Seacage aquaculture in a World Heritage Area: The environmental footprint of a Barramundi farm in tropical Australia

The fate of aquaculture wastes from a seacage farm within a pristine mangrove environment was studied. Seasonal and tidal differences were most important in determining water quality within receiving waters and obscured any nutrient enrichment effect by the farm. Farm wastes added significantly to the N budget status of the creek system, but overall water quality conformed to Queensland EPA Water Quality standards. Mangrove trees throughout the creek system contained ¹⁵N signatures traceable to aquaculture feeds, but the footprint of the farm itself was best indicated by the ratio of Zn:Li in sediments. The creek became hypoxic (<2 mg l⁻¹) during wet season low tides. Consequently, we recommended monitoring of water-column oxygen concentrations to warn of hypoxic conditions threatening to fish health, as well as Zn:Li ratios in sediment accumulation zones to determine the area of influence of the farm.     

Water Quality in the Great Barrier Reef World Heritage Area: Past Perspectives, Current Issues and New Research Directions

Elevated sediment and nutrient concentrations have long been regarded as the pre-eminent water quality threats to the Great Barrier Reef, with the potential risk posed by other pollutants such as heavy metals, persistent chlorohydrocarbons, PCBs and petroleum related compounds considered to be of lesser consequence. However, the management focus on these latter types of pollutants has recently shifted to acknowledge the potential impact posed by diuron, dioxins, dieldrin, and mercury and cadmium concentrations detected in sediments and biota along the Great Barrier Reef and southern Queensland coastline. In general, these threats originate from areas dominated by intensive cropping agriculture and are exacerbated by high rainfall and erosion rates in the wet tropics region of the Queensland coast. Maintenance of long-term monitoring programmes, which utilize innovative data acquisition techniques will enable assessment of change in environmentally relevant pollutant concentrations over time. However, improved land management practices, which include an immediate minimization of vegetation clearance and responsible use of pesticides and fertilizers in Queensland are essential if water quality in the Great Barrier Reef World Heritage Area is to be maintained and protected.     

Water quality in the Great Barrier Reef region: responses of mangrove, seagrass and macroalgal communities

Marine plants colonise several interconnected ecosystems in the Great Barrier Reef region including tidal wetlands, seagrass meadows and coral reefs. Water quality in some coastal areas is declining from human activities. Losses of mangrove and other tidal wetland communities are mostly the result of reclamation for coastal development of estuaries, e.g. for residential use, port infrastructure or marina development, and result in river bank destabilisation, deterioration of water clarity and loss of key coastal marine habitat. Coastal seagrass meadows are characterized by small ephemeral species. They are disturbed by increased turbidity after extreme flood events, but generally recover. There is no evidence of an overall seagrass decline or expansion. High nutrient and substrate availability and low grazing pressure on nearshore reefs have lead to changed benthic communities with high macroalgal abundance. Conservation and management of GBR macrophytes and their ecosystems is hampered by scarce ecological knowledge across macrophyte community types.     

Changes in the marine environment of Port Kembla Harbour, NSW, Australia, 1975-1995: a review

Data on water quality, sediment quality and aquatic organisms in Port Kembla Harbour from the 1970s to the 1990s are reviewed. In the 1970s, the marine environment of Port Kembla Harbour was in poor condition as a result of pollution from heavy industries. Elevated concentrations of pollutants were found in water, sediment and fish in the harbour; aquatic biodiversity was limited and many fish kills were reported. With the implementation of pollution reduction programs (required by legislation changes) by the industries surrounding the harbour since the 1970s, pollution in the harbour has been reduced dramatically, and the quality of the marine environment of the harbour has noticeably improved. Large reductions in the concentrations of certain toxic wastes and heavy metals in water have occurred. Marine life has returned to the whole harbour (parts were described in 1977 as abiotic). Contaminants in fish have decreased. Despite this achievement, however, there is still considerable room for improvement in the quality of the marine environment of the harbour.     

