Survival under chronic stress from sediment load: spatial patterns of hard coral communities in the southern islands of Singapore

Six reef sites were chosen along the west coasts of Singapore's southern islands, to: (1) quantitatively assess and compare coral community composition and structure, and recruitment rates, (2) assess the relationship between the aforementioned patterns and the environmental conditions, and (3) provide insights on potential processes that incorporate history at these study sites. Chronic exposure to high sediment load was the most obvious form of anthropogenic stress. Recruitment rates on ceramic tiles were low (1.4+/-1.0-20+/-14.7 recruits m(-2)year(-1)) but decreased towards the main island of Singapore as did hard coral cover and coral density. Coral fauna consisted of genera generally found in deeper waters (e.g., fungiids, foliose Oxypora, Leptoseris, and Echinopora) or those well adapted to turbid waters (e.g., Porites, Pectinia, Leptastrea, Montipora). Light extinction coefficient (K) and % live coral cover (%LCC) showed a strong and inverse curvilinear relationship (%LCC=13.60 *K(-3.40)). Similarly, the rate of sediment deposition (DFSPM) (Recruitment rate, RR=1.51-0.17 *DFSPM) and water clarity (RR=3.56-2.92 *K) exhibited strong and inverse relationships with recruitment rates. Although measured levels of the down-ward flux of suspended particulate matter and suspended solids were well within "normal" levels recorded in the literature, it was the proportion of benthic space, generic coral composition, and site history that offered compelling evidence of chronic exposure to increased sediment load. Clearly a reduction in both water clarity and live-coral cover has taken place since monitoring efforts began in the early 1970s, in fact coral cover has more than halved at all sites examined since the 1980s and benthic space was predominantly occupied by dead corals covered with sediment and filamentous algae.     

Small river basin and estuarine sediment fluxes: The magnitude necessary for coastal dispersion and siltation effects on a coral reef

Increasing continental suspended sediment influx to coral reefs is an example of land-sea coupling that requires the identification of sources, magnitude of transport, and controlling processes. In Brazil, a small coastal basin (Macaé River) was identified as a source of suspended sediment to a coral reef on the coast of Cape Armação dos Búzios. Biannual suspended sediment loads were measured at the basin as were fluxes within the estuary and towards the coast during eight tidal cycles. Particle load and yield from this basin were typical of small coastal basins, showing high to moderate slopes and transitional land management. However, the magnitude of the river loads was lower than the sediment transport within the estuary, indicating that the estuary amplifies river fluxes and sustains the transference of suspended sediment alongshore to the coral reef. Nonetheless, the estuary displays both suspended particle retention and export capacity and, therefore, fluxes to the coast and the coral reef occur as episodic events.     

Benthic status of near-shore fishing grounds in the central Philippines and associated seahorse densities

Benthic status of 28 near-shore, artisanal, coral reef fishing grounds in the central Philippines was assessed (2000-2002) together with surveys of the seahorse, Hippocampus comes. Our measures of benthic quality and seahorse densities reveal some of the most degraded coral reefs in the world. Abiotic structure dominated the fishing grounds: 69% of the benthos comprised rubble (32%), sand/silt (28%) and dead coral (9%). Predominant biotic structure included live coral (12%) and Sargassum (11%). Rubble cover increased with increasing distance from municipal enforcement centers and coincided with substantial blast fishing in this region of the Philippines. Over 2 years, we measured a significant decrease in benthic 'heterogeneity' and a 16% increase in rubble cover. Poor benthic quality was concomitant with extremely low seahorse densities (524 fish per km(2)). Spatial management, such as marine reserves, may help to minimize habitat damage and to rebuild depleted populations of seahorses and other reef fauna.     

