroidetes accounted for over 75%. Bacterial alpha-diversity indices decreased generally from the outside to the inner part of the bay and from the offshore to the nearshore area. Bacterial community structures of S3, S4, S7, and S8 clustered, those of S5, S13, and S14 grouped together, while those of S6 and S10 were distinct from each other and from those of the other stations. Major class Gammaproteobacteria were more abundant at the stations with mesoeutrophic to eutrophic levels(S4, S5, S8, and S10) and less abundant at oligotrophic stations(S6, S13, and S14), while Deltaproteobacteria had an opposite distribution pattern. Overall, bacterial community composition transitioned from being Xanthomonadales-dominant at S4 and S8 to being unidentifed_Gammaproteobacteria-dominant at S5, S6, S13, and S14, while in other stations there were comparable orders. The biogeochemical processes correspondingly changed from being nitrogen cycling-dominant at S4 and S8 to being sulfur cycling-dominant at S5, S6, S13, and S14. The bacterial distribution patterns were especially affected by the factors(dissolved organic phosphorus, DOP) in the overlying seawater due to the habitat status of P-insu fficiency in the bay. Both orders Xanthomonadales and Alteromonadales could serve as bioindicators of anthropogenic pollution to different pollution types. At last, divergent distribution patterns of individual bacterial populations in the bay were revealed, the influential environmental gradients were clarified, and the uncertainty of microbes was reduced, helping to predict environmental functions in coastal areas.     

The bacterial diversity and community composition altered in the oxygen minimum zone of the Tropical Western Pacific Ocean

The oxygen minimum zones(OMZs) are globally expanding,yet the variation pattern of microbial communities related to dissolved oxygen levels remain unclear.Spatial variability of bacterial diversity and community composition(repre sented by 16 S rRNA) of six stations was investigated within the water column in the seamount area of Tropical Western Pacific Ocean(TWPO) in May 2019.The seawater has dissolved oxygen(DO) concentration of 3.01-6.68 mg/L and the core of the oxygen minimum zones was located between the depths of 650 m and 1 750 m.The bacterial alpha-diversity showed unimodal pattern with the decreasing DO with depths and peaked in the upper oxycline(UO) of OMZs.The bacterial community structure of the mixed layer(ML) and the bottom layer clustered and separated from each other,while those of UO and the OMZ core(OM) clustered and overlapped.Overall,bacterial community composition transitioned from being Alphaproteobacteria and Gammaproteobacteria-dominant in ML to being Gammaproteobacteria and Nitrososphaeria/Deltaproteobacteria-dominant in UO and OM,and then changed to being Clostridia and unidentified Actinobacteria-dominant in the bottom layer.Moreover,both bacterial alpha-diversity and the abundant classes fitted varying sectioned functions with DO.The DO solely explained 40.37% of the variation of bacterial community composition among layers(P0.001).The predicted function profiling showed that the water column was predominant by chemoheterotrophy,cyanobacteria,and photoautotrophy in ML,by chemoheterotrophy and nitrate/sulfide cycling in UO and OM,and by chemoheterotrophy and ferme ntation in the bottom layer.Our findings revealed the DO-associated variation in bacterial diversity and community composition,and help to clarify the potential responses of microbes and their involved biogeochemical processes to the expansion and intensification of OMZs.     

Geographical distribution of general aerobic heterotrophic bacteria in surficial sediments from the Chukchi Sea and Canadian Basin

This paper determined the abundance of General Aerobic heterotrophic Bacteria(GAB) in surficial sediments from the Chukchi Sea and the Canadian basin by using MPN and discussed their geographical distribution.The result shows that the determination percentages of the GAB were high,even till 100 percentage.The abundance range and averages of GAB for 4℃and 25℃ were from 4.00×102 to 2.40×106,1.71×106 ind.·g-1(wet sample) and from 2.40×105 to 2.40×107,1.10×107 ind.·g-1(wet sample) respectively.Not only the abundance range but also the averages of GAB in 25℃ were higher than that in 4℃.The abundance of GAB in sediments show a tendency that it is roughly greater in the lower latitudinal area than in the higher latitudinal area.The abundance of GAB increased from east to west as for the longitudinal distribution.With the water depth increasing,the abundance of GAB at 4℃ decreased,but GBA at 25℃ is not changed obviously with water depth.It seems that warmer circumstantial temperature is more suitable for some GAB.     