Toxicity of a secondary-treated sewage effluent to marine biota in Bass Strait, Australia: development of action trigger values for a toxicity monitoring program

Melbourne Water's Eastern Treatment Plant (ETP) produces a secondary-treated sewage effluent which is chlorinated and discharged into Bass Strait at Boags Rocks, Victoria, Australia. Disappearance of the sensitive brown seaweed Hormosira banksii from rock platforms immediately adjacent to the shore-line discharge was identified in the early 1990s. Subsequently, Melbourne Water and CSIRO undertook an environmental impact assessment and review of land and marine effluent disposal options, which included ambient water quality monitoring, biological monitoring, bioaccumulation studies and toxicity testing of existing effluent to assess the nature and magnitude of the environmental effects. This paper presents data from the toxicity monitoring programs since 2001. Chronic toxicity testing using macroalgal germination and cell division (H. banksii), microalgal growth rate (Nitzschia closterium) and scallop larval development (Chlamys asperrima), confirmed that ammonia was the major cause of effluent toxicity. Results from this toxicity monitoring program were used to develop action trigger values for toxicity for each species, which were then used in a refined monitoring program in 2005-2007. An upgrade of the ETP is in progress to improve nitrification/denitrification in order to reduce ammonia concentrations and the toxicity of the effluent. Toxicity testing with a simulated upgraded effluent confirmed that ammonia concentrations and toxicity were reduced. Estimated "safe" dilutions of effluent, calculated using species sensitivity distributions, decreased from 1:140-300 for existing ETP effluent to 1:20 for nitrified effluent, further confirming that treatment improvements should reduce the impact on marine biota in the vicinity of the discharge.     

Monitoring the sea change: preliminary assessment of the conservation value of nearshore reefs, and existing impacts, in a high-growth, coastal region of subtropical eastern Australia

In northern NSW, Australia, coastal populations are forecast to increase dramatically over the next 25 years (the "sea change"). However, management of the effects of development on marine communities is hampered by the lack of data on key habitats. Consequently, we developed a protocol to assess the biodiversity and current human impacts on nearshore reefs, habitats that will be readily affected by coastal development. We assessed four reefs adjacent to each of three population centres targeting fish, mollusc and sessile benthic communities, and debris loads. Community structure was highly variable over all spatial scales indicating that reefs should not be considered equivalent within the planning framework. While, debris loads were relatively low on most reefs, those with highest conservation value also had the highest debris loads suggesting potential conflict between human use and long-term sustainability of reefal communities. Without intervention, this situation will be exacerbated in the future.     

Urban environments as habitats for rare aquatic species: The case of leeches (Euhirudinea, Clitellata) in Warsaw freshwaters

Reduced biological diversity in freshwater habitats situated in urban areas has been discussed in numerous studies. Certain municipal areas, however, can help save animal diversity of freshwater invertebrates. In the present study animals were collected or observed alive in 13 freshwater environments localized in Warsaw - the second largest city of Central Europe - in a densely populated, urban building complex close to the city, and also in suburban areas. Leech assemblages in all the environments under observation were numerically dominated by a few common species, but on the whole 19 species were collected or observed. The populations of six rare leech species inhabit both flowing and standing waters in Warsaw. Five of these species are on the Polish Red List of Species and one is strictly protected. The shallow Lake Powsinkowskie is the richest freshwater environment in the studied area in terms of species richness and rarity and also one of the richest lakes in Poland. Taxonomic diversity in the environments under study seems not to be directly related to the size of the water body or the level of degradation but rather to the habitat complexity, especially the diversity of the bottom in littoral zone. Certain freshwater habitats located inside this great urban complex still create good conditions for rare, highly specialized species.     