Source and supply of sediment to a shoreline salient in a fringing reef environment

Reef-associated landforms are coupled to the health of the reef ecosystem which produces the sediment that forms and maintains these landforms. However, this connection can make reef-fronted coastlines sensitive to the impacts of climate change, given that any decline in ecosystem health (e.g. decreasing sediment supply) or changes to physical processes (e.g. sea level rise, increasing wave energy) could drive the sediment budgets of these systems into a net erosive state. Therefore, knowledge of both the sediment sources and transport mechanisms is required to predict the sensitivity of reef-associated landforms to future climate change. Here, we examine the benthic habitat composition, sediment characteristics (composition, texture, and age), and transport mechanisms and pathways to understand the interconnections between coastal morphology and the reef system at Tantabiddi, Ningaloo Reef, Western Australia. Benthic surveys and sediment composition analysis revealed that although live coral accounts for less than 5% of the benthic cover, coral is the dominant sediment constituent (34% on average). Sediment ages (²³⁸U/²³⁰Th) were mostly found to be thousands of years old, suggesting that the primary sediment source is relic reef material (e.g. Holocene reef framework). Sediment transport across the lagoon was quantified through measurements of ripple migration rates, which were found to be shoreward migrating and responsible for feeding the large shoreline salient in the lee of the reef. The derived sediment fluxes were comparable with previously measured rates of sediment production by bioerosion. These results suggest that sediment budgets of systems dependent on old (>10³ years) source materials may be more resilient to climate change as present-day reef health and community composition (i.e. sources of ‘new’ carbonate production) have limited influence on sediment supply. Therefore, the vulnerability of reef-associated landforms in these systems will be dictated by future changes to mechanisms of sediment generation (e.g. bioerosion) and/or physical processes. © 2018 John Wiley & Sons, Ltd.     

Changes in octocoral communities and benthic cover along a water quality gradient in the reefs of Hong Kong

Cover of the main reef benthic groups, and abundances and taxonomic richness of octocorals were surveyed in the reefs of Hong Kong, and related to spatial and water quality gradients. Nutrient and particle concentrations are high throughout the area, with concentrations declining from the south towards the north-eastern region. Regression tree analyses showed that hard coral cover was most strongly related to water clarity, that macroalgal cover was highest in areas with high wave action and high water clarity, and that crustose coralline algae were negatively related to sedimentation. Octocoral communities (42 species in 23 genera) were dominated by zooxanthellae-free taxa; those few species with zooxanthellae were restricted to reefs with low wave action and high water clarity in the north-eastern region. The water quality gradient spans from conditions that are marginal for zooxanthellate octocorals while still supporting diverse scleractinian communities, towards an estuarine endpoint where zooxanthellate octocorals cease to exist and hard coral communities are reduced to a few resilient colonies. The data suggest that the types, abundances and richness of zooxanthellate octocorals, and the shift from zooxanthellate to azooxanthellate octocoral communities, may act as useful indicators of water clarity in regions where long-term water quality data are unavailable.     

Impacts of human activities on coral reef ecosystems of southern Taiwan: a long-term study

In July 2001, the National Museum of Marine Biology and Aquarium, co-sponsored by the Kenting National Park Headquarters and Taiwan's National Science Council, launched a Long-Term Ecological Research (LTER) program to monitor anthropogenic impacts on the ecosystems of southern Taiwan, specifically the coral reefs of Kenting National Park (KNP), which are facing an increasing amount of anthropogenic pressure. We found that the seawater of the reef flats along Nanwan Bay, Taiwan's southernmost embayment, was polluted by sewage discharge at certain monitoring stations. Furthermore, the consequently higher nutrient and suspended sediment levels had led to algal blooms and sediment smothering of shallow water corals at some sampling sites. Finally, our results show that, in addition to this influx of anthropogenically-derived sewage, increasing tourist numbers are correlated with decreasing shallow water coral cover, highlighting the urgency of a more proactive management plan for KNP's coral reefs.     

Quantity, composition, and source of sediment collected in sediment traps along the fringing coral reef off Molokai, Hawaii

Sediment traps were used to evaluate the frequency, cause, and relative intensity of sediment mobility/resuspension along the fringing coral reef off southern Molokai (February 2000-May 2002). Two storms with high rainfall, floods, and exceptionally high waves resulted in sediment collection rates>1000 times higher than during non-storm periods, primarily because of sediment resuspension by waves. Based on quantity and composition of trapped sediment, floods recharged the reef flat with land-derived sediment, but had a low potential for burying coral on the fore reef when accompanied by high waves. The trapped sediments have low concentrations of anthropogenic metals. The magnetic properties of trapped sediment may provide information about the sources of land-derived sediment reaching the fore reef. The high trapping rate and low sediment cover indicate that coral surfaces on the fore reef are exposed to transient resuspended sediment, and that the traps do not measure net sediment accumulation on the reef surface.     