Abundance of general aerobic heterotrophic bacteria in the Bering Sea and Chukchi Sea and their adaptation to temperature

1　IntroductionInthedeepseawithawatertemperaturelowerthan5℃andtheseabottom ,theor ganicmattersareoxidizedmainlybytheaerobicbacteria (BenderandHeggie 1 984;Her bert 1 986) ,whichmeansthattheaerobicbacteriainthisenvironmentareratherabun dant.Thearcticseaareaisanareawhereenvironmentispermanentlycold ,butsomere searchresults (Sahmetal.1 998)indicatethattherearedominantbacteria eubacteriainthearcticseawaterandsediment,andtheiradaptationtotemperaturehasnosubstantialdifferenceincomparisonwiththatof…     

Temporal and spatial variations of bacterial community compositions in two estuaries of Chaohu Lake

The distinctive estuary hydrodynamics and nutrient input make the estuary ecosystem play a key role in lake ecosystems. The Nanfei River and Zhaohe River are two main inlets of Chaohu Lake, Anhui, East China. We selected estuaries of the two rivers as representative areas to study temporal and spatial changes of bacterial communities. In August (summer) and November (autumn) 2016 and February (winter) and May (spring) 2017, 16 water and sediment samples were collected from the estuaries. Physicochemical characteristics indicate significant differences in the nutritional status and eutrophication index of the estuaries due mainly to organic input. Examination of the number of operational taxonomic units, the diversity index, the community composition, and redundancy analysis revealed the following. First, the existence of varying degrees of seasonal differences in the distribution of almost all bacteria. In addition, the species diversity in the sediment samples was higher than that in the water samples, and the dominant species differed also among these samples. Second, a large number of unknown genera were detected, especially in the sediment samples, such as unclassified Xanthomonadales incertae sedis, unclassified Anaerolineaceae, and unclassified Alcaligenaceae. Last, TP, TN, and TOC were the main influential factors that affected the bacterial community structure.     

Distribution of general aerobic heterotrophic bacteria in sediment core taken from the Canadian basin and the Chukchi Sea

The occurrence percentage and abundance of General Aerobic Hetero- trophic Bacteria （GAB） were determined by using the method of MPN for 182 sub- samples from 10 sediment cores taken from the Canadian basin and the Chukchi Sea at two different culturing temperatures. The results showed that the general occurrence percentage of GAB was quite high, average abundanees of GAB at cultured temperatares of 4℃ and 25℃ were 4.46 ×10^7 and 5.47×10^7 cells·g^-1（wt）, respectively. The highest abundance of GAB occurred at 20 -22 cm section in the sediment. GAB abundances changed among the section of sediments, but there is a trend ： the a-bundances at the middle or lower sections were lower than those at upper section. Cultivation at 25℃ could improve the occurrence percentage and abundances of GAB, which suggests that the increasing of temperature may change the living circum-stances of GAB. The differences of GAB among the latitudes areas indicated that occurrence percentage and abundances of GAB in middle latitude areas were higher than those in the higher or lower latitude areas, and were more obvious at 4℃ than those at 25℃. The GAB abundances in sediment under the shallower water seemed to be low- er than those in sediments under the deeper water and this status was more obvious at 25℃ than that at 4℃.     

Effect of climate and altitude on plant community composition and richness in Brazilian inselbergs

