Biogeographical distribution and diversity of bacterial and archaeal communities within highly polluted anoxic marine sediments from the marmara sea

Physicochemical and microbiological characterization of anoxic sediments taken from seven highly polluted sites of the Marmara Sea was carried out. The 16S rRNA based microbial community structure analyses were performed using domain-specific PCR followed by denaturant gradient gel electrophoresis (DGGE) and sequencing of characteristic bands. The results showed that the microbial communities in these sediments were diverse and evenly distributed. Relating the prokaryotic and geochemical variables through statistical tools revealed that the microbial diversity in the sediments significantly related to depth, and S, Mn and Fe content of the sediments. Fermentative bacteria, denitrifying bacteria and hydrogenotrophic methanogens were dominant whereas sulfate reducing bacteria were absent in the DGGE patterns. This unusual microbial community structure implied that the newly discovered anaerobic methane oxidation coupled to denitrification process may occur in these subseafloor environments.     

Metal (Al, Fe, Mn and Cu) distributions and origins of polycyclic aromatic hydrocarbons (PAHs) in the surface sediments of the Marmara Sea and the coast of Istanbul, Turkey

In this study, total metal (Al, Fe, Mn and Cu) and PAHs analyses have been done in the surface sediments. Sediment samples have been collected from seven parts of the Marmara Sea and the coast of Istanbul during 2009. Total Al, Fe, Mn and Cu contents vary between 1.8% and 5.4%; 1.1% and 2.8%; 122 and 259 μg g⁻¹; 27 and 416 μg g⁻¹, respectively. EF and CF values of Fe and Mn are lower than 1.5 and 1, respectively, in all the stations. Total PAH contents range between 135 and 6009 ng g⁻¹ in the surface sediments. The origin of PAHs has been found pyrolitic according to the Phe/Ant ratio in the all stations. Contrastingly, at K0, MKC and MY1 Stations, PAH origins have been observed petrogenic according to the Flu/Pyr ratio.     

Temporal changes in Sphingomonas and Mycobacterium populations in mangrove sediments contaminated with different concentrations of polycyclic aromatic hydrocarbons (PAHs)

The change in community diversity and structure of the indigenous, dominant, polycyclic aromatic hydrocarbon (PAH)-degrading bacterial genera, Sphingomonas and Mycobacterium, due to contamination in the environment is not very well known. A combination of PCR-DGGE with specific primers and a cultivation-dependent microbiological method was used to detect different populations of Sphingomonas and Mycobacterium in mangrove sediments. The structure of the entire bacterial community (including Sphingomonas) did not show a shift due to environmental contamination, whereas the diversity of Mycobacterium populations in mangrove sediments with higher PAH contamination increased from exposure between Day 0 and Day 30. The isolated Mycobacterium strains migrated to the same position as the major bands of the bacterial communities in Mycobacterium-specific DGGE. A dioxygenase gene system, nidA, which is commonly found in PAH-degrading Mycobacterium strains, was also detected in the more highly contaminated sediment slurries. The present study revealed that Mycobacterium species were the dominant PAH-degraders and played an important role in degrading PAHs in contaminated mangrove sediments.     

Spatial and temporal changes of TBT pollution along the Portuguese coast: inefficacy of the EEC directive 89/677

Nucella lapillus imposex (superimposition of male characters onto prosobranch females) and organotin body burden were surveyed in the Portuguese coast in 1997 and 2000. Time comparisons of the available data on Nucella lapillus imposex in the Portuguese coast indicate a global increase of TBT pollution in recent years, revealing the inefficacy of the 1993 legislation that bans the use of TBT paints on small boats (<25 m). The absence or scarcity of the species inside harbours, which are the most polluted sites in Portugal, is probably a consequence of extinction due to female sterilisation by TBT.     

江西柘林湖水华蓝藻——长孢藻(Dolichospermum)的形态多样性及其分子特征

长孢藻是具有产多种蓝藻毒素及异味物质潜在能力的丝状异形胞蓝藻.为了探究长孢藻的生物学特性,我们从江西柘林湖分离24株长孢藻,经形态鉴定分成4个种类,分别为浮游长孢藻(Dolichospermum planctonicum)、近亲长孢藻(D. affine)、卷曲长孢藻(D. circinale)、螺旋长孢藻(D. spiroides). 16S rRNA基因序列表明柘林湖长孢藻与日本等地区的长孢藻高度相似,但只有近亲长孢藻与日本近亲长孢藻在分子系统进化树上聚为一支.基于16S-23S rRNA之间高变异性的ITS序列分析,4种长孢藻的D1-D1'螺旋结构相同,藻丝为直型的浮游长孢藻、近亲长孢藻与藻丝为弯型的卷曲长孢藻、螺旋长孢藻的Box-B、V3螺旋结构差异较大.通过对毒素和异味的分子生物学检测显示24株长孢藻均不产毒,但是4株浮游长孢藻及1株卷曲长孢藻含有土腥素合成基因.本研究不仅对柘林湖水华蓝藻的多样性以及潜在生态风险提供科学的基础资料,也在流域层面上为鄱阳湖的水生态系统研究和保护提供了一定的科学基础.     