A relic coral fauna threatened by global changes and human activities, Eastern Brazil

Coral species composition of drilled cores from emergent bank reefs, and coral cover of the surface of old and living reefs located along the coast of the state of Bahia, Eastern Brazil, revealed that there is a marked change in the occurrence of the major building coral species in different time intervals of the reef structure, as well as in the living surface of reefs located in two different geographical sites. Holocene core sections from two reef areas (12 degrees 40'S-38 degrees 00'W and 18 degrees 00'S-39 degrees 00'W) have as major reef builders, on its topmost core interval (3 to 4 ky old), the endemic coral Mussismilia braziliensis Verrill, 1868, which also dominate on the 2.5-3.5 ky old surfaces of truncated reef tops. At the base of the cores (the 2m lower interval, older than 4 ky BP), another endemic coral Mussismilia harttii Verrill, 1868 is the dominant reef component. The relative abundance of M. braziliensis on the living surfaces of shallow reefs from both areas, shows that in the southern area, it is up to 98% on reefs located 60 km off the coast, in depths between 3 and 4m, but do not exceed 1.3% on the surface of the northern reefs located 1-2 km off the coast in depths 4-5m. The Holocene falling sea level that occurred along the coast of Brazil since 5.1 ky BP, causes an increasing runoff into the area of coastal reefs. This phenomenon may have affected the nearshore reef building fauna, replacing a more susceptive coral fauna with one better adapted to low light levels and higher sediment influx. The high turbidity associated with early Holocene shelf flooding, should also be responsible for the absence of M. braziliensis during the initial stages of reef buildup in Brazil. At the present time, the rapidly increasing human pressure, due to changes in land uses of the coastal zone (increasing sedimentation rate, nutrification of coastal waters, industrial pollution) and underwater practices, such as overfishing and an intense tourism, is aggravating the recovery capacity of this already naturally threatened coral community. If this situation coupled with increasing sea surface temperature persists, modern coral reef growth, in Brazil cannot be maintained and the major reef building coral species of the reefs in Bahia, a remnant endemic coral fauna will very soon appear in the list of endangered species.     

Organic carbon deliveries and their flow related dynamics in the Fitzroy estuary

The Fitzroy estuary (Queensland, Australia) receives large, but highly episodic, river flows from a catchment (144,000 km(2)) which has undergone major land clearing. Large quantities of suspended sediments, and particulate and dissolved organic carbon are delivered. At peak flows, delta(13)C (-21.7+/-0.8 per thousand) and C/N (14.8+/-1.3) of the suspended solids indicate that the particulate organic material entering the estuary is principally soil organic carbon. At the lower beginning flows the particulate organic matter comes from in-stream producers (delta(13)C=-26 per thousand). The DOC load is about 10 times the POC load. Using the inverse method, budgets for POC and DOC were constructed for high and low flows. Under high flows, only a small portion of the POC and DOC load is lost in the estuary. Under dry season (low flow) conditions the estuary is a sink for DOC, but remains a source of POC to the coastal waters.     

Forecasting models to quantify three anthropogenic stresses on coral reefs from marine recreation: anchor damage, diver contact and copper emission from antifouling paint

This research focuses on damage to coral reefs from three anthropogenic stresses: the dropping of anchors and their chains, human contact, and emission of copper from antifouling paints. Forecasting models are described that quantify degradation in terms of percentage of coral cover damaged/year or increasing levels of water toxicity/year. The models utilize a Monte Carlo simulation that applies a range of values or a probability distribution to each of the numerous uncertain variables. This model has the flexibility to adapt, and become more accurate, when users input assumptions specific to their diving sites. Given our specific assumptions for a frequently visited site, anchors and their chains forecast a distribution of coral reef cover damage with a mean of 7.11%+/-4.77%, diver contact forecast a distribution of coral reef cover damage with a mean of 0.67%+/-0.38%, and antifouling paint forecast a distribution of copper level increase in the water with a mean of 0.037+/-0.014ppb. The results support recommendations for the implementation and sustained use of several specific marine recreation practices.     

