Deriving leaf mass per area (LMA) from foliar reflectance across a variety of plant species using continuous wavelet analysis

Leaf mass per area (LMA), the ratio of leaf dry mass to leaf area, is a trait of central importance to the understanding of plant light capture and carbon gain. It can be estimated from leaf reflectance spectroscopy in the infrared region, by making use of information about the absorption features of dry matter. This study reports on the application of continuous wavelet analysis (CWA) to the estimation of LMA across a wide range of plant species. We compiled a large database of leaf reflectance spectra acquired within the framework of three independent measurement campaigns (ANGERS, LOPEX and PANAMA) and generated a simulated database using the PROSPECT leaf optical properties model. CWA was applied to the measured and simulated databases to extract wavelet features that correlate with LMA. These features were assessed in terms of predictive capability and robustness while transferring predictive models from the simulated database to the measured database. The assessment was also conducted with two existing spectral indices, namely the Normalized Dry Matter Index (NDMI) and the Normalized Difference index for LMA (ND_LMA).Five common wavelet features were determined from the two databases, which showed significant correlations with LMA (R²: 0.51–0.82, p < 0.0001). The best robustness (R² = 0.74, RMSE = 18.97 g/m² and Bias = 0.12 g/m²) was obtained using a combination of two low-scale features (1639 nm, scale 4) and (2133 nm, scale 5), the first being predominantly important. The transferability of the wavelet-based predictive model to the whole measured database was either better than or comparable to those based on spectral indices. Additionally, only the wavelet-based model showed consistent predictive capabilities among the three measured data sets. In comparison, the models based on spectral indices were sensitive to site-specific data sets. Integrating the ND_LMA spectral index and the two robust wavelet features improved the LMA prediction. One of the bands used by this spectral index, 1368 nm, was located in a strong atmospheric water absorption region and replacing it with the next available band (1340 nm) led to lower predictive accuracies. However, the two wavelet features were not affected by data quality in the atmospheric absorption regions and therefore showed potential for canopy-level investigations. The wavelet approach provides a different perspective into spectral responses to LMA variation than the traditional spectral indices and holds greater promise for implementation with airborne or spaceborne imaging spectroscopy data for mapping canopy foliar dry biomass.     

Detecting pruning of individual stems using Airborne Laser Scanning data captured from an Unmanned Aerial Vehicle

Modern forest management involves implementing optimal pruning regimes. These regimes aim to achieve the highest quality timber in the shortest possible rotation period. Although a valuable addition to forest management activities, tracking the application of these treatments in the field to ensure best practice management is not economically viable. This paper describes the use of Airborne Laser Scanner (ALS) data to track the rate of pruning in a Eucalyptus globulus stand. Data is obtained from an Unmanned Aerial Vehicle (UAV) and we describe automated processing routines that provide a cost-effective alternative to field sampling. We manually prune a 500 m² plot to 2.5 m above the ground at rates of between 160 and 660 stems/ha. Utilising the high density ALS data, we first derived crown base height (CBH) with an RMSE of 0.60 m at each stage of pruning. Variability in the measurement of CBH resulted in both false positive (mean rate of 11%) and false negative detection (3.5%), however, detected rates of pruning of between 96% and 125% of the actual rate of pruning were achieved. The successful automated detection of pruning within this study highlights the suitability of UAV laser scanning as a cost-effective tool for monitoring forest management activities.     

Vegetation chlorophyll estimates in the Amazon from multi-angle MODIS observations and canopy reflectance model