Plant communities are shaped by multiple factors along environmental gradients;however,studies are limited on how environmental filtering drives community composition and species richness on tropical inselbergs.We evaluate the influence of altitude and climatic variables related to temperature and precipitation on plant community composition and species richness on Brazilian inselbergs.We assume as a premise that both climate and altitude would induce changes on plant community composition and species richness at the local level.We used plant inventory data from 370 sampling units across four inselberg sites in the Atlantic Forest of Espírito Santo State,south-eastern Brazil.We tested the univariate and multivariate effects of altitude and climate variables on community composition and species richness with multiple models.Differences in species richness between inselbergs were evaluated using sample-based data to estimate rarefaction and extrapolation curves.In addition,differences in species composition and taxonomic beta diversity were examined via novel frequency-based metrics.A contrasting climate pattern was observed between the inselberg sites,with south sites being wet compared to the dry conditions found in northern sites.Species richness by rarefaction showed a similar pattern within regional sites;however,there were marked differences between regions.Species richness and beta diversity showed significant differences among sites,with higher values in southern sites than in northern sites.In a multi-model comparison between inselberg sites,altitude significantly influenced community composition and species richness and explained more variance than climate models.This finding suggested that climate could act to some extent on these tropical inselbergs;however,altitude was a better predictor of plant community composition and species richness at the local level.     

Spatio-temporal distribution of net-collected phytoplankton community and its response to marine exploitation in Xiangshan Bay

To explore the spatial-temporal distribution of the phytoplankton community and evaluate the combined effects of marine resource exploitation, net-collected phytoplankton and physical-chemical parameters were investigated in the Xiangshan Bay during the four seasons of 2010. A total of eight phyla, 97 genera, and 310 species were found, including 232 diatom species, 45 dinoflagellate species and 33 other taxa. The phytoplankton abundances presented a significant (P<0.001) seasonal difference with the average of 60.66×10⁴ cells/m³. Diatoms (mainly consisting of Coscinodiscus jonesianus, Cerataulina pelagica, Skeleto n ema costatum, and genus Chaetoceros) dominated the phytoplankton assemblage in all seasons. We found great spatio-temporal variation in community composition based on the multidimensional scaling and similarity analysis. Canonical correspondence analysis show that temperature, nutrition, illumination, and salinity were the main variables associated with microalgal assemblage. Compared with the previous studies, an increase in phytoplankton abundance and change in the dominant species coincided with increased exploitation activities in this bay (e.g. operation of coastal power plants, intensive mariculture, tidal flat reclamation, and industrial and agricultural development). The present findings suggest that the government should exercise caution when deciding upon developmental patterns in the sea-related economy.     

Optimization of culture conditions and medium composition for the marine algicidal bacterium Alteromonas sp. DH46 by uniform design

Harmful algal blooms (HABs) have led to extensive ecological and environmental issues and huge economic losses. Various HAB control techniques have been developed, and biological methods have been paid more attention. Algicidal bacteria is a general designation for bacteria which inhibit algal growth in a direct or indirect manner, and kill or damage the algal cells. A metabolite which is strongly toxic to the dinoflagellate Alexandrium tamarense was produced by strain DH46 of the alga-lysing bacterium Alteromonas sp. The culture conditions were optimized using a single-factor test method. Factors including carbon source, nitrogen source, temperature, initial pH value, rotational speed and salinity were studied. The results showed that the cultivation of the bacteria at 28°C and 180 r min^?1 with initial pH 7 and 30 salt contcentration favored both the cell growth and the lysing effect of strain DH46. The optimal medium composition for strain DH46 was determined by means of uniform design experimentation, and the most important components influencing the cell density were tryptone, yeast extract, soluble starch, NaNO₃ and MgSO₄. When the following culture medium was used (tryptone 14.0g, yeast extract 1.63g, soluble starch 5.0 g, NaNO₃ 1.6 g, MgSO₄ 2.3 g in 1L), the largest bacterial dry weight (7.36 g L^?1) was obtained, which was an enhancement of 107% compared to the initial medium; and the algal lysis rate was as high as 98.4% which increased nearly 10% after optimization.     

Evaluation of long-term corrosion durability and self-healing ability of scratched coating systems on carbon steel in a marine environment

Defects in protective-coating systems on steel surfaces are inevitable in practical engineering applications.A composite coating system,including a primer,middle coat and topcoat,were used to protect carbon steel from corrosion in a marine environment.Two environmental additives,glass fi bers and thiourea,were applied in the middle coat to modify the coating system.The long-term corrosion durability and self-healing ability of the scratched coating system were evaluated by multiple methods.Results of the electrochemical technologies indicated that the coating system that contained 0.5 wt.%fi bers and 0.5 wt.%thiourea presented good corrosion protection and self-healing for carbon steel when immersed in 3.5%Na Cl for 120 d.Evolution of localized corrosion factors with time,as obtained from the current distribution showed that fi bers combined with thiourea could inhibit the occurrence of local corrosion in scratched coating systems and retarded the corrosion development signifi cantly.Surface characterization suggested that adequate thiourea could be absorbed uniformly on fi bers for a long time to play an important role in protecting the carbon steel.Finally,schematic models were established to demonstrate the action of fi bers and thiourea on the exposed surface of the carbon steel and the scratched coating system in the entire deterioration process.     