Informing policy to protect coastal coral reefs: Insight from a global review of reducing agricultural pollution to coastal ecosystems

The continuing degradation of coral reefs has serious consequences for the provision of ecosystem goods and services to local and regional communities. While climate change is considered the most serious risk to coral reefs, agricultural pollution threatens approximately 25% of the total global reef area with further increases in sediment and nutrient fluxes projected over the next 50 years. Here, we aim to inform coral reef management using insights learned from management examples that were successful in reducing agricultural pollution to coastal ecosystems. We identify multiple examples reporting reduced fluxes of sediment and nutrients at end-of-river, and associated declines in nutrient concentrations and algal biomass in receiving coastal waters. Based on the insights obtained, we recommend that future protection of coral reef ecosystems demands policy focused on desired ecosystem outcomes, targeted regulatory approaches, up-scaling of watershed management, and long-term maintenance of scientifically robust monitoring programs linked with adaptive management.     

The impact of the 1998 coral mortality on reef fish communities in the Seychelles

Coral reef fish communities in the Seychelles are highly diverse and remain less affected by the direct impacts of human activities than those on many other coral reefs in the Indian Ocean. These factors make them highly suitable for a detailed survey of the impacts of the 1998 mass coral mortality, which devastated the coral faunas of the region. Using underwater visual census (UVC) techniques. fish communities were sampled in three localities in the southern Seychelles and one locality in the northern (granitic) Seychelles. Initial surveys were undertaken from the latter site in 1997. Surveys were undertaken at all sites during the coral bleaching episode in 1998 prior to any major changes in the reef fish communities. Repeat surveys were undertaken in 1999 one year after the coral mortality. Over 250 fish species were sampled from 35 families. Results suggest that changes in the overall fish community structures are not great, despite massive changes in the benthic cover. Significant changes have been observed in a number of individual species. These include those most heavily dependent on live coral cover for shelter or sustenance. Future potential changes are discussed, and potential management interventions are considered.     

Mapping water quality and substrate cover in optically complex coastal and reef waters: an integrated approach

Sustainable management of coastal and coral reef environments requires regular collection of accurate information on recognized ecosystem health indicators. Satellite image data and derived maps of water column and substrate biophysical properties provide an opportunity to develop baseline mapping and monitoring programs for coastal and coral reef ecosystem health indicators. A significant challenge for satellite image data in coastal and coral reef water bodies is the mixture of both clear and turbid waters. A new approach is presented in this paper to enable production of water quality and substrate cover type maps, linked to a field based coastal ecosystem health indicator monitoring program, for use in turbid to clear coastal and coral reef waters. An optimized optical domain method was applied to map selected water quality (Secchi depth, Kd PAR, tripton, CDOM) and substrate cover type (seagrass, algae, sand) parameters. The approach is demonstrated using commercially available Landsat 7 Enhanced Thematic Mapper image data over a coastal embayment exhibiting the range of substrate cover types and water quality conditions commonly found in sub-tropical and tropical coastal environments. Spatially extensive and quantitative maps of selected water quality and substrate cover parameters were produced for the study site. These map products were refined by interactions with management agencies to suit the information requirements of their monitoring and management programs.     

River discharge reduces reef coral diversity in Palau

Coral community structure is often governed by a suite of processes that are becoming increasingly influenced by land-use changes and related terrestrial discharges. We studied sites along a watershed gradient to examine both the physical environment and the associated biological communities. Transplanted corals showed no differences in growth rates and mortality along the watershed gradient. However, coral cover, coral richness, and coral colony density increased with increasing distance from the mouth of the bay. There was a negative relationship between coral cover and mean suspended solids concentration. Negative relationships were also found between terrigenous sedimentation rates and the richness of adult and juvenile corals. These results have major implications not only for Pacific islands but for all countries with reef systems downstream of rivers. Land development very often leads to increases in river runoff and suspended solids concentrations that reduce coral cover and coral diversity on adjacent reefs.     