Coastal resource degradation in the tropics: does the tragedy of the commons apply for coral reefs, mangrove forests and seagrass beds

The keynote paper by Garrett Hardin 44 years ago introduced the term 'tragedy of the commons' into our language (Hardin, 1968); this term is now used widely, but it is neither universally accepted nor fully understood. Irrespective, the 'tragedy of the commons' is an increasing reality for more than 500 million people that rely on the biodiversity resources and services of tropical coral reefs, mangrove forests, seagrass beds and associated fisheries. These natural resources continue to decline despite major advances in our scientific understanding of how ecosystems and human populations interact, and the application of considerable conservation and management efforts at scales from local user communities to oceans. Greater effort will be required to avert increasing damage from over-exploitation, pollution and global climate change; all deriving from increasing exploitation driven by poverty and progress i.e. continuing to expand development indefinitely and extraction of resources at industrial scales. However, the 'tragedy' concept has been widely criticized as a simple metaphor for a much larger set of problems and solutions. We argue that the 'tragedy' is essentially real and will continue to threaten the lives of millions of people unless there are some major moral and policy shifts to reverse increasing damage to coastal habitats and resources. We agree with the conclusion by Hardin that the solution to the tragedy will not be through the application of natural sciences, but via implementing exceedingly difficult and controversial moral decisions. An extreme example of a moral and controversial direction suggested by Hardin was in re-examining the 'freedom to breed' as an inherent human value. The need for 'moral decisions' is even greater in 2012.     

The glutathione antioxidant system as a biomarker suite for the assessment of heavy metal exposure and effect in the grey mangrove, Avicennia marina (Forsk.) Vierh

Alterations in the glutathione antioxidant system and lipid peroxidation in Avicennia marina were studied under laboratory and field conditions. The activity of glutathione peroxidase (GPx) was found to respond to Zn exposure, and a significant positive relationship between leaf Zn concentration and GPx activity was observed after 96 h and 8 weeks. Lipid hydroperoxides increased proportionally with increasing leaf Zn concentration after 2 and 8 weeks, while no changes in total glutathione were observed. Induction of GPx at 96 h predicted effects at the individual level at a later time interval (reduced biomass at 8 weeks). Results from the field revealed that increasing leaf metal concentration (Zn, Cu or Pb) produced a proportional increase in GPx activity whereas lipid hydroperoxides and total glutathione were not affected. The utility of GPx as an early warning biomarker is suggested, since GPx activity increases in a dose-dependant fashion in response to accumulated leaf metals, and is predictive of later effects on growth.     

Flotation and remelting of plagioclase in the Kalka Intrusion,central Australia: Petrological implications for anorthosite genesis

Flotation of early-formed plagioclase in the layered gabbroic Kalka Intrusion of central Australia was accompanied by gravitational settling of co-crystallizing pyroxenes. Remelting of the rising plagioclase upset the normal gravitational crystal-extractive processes which control classic basaltic fractionation trends. Together with high pressures of crystallization which cause orthopyroxene rather than olivine to be the first phase to precipitate, this may help to explain the eventual production of at least 800 m of plagioclase cumulates (anorthosites) as late-stage products of fractionation in Kalka. Addition or removal of melts at various stages of fractionation are further processes affecting the differentiation trends of layered intrusions. Variations in the occurrence of such processes may explain many of the differences between anorthosite suites throughout the world.     

Geochronology,geochemistry and Hf isotopes of andesites in the Sandaowanzi gold deposit(Great Xing'an Range,NE China): implications for petrogenesis,tectonic setting,and mineralization

The Sandaowanzi gold deposit is an extremely Au-rich deposit in the Northern Great Hinggan Range in recent years.Zircon U-Pb geochronology,Hf isotope analysis,and the geochemistry of andesites of the Longjiang Formation from the Sandaowanzi gold deposit were used to investigate the origin,magmatic evolution as well as mineralization and tectonic setting of the Early Cretaceous epithermal gold deposits in the northern Great Hinggan Range area.Zircon U-Pb dating reveals an emplacement age of 123.4±0.3 Ma,indicating that the andesites of the Sandaowanzi gold deposit was formed during the Early Cretaceous.The andesites are enriched in light rare earth elements relative to heavy rare earth elements and have weak negative Eu anomalies(δEu=0.76-0.90).The rocks are also enriched in large-ion lithophile elements,such as Rb,Ba,Th,U,and K,and depleted in the high-field-strength elements,such as Nb,Ta,and P.These characteristics are typical of volcanic rocks related to subduction.Igneous zircons from the andesite samples have relatively homogeneous Hf isotope ratios,~(176)Hf/~(177)Hf values of 0.282343-0.282502,εHf(t) values of-12.58 to-6.95,and two-stage model ages(T_(DM2)) of 1743-1431 Ma.The characteristics of the andesites of the Longjiang Formation are consistent with derivation from partial melting of enriched mantle wedge metasomatized by subducted-slab-derived fluids.These rocks formed in an extensional environment associated with the closure of the Mongol-Okhotsk Ocean and subduction of the Paleo-Pacific Plate.Mineralization occurred towards the end of volcanism,and the magmatic activity and mineralization are products of the same geodynamic setting.     