As a preparatory study for future hyperspectral missions that can measure canopy chemistry, we introduce a novel approach to investigate whether multi-angle Moderate Resolution Imaging Spectroradiometer (MODIS) data can be used to generate a preliminary database with long-term estimates of chlorophyll. MODIS monthly chlorophyll estimates between 2000 and 2015, derived from a fully coupled canopy reflectance model (ProSAIL), were inspected for consistency with eddy covariance fluxes, tower-based hyperspectral images and chlorophyll measurements. MODIS chlorophyll estimates from the inverse model showed strong seasonal variations across two flux-tower sites in central and eastern Amazon. Marked increases in chlorophyll concentrations were observed during the early dry season. Remotely sensed chlorophyll concentrations were correlated to field measurements (r² = 0.73 and r² = 0.98) but the data deviated from the 1:1 line with root mean square errors (RMSE) ranging from 0.355 μg cm⁻² (Tapajós tower) to 0.470 μg cm⁻² (Manaus tower). The chlorophyll estimates were consistent with flux tower measurements of photosynthetically active radiation (PAR) and net ecosystem productivity (NEP). We also applied ProSAIL to mono-angle hyperspectral observations from a camera installed on a tower to scale modeled chlorophyll pigments to MODIS observations (r² = 0.73). Chlorophyll pigment concentrations (Chl_A+B) were correlated to changes in the amount of young and mature leaf area per month (0.59 ≤  r² ≤  0.64). Increases in MODIS observed Chl_A+B were preceded by increased PAR during the dry season (0.61 ≤ r² ≤  0.62) and followed by changes in net carbon uptake. We conclude that, at these two sites, changes in LAI, coupled with changes in leaf chlorophyll, are comparable with seasonality of plant productivity. Our results allowed the preliminary development of a 15-year time series of chlorophyll estimates over the Amazon to support canopy chemistry studies using future hyperspectral sensors.     

Improving the prediction of arsenic contents in agricultural soils by combining the reflectance spectroscopy of soils and rice plants

Visible and near-infrared reflectance spectroscopy provides a beneficial tool for investigating soil heavy metal contamination. This study aimed to investigate mechanisms of soil arsenic prediction using laboratory based soil and leaf spectra, compare the prediction of arsenic content using soil spectra with that using rice plant spectra, and determine whether the combination of both could improve the prediction of soil arsenic content. A total of 100 samples were collected and the reflectance spectra of soils and rice plants were measured using a FieldSpec3 portable spectroradiometer (350–2500 nm). After eliminating spectral outliers, the reflectance spectra were divided into calibration (n = 62) and validation (n = 32) data sets using the Kennard-Stone algorithm. Genetic algorithm (GA) was used to select useful spectral variables for soil arsenic prediction. Thereafter, the GA-selected spectral variables of the soil and leaf spectra were individually and jointly employed to calibrate the partial least squares regression (PLSR) models using the calibration data set. The regression models were validated and compared using independent validation data set. Furthermore, the correlation coefficients of soil arsenic against soil organic matter, leaf arsenic and leaf chlorophyll were calculated, and the important wavelengths for PLSR modeling were extracted. Results showed that arsenic prediction using the leaf spectra (coefficient of determination in validation, R_v² = 0.54; root mean square error in validation, RMSE_v = 12.99 mg kg⁻¹; and residual prediction deviation in validation, RPD_v = 1.35) was slightly better than using the soil spectra (R_v² = 0.42, RMSE_v = 13.35 mg kg⁻¹, and RPD_v = 1.31). However, results also showed that the combinational use of soil and leaf spectra resulted in higher arsenic prediction (R_v² = 0.63, RMSE_v = 11.94 mg kg⁻¹, RPD_v = 1.47) compared with either soil or leaf spectra alone. Soil spectral bands near 480, 600, 670, 810, 1980, 2050 and 2290 nm, leaf spectral bands near 700, 890 and 900 nm in PLSR models were important wavelengths for soil arsenic prediction. Moreover, soil arsenic showed significantly positive correlations with soil organic matter (r = 0.62, p < 0.01) and leaf arsenic (r = 0.77, p < 0.01), and a significantly negative correlation with leaf chlorophyll (r = −0.67, p < 0.01). The results showed that the prediction of arsenic contents using soil and leaf spectra may be based on their relationships with soil organic matter and leaf chlorophyll contents, respectively. Although RPD of 1.47 was below the recommended RPD of >2 for soil analysis, arsenic prediction in agricultural soils can be improved by combining the leaf and soil spectra.     