Assessing coral reef health across onshore to offshore stress gradients in the US Virgin Islands

Managing the effects of anthropogenic disturbance on coral reefs is highly dependant on effective strategies to assess degradation and recovery. We used five years of field data in the US Virgin Islands to investigate coral reef response to a potential gradient of stress. We found that the prevalence of old partial mortality, bleaching, and all forms of coral health impairment (a novel category) increased with nearshore anthropogenic processes, such as a five-fold higher rate of clay and silt sedimentation. Other patterns of coral health, such as recent partial mortality, other diseases, and benthic cover, did not respond to this potential gradient of stress or their response could not be resolved at the frequency or scale of monitoring. We suggest that persistent signs of disturbance are more useful to short-term, non-intensive (annual) coral reef assessments, but more intensive (semi-annual) assessments are necessary to resolve patterns of transient signs of coral health impairment.     

Proximate environmental drivers of coral communities at Palmyra Atoll: establishing baselines prior to removing a WWII military causeway

A management proposal aims to partly remove a WWII military causeway at Palmyra Atoll to improve lagoon water circulation and alleviate sedimentation stress on the southeast backreef, an area of high coral cover and diversity. This action could result in a shift in sedimentation across reef sites. To provide management advice, we quantified the proximate environmental factors driving scleractinian coral cover and community patterns at Palmyra. The proportion of fine sedimentation was the optimal predictor of coral cover and changes in community structure, explaining 23.7% and 24.7% of the variation between sites, respectively. Scleractinian coral cover was negatively correlated with increases in fine sedimentation. Removing the causeway could negatively affect the Montipora corals that dominate the western reef terrace, as this genus was negatively correlated with levels of fine sedimentation. The tolerance limits of corals, and sediment re-distribution patterns, should be determined prior to complete removal of the causeway.     

ENCORE: the effect of nutrient enrichment on coral reefs. Synthesis of results and conclusions

Coral reef degradation resulting from nutrient enrichment of coastal waters is of increasing global concern. Although effects of nutrients on coral reef organisms have been demonstrated in the laboratory, there is little direct evidence of nutrient effects on coral reef biota in situ. The ENCORE experiment investigated responses of coral reef organisms and processes to controlled additions of dissolved inorganic nitrogen (N) and/or phosphorus (P) on an offshore reef (One Tree Island) at the southern end of the Great Barrier Reef, Australia. A multi-disciplinary team assessed a variety of factors focusing on nutrient dynamics and biotic responses. A controlled and replicated experiment was conducted over two years using twelve small patch reefs ponded at low tide by a coral rim. Treatments included three control reefs (no nutrient addition) and three + N reefs (NH4Cl added), three + P reefs (KH2PO4 added), and three + N + P reefs. Nutrients were added as pulses at each low tide (ca twice per day) by remotely operated units. There were two phases of nutrient additions. During the initial, low-loading phase of the experiment nutrient pulses (mean dose = 11.5 microM NH4+; 2.3 microM PO4(-3)) rapidly declined, reaching near-background levels (mean = 0.9 microM NH4+; 0.5 microM PO4(-3)) within 2-3 h. A variety of biotic processes, assessed over a year during this initial nutrient loading phase, were not significantly affected, with the exception of coral reproduction, which was affected in all nutrient treatments. In Acropora longicyathus and A. aspera, fewer successfully developed embryos were formed, and in A. longicyathus fertilization rates and lipid levels decreased. In the second, high-loading, phase of ENCORE an increased nutrient dosage (mean dose = 36.2 microM NH4+; 5.1 microM PO4(-3)) declining to means of 11.3 microM NH4+ and 2.4 microM PO4(-3) at the end of low tide) was used for a further year, and a variety of significant biotic responses occurred. Encrusting algae incorporated virtually none of the added nutrients. Organisms containing endosymbiotic zooxanthellae (corals and giant clams) assimilated dissolved nutrients rapidly and were responsive to added nutrients. Coral mortality, not detected during the initial low-loading phase, became evident with increased nutrient dosage, particularly in Pocillopora damicornis. Nitrogen additions stunted coral growth, and phosphorus additions had a variable effect. Coral calcification rate and linear extension increased in the presence of added phosphorus but skeletal density was reduced, making corals more susceptible to breakage. Settlement of all coral larvae was reduced in nitrogen treatments, yet settlement of larvae from brooded species was enhanced in phosphorus treatments. Recruitment of stomatopods, benthic crustaceans living in coral rubble, was reduced in nitrogen and nitrogen plus phosphorus treatments. Grazing rates and reproductive effort of various fish species were not affected by the nutrient treatments. Microbial nitrogen transformations in sediments were responsive to nutrient loading with nitrogen fixation significantly increased in phosphorus treatments and denitrification increased in all treatments to which nitrogen had been added. Rates of bioerosion and grazing showed no significant effects of added nutrients. ENCORE has shown that reef organisms and processes investigated in situ were impacted by elevated nutrients. Impacts were dependent on dose level, whether nitrogen and/or phosphorus were elevated and were often species-specific. The impacts were generally sub-lethal and subtle and the treated reefs at the end of the experiment were visually similar to control reefs. Rapid nutrient uptake indicates that nutrient concentrations alone are not adequate to assess nutrient condition of reefs. Sensitive and quantifiable biological indicators need to be developed for coral reef ecosystems. The potential bioindicators identified in ENCORE should be tested in future research on coral reef/nutrient interactions. Synergistic and cumulative effects of elevated nutrients and other environmental parameters, comparative studies of intact vs. disturbed reefs, offshore vs. inshore reefs, or the ability of a nutrient-stressed reef to respond to natural disturbances require elucidation. An expanded understanding of coral reef responses to anthropogenic impacts is necessary, particularly regarding the subtle, sub-lethal effects detected in the ENCORE studies.     