Spatial patterns of sub-tidal seagrasses and their tissue nutrients in the Torres Strait,northern Australia: Implications for management

The distribution and nutritional profiles of sub-tidal seagrasses from the Torres Strait were surveyed and mapped across an area of 31,000 km². Benthic sediment composition, water depth, seagrass species type and nutrients were sampled at 168 points selected in a stratified representative pattern. Eleven species of seagrass were present at 56 (33.3%) of the sample points. Halophila spinulosa, Halophila ovalis, Cymodocea serrulata and Syringodium isoetifolium were the most common species and these were nutrient profiled. Sub-tidal seagrass distribution (and associated seagrass nutrient concentrations) was generally confined to northern-central and south-western regions of the survey area (<longitude 142.60), where mean water depth was relatively shallow (approximately 13 m below MSL) and where sediments were comprised primarily muddy sand to gravelly sand. Seagrass nitrogen and starch content, the most important nutrients for marine herbivores, were significantly correlated with species and with the plant component (above or below ground). For all seagrass species, the above-ground component (shoots and leaves) possessed greater nitrogen concentrations than the below-ground component (roots and rhizomes), which possessed greater starch concentrations. S. isoetifolium had the highest total nitrogen concentrations (1.40±0.05% DW). However, it also had higher fibre concentrations (38.2±0.68% DW) relative to the other four species. H. ovalis possessed the highest starch concentrations (2.76±0.12% DW) and highest digestibility (83.24±0.66% DW) as well as the lowest fibre (27.2±0.66% DW). The high relative abundance (found at 55% of the sites that had seagrass) and nutrient quality characteristics of H. ovalis make it an important source of energy to marine herbivores that forage sub-tidally in the Torres Strait. There were two regions in Torres Strait (north-central and south-western) where sub-tidal seagrass meadows were prevalent and of relatively higher nutritional value. This spatial and nutritional information can be used by local agencies to manage and to protect the ecological, economic and cultural values of the sub-tidal seagrass ecosystems and associated fisheries of the Torres Strait.     

Molecular evidence for species separation in the water mite Hygrobates nigromaculatus Lebert, 1879 (Acari, Hydrachnidia): evolutionary consequences of the loss of larval parasitism

In the present study, we used mitochondrial cytochrome oxidase subunit I (COI) and nuclear D2 region of 28S rDNA sequence data to examine the taxonomic status of the water mite species Hygrobates nigromaculatus from two types of freshwater habitats: lentic (lakes) and lotic (streams). Previous hypotheses about (sub)species status of populations inhabiting lakes and streams based on differences in morphometric data and life-cycle strategy (parasitic vs. non-parasitic larvae) were strongly supported by molecular data. Levels of COI and D2 28S rDNA differentiation between lake and stream populations were much higher (ca. 18 and 7.5%, respectively) than those typically observed for populations of a single species. Both lake and stream populations showed similar high levels of gene diversity (Hd = 0.894 and 0.836, respectively). However, nucleotide within-population polymorphism was more than twice as high in lake populations as that in stream populations (π = 1.33 and 0.60%, respectively). We hypothesize that the ancestral lake-dwelling population originated from a stream form with parasitic larvae (here: H. setosus nov. stat.). For the observed populations, H. nigromaculatus individuals could be separated from H. setosus by distinct morphometric characters. The loss of phoretic parasitic larvae greatly decreased dispersal ability of lake-dwelling mites and consequently also the gene flow between lake populations. Thus, relatively more differentiated genetic structure in lake populations probably results from a stronger isolation between particular lake habitats, but this hypothesis needs further extensive studies.     