Spatiotemporal variation in community structure of marine benthic ciliates in the Yellow Sea during and after macroalgal and giant jellyfish blooms

The annual bloom of the green macroalgal Ulva prolifera from May through July since 2008 and another of giant jellyfish Nemopilema nomurai from June through September have been frequent events in the Yellow Sea. However, the patterns of benthic ciliate communities during and after the blooms are still not known. In combination with analyses of benthic environmental factors, we investigated the distribution and community composition of benthic ciliates in the Yellow Sea in July and November 2011. In July, ciliates had high standing crops and diversity in the northern Yellow Sea, and in the inshore area off the southern Shandong Peninsula, where large numbers of green macroalgae accumulated. In November, the abundance, biomass and diversity of ciliates were high in the sea areas off the Shandong Peninsula and Changjiang estuary, where a large quantity of jellyfish occurred in August. Neither the abundance nor the biomass had significant difference between seasons, or between different compartments of the Yellow Sea. The species number, and both Margalef and Shannon-Wiener indices of ciliates were all significantly higher in November than in July. In both seasons, prostomateans and karyorelicteans consistently constituted the first and second most important ciliate groups in biomass; and carnivorous ciliates constituted the primary feeding type in terms of biomass as well as species richness, followed by bacterivores, algivores and omnivores. Compared with that in June 2007 when no macroalgae occurred, the percentage of small-sized bacterivores (e.g. Metacystis spp., Euplotes spp. and scuticociliates) increased in July 2011. The proportion of carnivorous ciliates increased in November, and this increased dominance of carnivorous ciliates may be a response to the increase in predominance of heterotrophic nanoflagellates, which might in turn be ascribed to an effect of green macroalgal and giant jellyfish blooms in the Yellow Sea.     

Influence of dietary n-3 LC-PUFA on growth,nutritional composition and immune function in marine fish Sebastiscus marmoratus

A 60-day feeding experiment was conducted to investigate the influence of dietary omega-3 long-chain polyunsaturated fatty acids(n-3 LC-PUFA) on growth, nutritional composition and immune function of marine fish Sebastiscus marmoratus. Five diets containing 3.6, 10.2, 18.2, 26.5, or 37.0 g/kg n-3 LC-PUFA were prepared. The results reveal significant influences of dietary n-3 LC-PUFA on the final weight, weight gain, specific growth rate, feed conversion ratio, and condition factor. As dietary n-3 LCPUFA increased, weight gain and specific growth rate increased and were significantly higher in groups fed 18.2, 26.5 and 37.0 g/kg than in groups fed 3.6 and 10.2 g/kg( P 0.05); there was no significant difference between groups fed 18.2, 26.5, or 37.0 g/kg( P 0.05). With increasing dietary n-3 LC-PUFA, eicosapentaenoic acid and docosahexenoic acid content in muscle and liver increased significantly, immunoglobulin class M content gradually increased from 9.1 to 14.8 μg/L, and lysozyme activity content increased from 1355 to 2268 U/mL. Broken line model analysis according to weight gain indicated that a dietary n-3 LC-PUFA level of 18.2 g/kg is essential for normal growth at a fat level of 125 g/kg. Therefore, appropriate dietary n-3 LC-PUFA not only promote growth and improve the n-3 LC-PUFA content, but also enhance immune function in S. marmoratus.     