Long-term changes in the type,but not amount,of ingested plastic particles in short-tailed shearwaters in the southeastern Bering Sea

We report the current (1997-1999, 2001) incidence and amount of ingested plastic in short-tailed shearwaters (Puffinus tenuirostris) in the southeastern Bering Sea and compare our results with plastic reported in shearwaters during 1970-1978. We also examine correlations between plastic loads and shearwater body mass. We found that 84% (N = 330) of shearwaters sampled in 1997-1999 and 2001 contained plastic. The incidence and amount of ingested plastic have not significantly changed since the 1970s. In contrast, the predominant type of plastic has changed over time, from industrial plastic to user plastic. S,asonal patterns in the incidence and amount of ingested plastic also changed from peak levels during early and late summer in the 1970s to mid summer in the late 1990s and 2001. We suggest that the availability of neuston plastic to seabirds in the Bering Sea has undergone a shift in composition since the 1970s. Shearwater body mass appears little if at all impaired by plastic, at least at present levels of consumption.     

Inter- and intra-annual patterns of Ulva prolifera green tides in the Yellow Sea during 2007-2009, their origin and relationship to the expansion of coastal seaweed aquaculture in China

The large green-tide events that occurred in the Yellow Sea in 2008 (3489 km²) and 2009 (4994 km²) are shown to be novel events preceded only once by a much smaller event in 2007 (82 km²). The blooms originated in the coastal area of Jiangsu province and spread north-east towards the Shandong Peninsula. The blooms grew at different rates and mesoscale variability in surface winds explained the differences in the spatial and temporal patterns of blooms in 2008 and 2009. The 2009 bloom was tracked to its origin immediately offshore of extensive intertidal flats between Yancheng and Nantong where recent rapid expansion of Porphyra aquaculture has occurred. We review published hypotheses which have been advanced to explain the occurrence of blooms and in light of our findings, we conclude that the accumulation and disposal of waste Ulva prolifera from Porphyra aquaculture rafts is the most likely cause of the blooms.     

Abundance distribution and seasonal variations of Calanus sinicus (Copepoda: Calanoida) in the northwest continental shelf of South China Sea

The effect of monsoon, coastal current and temperature on the distribution and seasonal variations of Calanus sinicus abundance were studied. The samples from the northwest continental shelf of South China Sea were collected with 505 μm planktonic nets from July 2006 to October 2007. The abundance of C. sinicus made up 34.28% and 12.34% of all copepods in spring and summer, respectively. The distribution of C. sinicus varied seasonally and regionally. The distribution of C. sinicus ranged between east inshore and offshore waters from the Leizhou Peninsula to Hainan Island, with a mean of 23.00 (±77.78) ind. m⁻³ in spring. In summer it had a mean of 13.74 (±45.10) ind. m⁻³ occurring only in the east inshore waters from Leizhou Peninsula to Hainan Island. C. sinicus was not abundant during autumn and winter seasons. The surveyed area was divided into three sub-regions based on topographical analysis and water mass, region I (included the east inshore waters of Leizhou Peninsula), region II (included the east inshore waters of Hainan Island) and region III (included the offshore waters from Leizhou Peninsula to Hainan Island). The average abundance of C. sinicus within region I was determined to be 115.63 (±145.93) and 68.12 (±84.00) ind. m⁻³ in spring and summer, respectively, values higher than those of regions II and III. Our findings suggested that C. sinicus was transported from the East China Sea to the northwest continental shelf of South China Sea by the Guangdong Coastal Current, which was driven by the northeast monsoon in spring. The presence of a cold eddy, in addition to coastal upwelling driven by the southwest monsoon, provided suitable survival conditions for C. sinicus in summer. This species disappeared in autumn due to high temperatures (>27 °C) and did not begin to enter into the northwest continental shelf of South China Sea from the East China Sea during the period of investigation in winter. The frequency of C. sinicus was low in region III during the year as a result of the South China Sea Warm Current and pelagic waters with high temperature during the spring and summer months.     

Detection and temporal variation of Co in the digestive glands of the common octopus, Octopus vulgaris, in the East China Sea

⁶⁰Co were detected in common octopus specimens collected in the East China Sea in 1996-2005. The source of ⁶⁰Co has remained unclear yet. Stable isotope analyses showed that there was no difference in stable Co concentrations between octopus samples with ⁶⁰Co and without ⁶⁰Co. This result showed that the stable Co in the digestive gland of octopus potentially did not include a trace amount of ⁶⁰Co and the source of ⁶⁰Co existed independently. Furthermore, investigations of octopus in other area and other species indicated that the origin of the source of ⁶⁰Co occurred locally in the restricted area in the East China Sea and not in the coastal area of Japan. Concentrations of ⁶⁰Co have annually decreased with shorter half-life than the physical half-life. This decrease tendency suggests that the sources of ⁶⁰Co were identical and were temporary dumped into the East China Sea as a solid waste.