基于回声探测监测沉水植物盖度的插值方法研究:以杭州西湖沉水植物盖度监测为例

沉水植物作为水生态系统的重要组成成分,在水生态系统物质循环和能量流动中发挥着重要作用,其覆盖度和生物量是评价湖泊等浅水水体系统稳定性的关键参数随着高效和无损伤监测的回声探测仪在沉水植物盖度监测中的应用,其精确度算法也受到了越来越多的关注本研究以成功恢复沉水植物的浅水湖泊杭州西湖为研究对象,利用BioSonics便携型回声探测仪——MX采集沉水植物回声样本同时结合人工样方设置,采集与回声探测对应位点的沉水植物样本,验证回声探测结果的精确性通过建立回归模型分析回声探测得到的沉水植物体积百分比(PVI)与人工样方获得的对应平均鲜重关系,结果表明二者具有较好的相关性分别采用普通克里金法、反距离权重法、径向基函数法3种插值方法对同一季节的不同湖泊和同一湖泊的不同季节未采集区域沉水植物的盖度数据进行插值分析,并对插值结果进行交叉验证,以确定方法的精确度交叉验证结果表明,插值精确度反距离权重法径向基函数法普通克里金法研究结果为回声探测与插值分析方法结合在大尺度浅水水体中沉水植物监测应用提供了技术支撑.     

Iridium anomalies and fractionated siderophile element patterns in impact ejecta, Brockman Iron Formation, Hamersley Basin, Western Australia: evidence for a major asteroid impact in simatic crustal regions of the early Proterozoic earth

A stratigraphically consistent <20-cm-thick unit of microkrystite spherule and microtektite-bearing impact fallout ejecta overlying volcanic tuff of the 4th Shale Macroband (DGS4) of the Dales Gorge Member (2.47–2.50 Ga), Brockman Iron Formation, Hamersley Group, Western Australia, displays anomalous platinum group element (PGE) and other trace metal patterns. The unit has high Ir (13 ppb) and Pt (35 ppb), and low Pd (2.7 ppb) and Au (1.55–1.88 ppb). The low Pd/Ir ratios and low Cr/V suggest depletion in volatile PGE and metals relative to refractory PGE and V, contrasted to the ubiquitous high Pd/Ir of most terrestrial rocks. Marked depletion in the volatile Rare Earth Element (REE) abundances in stilpnomelane spherule cores is consistent with this model. The loss of volatile PGE, analogous to relations in 3.24 Ga impact fallout units of the Barberton greenstone belt (S3 and S4), suggests fractionation related to atmospheric spherule condensation. The microkrystite spherule unit locally incorporate fragments and up to meter-scale boulders of banded chert and stromatolite carbonate, suggesting tsunami transport postdating spherule deposition. DGS4 microkrystite spherules are dominated by stilpnomelane mantled by K-feldspar shells, which consist of inward-radiating fibrous feldspar aggregates suggestive of devitrification. The K and REE enrichment of spherule margins are contrasted to flat REE patterns of the stilpnomelane cores, suggesting adsorption of lithophile elements during settling of the spherules through the hydrosphere. K-feldspar shells contain submicron-scale Ni metal, oxide, sulfide and arsenide grains and euhedral needles of feldspar-exsolved ilmenite. Associated magnetite may have high nickel (<1.25% NiO). The generally mafic composition of the spherules and high Ni/Cr and Ni/Co are consistent with a target mafic-ultramafic crust, consistent with the lack of shock-metamorphosed quartz. Mixing calculations suggest a contribution of 2.5–3% projectile component to the impact-generated volatile cloud. Conservative mass balance estimates derived from the Ir and Pt flux, assuming global extent of a 10-cm-thick spherule unit and chondritic projectile composition, suggest an asteroid diameter on the scale of 30 km. Similar estimates are obtained from spherule sizes, which in DGS4 reach a mean diameter of 2.0 mm in aerodynamically elongate spherules. The evidence implies formation of an impact basin on the scale of 400 km in simatic/oceanic regions of the early Proterozoic crust.     