Tree community composition,structure and diversity along an elevational gradient in an Andean forest of Northern Ecuador

The Andean forests of northern Ecuador are known for their high levels of plant diversity relative to the area they occupy. Typically, these forests grow on steep slopes that lead to dramatic habitat gradients across short distances. These extreme habitat gradients make the Andean forest ecosystem an excellent natural laboratory for understanding the effect of elevation on forest community diversity, structure and composition. We established 31 plots(50 m × 5 m) which are divided between two elevational transects in the cloud forest of the Siempre Verde Reserve in the western foothills of the Andes Mountains of northern Ecuador. All trees and tree ferns with a diameter at breast height(dbh) ≥ 5 cm were measured and identified. We examined changes in community composition, structure, and diversity along and between the elevational transects and three elevational zones: low(2437–2700 m), middle(2756–3052 m), and high(3163–3334 m). We found four main trends associated with the elevational gradients at this site:(1) community composition differed between the two transects and among the three elevational zones according to N-MDS, ANOSIM, and percentage of shared species, with some species having limited distributions,(2) metrics of community structure showed opposite relationships with elevation, depending on the transect, with the only significant relationship(negative) found between basal area and elevation in the open trail transect,(3) alpha diversity, in general, peaked at mid-elevations, and(4) beta diversity consistently increased with distance between plots along elevation. The complexity of changes in community composition, structure, and alpha diversity along elevation may be related to the heterogeneity of the environment on a local scale, such as topography, soil composition, and even human impact, or to dispersal limitation and should be investigated further. These changes in community composition and the relatively high beta diversity found at this site exemplify the biological complexity of montane forest, reinforcing arguments from other studies on the importance of their conservation.     

Metabolic and phylogenetic profile of bacterial community in Guishan coastal water (Pearl River Estuary), South China Sea

Characteristics of a microbial community are important as they indicate the status of aquatic ecosystems. In the present study, the metabolic and phylogenetic profile of the bacterioplankton community in Guishan coastal water(Pearl River Estuary), South China Sea, at 12 sites(S1–S12) were explored by community-level physiological profiling(CLPP) with BIOLOG Eco-plate and denaturing gradient gel electrophoresis(DGGE). Our results showed that the core mariculture area(S6, S7 and S8) and the sites associating with human activity and sewage discharge(S11 and S12) had higher microbial metabolic capability and bacterial community diversity than others(S1–5, S9–10). Especially, the diversity index of S11 and S12 calculated from both CLPP and DGGE data(H 3.2) was higher than that of others as sewage discharge may increase water nitrogen and phosphorus nutrient. The bacterial community structure of S6, S8, S11 and S12 was greatly influenced by total phosphorous, salinity and total nitrogen. Based on DGGE fingerprinting, proteobacteria, especially γ- and α-proteobacteria, were found dominant at all sites. In conclusion, the aquaculture area and wharf had high microbial metabolic capability. The structure and composition of bacterial community were closely related to the level of phosphorus, salinity and nitrogen.     

ZOOPLANKTON COMMUNITY STRUCTURE OF THE SEA SURFACE MICROLAYER NEAR NUCLEAR POWER PLANTS AND MARINE FISH CULTURE ZONES IN DAYA BAY

ＩＮＴＲＯＤＵＣＴＩＯＮＴｈｅｓｅａｓｕｒｆａｃｅｍｉｃｒｏｌａｙｅｒ (ＳＭ)ｗｉｔｈｓｐｅｃｉａｌｐｈｙｓｉｃａｌ,ｃｈｅｍｉｃａｌａｎｄｂｉｏｌｏｇｉｃａｌｐｒｏｐｅｒｔｉｅｓ,ｈａｄｂｅｅｎｗｅｌｌｄｅｓｃｒｉｂｅｄａｓａｓｉｔｅｏｆｉｎｔｅｎｓｉｖｅａｃｃｕｍｕｌａｔｉｏｎｏｆｄｉｓｓｏｌｖｅｄａｎｄｐａｒｔｉｃｕｌａｔｅｏｒｇａｎｉｃｍａｔ ｔｅｒｉｎｖｏｌｖｉｎｇｐｈｙｔｏｐｌａｎｋｔｏｎａｎｄｂａｃｔｅｒｉａ (Ｈａｒｄｙ,1 982 ) .Ｔｈｉｓｅｎｖｉｒｏｎｍｅｎｔｈａｓｇｒｅａｔｉｍｐｏｒ…     