Algal δ15N values detect a wastewater effluent plume in nearshore and offshore surface waters and three-dimensionally model the plume across a coral reef on Maui, Hawai'i, USA

The coral reef at Kahekili, Maui is located ~300 m south of the Lahaina Wastewater Reclamation Facility which uses four Class V injection wells to dispose of 3-5 million gallons of wastewater effluent daily. Prior research documented that the wastewater effluent percolates into the nearshore region of Kahekili. To determine if the wastewater effluent was detectable in the surface waters offshore, we used algal bioassays from the nearshore region to 100 m offshore and throughout the water column from the surface to the benthos. These algal bioassays documented that significantly more wastewater effluent was detected in the surface rather than the benthic waters and allowed us to generate a three-dimensional model of the wastewater plume in the Kahekili coastal region. Samples located over freshwater seeps had the highest δ(15)N values (~30-35‰) and the effluent was detected in surface samples 500 m south and 100 m offshore of the freshwater seeps (~8-11‰).     

Coral death from sewage and phosphate pollution at Aqaba,Red Sea

Localized pollution of coral reef areas is occurring at Aqaba, Red Sea, as a result of sewage discharge, and as a result of spillage of phosphate dust during loading of phosphate mineral onto ships. The rate of death of colonies of the coral Stylophora pistillata was found to be 4–5 times as great in the polluted area as in a control area. Coral damage in the control area is generally caused by grazing or by extreme low tide, but the cause of coral death in the polluted area was not readily apparent. The growth of algae, both on the damaged corals, and on glass slides placed out in the reef, was greatly stimulated in the polluted area, but it appeared that such algal growth was not the direct cause of coral death. Corals in the polluted area may be under stress because of reduced light intensity, inhibition of calcification by excess phosphate, and increased sediment load. It was found that in the polluted area there was a greater weight of sediment settling on the glass slides for a given weight of algae. But in addition, since algal growth was faster in the polluted area, the sediment load was increased by the sediment trapping capacity of the enhanced algal growth. Thus it is suggested that increased algal growth stimulated by increased nutrient concentrations may be important in greatly increasing the sediment load experienced by corals.