Application of Multiboost-KELM algorithm to alleviate the collinearity of log curves for evaluating the abundance of organic matter in marine mud shale reservoirs: a case study in Sichuan Basin,China

The total organic carbon (TOC) content reflects the abundance of organic matter in marine mud shale reservoirs and reveals the hydrocarbon potential of the reservoir. Traditional TOC calculation methods based on statistical and machine learning have limited effect in improving the computational accuracy of marine mud shale reservoirs. In this study, the collinearity between log curves of marine mud shale reservoirs was revealed for the first time, which was found to be adverse to the improvement of TOC calculation accuracy. To this end, a new TOC prediction method was proposed based on Multiboost-Kernel extreme learning machine (Multiboost-KELM) bridging geostatistics and machine learning technique. The proposed method not only has good data mining ability, generalization ability and sound adaptivity to small samples, but also has the ability to improve the computational accuracy by reducing the effect of collinearity between logging curves. In prediction of two mud shale reservoirs of Sichuan basin with proposed model, the results showed that the predicted value of TOC was in good consistence with the measured value. The root-mean-square error of TOC predicting results was reduced from 0.415 (back-propagation neural networks) to 0.203 and 1.117 (back-propagation neural networks) to 0.357, respectively; the relative error value decreased by up to 8.9%. The Multiboost-KELM algorithm proposed in this paper can effectively improve the prediction accuracy of TOC in marine mud shale reservoir.     

Pecten as a new substrate for IcPD dating: The quaternary raised beaches in the Gulf of Corinth,Greece

Intra-crystalline protein diagenesis (IcPD), a recent development of amino acid racemization dating (AAR), is now established as a reliable geochronological tool for the Quaternary. However, extending the method to new biominerals requires extensive testing in order to provide evidence for the closed-system behaviour of the intra-crystalline proteins and to assess the temporal span that can be covered.Here we present results from high-temperature experiments on the IcPD of the bivalve Pecten, demonstrating that a fraction of proteins can be isolated from a bleach-resistant mineral matrix, which effectively operates as a closed system under conditions of accelerated diagenesis in the laboratory. Analyses of Pecten from the well-dated terrace system of the Gulf of Corinth (Greece) provided a pilot test for the integrity of the intra-crystalline fraction in subfossil shells. The small sample sizes in this preliminary study preclude a full assessment of the aminostratigraphic power of Pecten IcPD, but a concordance is observed between the extent of IcPD and sites dating from between MIS 5 and MIS 11.We conclude that Pecten is a potentially good substrate for IcPD dating in the Mediterranean, and that the temporal limit of the technique in this area lies beyond MIS 11.     

Imposex in Thais gradata and Chicoreus capucinus (Mollusca, Neogastropoda, Muricidae) from the Straits of Johor: A Case Study using Penis Length, Area and Weight as Measures of Imposex Severity

Imposex, or the presence of a pseudopenis in female snails, is quantified by comparing the length of the female pseudopenis with the male penis. However, many muricid gastropods in the Malayan archipelago possess penes that are flagellate and coiled, making linear measurement difficult under the microscope. In addition, it is unclear if penis length is dependent on shell size. Accurate assessment of penis size is a necessary step towards determining the severity of imposex (and implicitly, the amount of organotins from antifouling paints that is associated with this phenomenon). Two mangrove muricid gastropod species, Thais gradata and Chicoreus capucinus, were collected from six sites along the Johor Straits. Penis/pseudopenis length and area measurements based on digitalized camera lucida drawings were generally well correlated with penis/pseudopenis dry weight, although penis area appeared to be a marginally better variable than penis length for T. gradata. Penis dry weight was also well correlated with shell height in male T. gradata, while no significant correlation was detected for female T. gradata, suggesting pseudopenis size alone may be a better measure of imposex than the relative penis size index (RPSI) for this species. There was no obvious relationship between penis size and shell height for either sex in C. capucinus.