Studies on the community structures of meiofauna and marine nematode at six stations in the Southern Yellow Sea,China

1Introduction As part of a comprehensive investigation of ecosys-tem dynamics in the Yellow Sea and East China Sea,astudy has been made of meiofauna,defined here asmetazoans passing a0.5mm sieve but retained by a0.031mm sieve.Meiofauna is an important energeticgroup in benthic small food web due to their smallsize,high abundance and fast turnover rates.Theproduction of meiofauna is equal to or higher than thatof macrofauna in estuaries,shallow waters and deepseas(Gerlach,1971;Platt and Warw…     

Effects of organic carbon consumption on denitrifier community composition and diversity along dissolved oxygen vertical profiles in lake sediment surface

At present, the understanding of the dynamics of denitrifiers at different dissolved oxygen (DO) layers under organic carbon consumption within the surface sediments remains inadequate. In this study, high-throughput sequencing and quantitative PCR targeting nirS gene were used to analyze the denitrifier abundance dynamics, community composition, and structure for aerobic (DO 0.5–6.9 mg/L), hypoxic-anoxic (DO 0–0.5 mg/L), and anoxic (DO 0 mg/L) layers in surface sediments under organic carbon consumption. Based on the analysis of nirS gene abundance, the values of denitrifying bacteria decreased with organic carbon consumption at different DO layers. When the bacterial species abundance at the genus level were compared between the high-carbon and low-carbon sediments, there was significant increase in 6 out of 36, 7 out of 36 and 6 out of 36 genera respectively for the aerobic, hypoxic-anoxic and anoxic layers. On the other hand, 14 out of 36, 9 out of 36 and 15 out of 36 genera showed significant decrease in bacterial species abundance respectively for the aerobic, hypoxic-anoxic and anoxic layers. Additionally, 14 out of 36, 20 out of 36, and 15 out of 36 genera had no change in bacterial species abundance respectively for the aerobic, hypoxic-anoxic, and anoxic layers. This indicates that the carbon utilization ability of different denitrifiers on each DO layers was generally different from each other. Diversity of denitrifying bacteria also presented significant differences in different DO layers between the high- and low-carbon content sediment layers. Moreover, under the high-carbon and low-carbon content, the abundance of nirS gene showed a high peak within the hypoxic-anoxic regions, suggesting that this region might be the main distribution area for the denitrifying bacteria within the surface sediments. Furthermore, community of unique denitrifiers occurred in different DO layers and the adaptive changes of the denitrifier community followed the organic carbon consumption.     

Shifts of sediment bacterial community and respiration along a successional gradient in a typical karst plateau lake wetland(China)

Bacteria are important regulators of carbon cycling in lakes and are central to sediment ecosystem processes. However, the sediment microbial communities and their respiratory responses to the lake wetland succession are poorly understood. In this study, we collected sediment samples from four different succession points(the Potamogeton lucens zone, the Scirpus tabernaemontani zone, the Scirpus triqueter zone, and the Juncus effusus zone) in the Caohai Wetland of the Guizhou Plateau(China). The bacterial communities at these succession points were studied using a high-throughput sequencing approach. The sediment microbial respiration(SR) was measured using static chambers in the field and basal respiration(BR) was determined in the laboratory. The results show that the dominant bacterial taxa in the sediment was Proteobacteria(34.7%), Chloroflexi(17.8%), Bacteroidetes(7.3%), Acidobacteria(6.6%), and Cyanobacteria(6.1%). Principal coordinate analysis showed that the microbial community structure differs significantly at different sampling points along the successional gradient, indicating that the bacterial community structure is sensitive to the lake wetland succession. Different hydrological regimes and soil characteristics such as NH_4~+-N, Fe~(2+), Mn~(2+), and sediment organic carbon(SOC) content may be important factors responsible for the differences in the sediment microbial characteristics of the different successional stages in the Caohai wetland. Additionally, it was found that the SR increased significantly from the P. lucens zone to the J. effusus zone, but BR had the opposite response. The shifts in the bacterial community structure along the successional gradient may be the main reason for the observed differences in sediment respiration.