Testing estimation of water surface in Italian rice district from MODIS satellite data

Recent changes in rice crop management within Northern Italy rice district led to a reduction of seeding in flooding condition, which may have an impact on reservoir water management and on the animal and plant communities that depend on the flooded paddies. Therefore, monitoring and quantifying the spatial and temporal variability of water presence in paddy fields is becoming important. In this study we present a method to estimate dynamics of presence of standing water (i.e. fraction of flooded area) in rice fields using MODIS data. First, we produced high resolution water presence maps from Landsat by thresholding the Normalised Difference Flood Index (NDFI) made: we made it by comparing five Landsat 8 images with field-obtained information about rice field status and water presence. Using these data we developed an empirical model to estimate the flooding fraction of each MODIS cell. Finally we validated the MODIS-based flooding maps with both Landsat and ground information. Results showed a good predictability of water surface from Landsat (OA = 92%) and a robust usability of MODIS data to predict water fraction (R² = 0.73, EF = 0.57, RMSE = 0.13 at 1 × 1 km resolution). Analysis showed that the predictive ability of the model decreases with the greening up of rice, so we used NDVI to automatically discriminate estimations for inaccurate cells in order to provide the water maps with a reliability flag. Results demonstrate that it is possible to monitor water dynamics in rice paddies using moderate resolution multispectral satellite data. The achievement is a proof of concept for the analysis of MODIS archives to investigate irrigation dynamics in the last 15 years to retrieve information for ecological and hydrological studies.     

Mapping seagrass coverage and spatial patterns with high spatial resolution IKONOS imagery

Seagrass habitats in subtidal coastal waters provide a variety of ecosystem functions and services and there is an increasing need to acquire information on spatial and temporal dynamics of this resource. Here, we explored the capability of IKONOS (IKO) data of high resolution (4 m) for mapping seagrass cover [submerged aquatic vegetation (%SAV) cover] along the mid-western coast of Florida, USA. We also compared seagrass maps produced with IKO data with that obtained using the Landsat TM sensor with lower resolution (30 m). Both IKO and TM data, collected in October 2009, were preprocessed to calculate water depth invariant bands to normalize the effect of varying depth on bottom spectra recorded by the two satellite sensors and further the textural information was extracted from IKO data. Our results demonstrate that the high resolution IKO sensor produced a higher accuracy than the TM sensor in a three-class % SAV cover classification. Of note is that the OA of %SAV cover mapping at our study area created with IKO data was 5–20% higher than that from other studies published. We also examined the spatial distribution of seagrass over a spatial range of 4–240 m using the Ripley’s K function [L(d)] and IKO data that represented four different grain sizes [4 m (one IKO pixel), 8 m (2 × 2 IKO pixels), 12 m (3 × 3 IKO pixels), and 16 m (4 × 4 IKO pixels)] from moderate-dense seagrass cover along a set of six transects. The Ripley’s K metric repeatedly indicated that seagrass cover representing 4 m × 4 m pixels displayed a dispersed (or slightly dispersed) pattern over distances of <4–8 m, and a random or slightly clustered pattern of cover over 9–240 m. The spatial pattern of seagrass cover created with the three additional grain sizes (i.e., 2 × 24 m IKO pixels, 3 × 34 m IKO pixels, and 4 × 4 m IKO pixels) show a dispersed (or slightly dispersed) pattern across 4–32 m and a random or slightly clustered pattern across 33–240 m. Given the first report on using satellite observations to quantify seagrass spatial patterns at a spatial scale from 4 m to 240 m, our novel analyses of moderate-dense SAV cover utilizing Ripley’s K function illustrate how data obtained from the IKO sensor revealed seagrass spatial information that would be undetected by the TM sensor with a 30 m pixel size. Use of the seagrass classification scheme here, along with data from the IKO sensor with enhanced resolution, offers an opportunity to synoptically record seagrass cover dynamics at both small and large spatial scales.     

An easy and low-cost method for preprocessing and matching small-scale amateur aerial photography for assessing agricultural land use in Burkina Faso

In recent decades, the Kou watershed in south-western Burkina Faso has suffered from poor water management. Despite the abundance of water, most water users regularly face water shortages because of the increase in the amount of land under irrigation. To help them achieve a more equitable allocation of irrigated land, local stakeholders need an easily managed low-cost tool for monitoring and mapping these irrigated zones. The aim of this study was to develop a fast and low-cost procedure for mosaicing and geo referencing amateur small-scale aerial photographs for land-use surveys. Sets of tens (2009) and hundreds (2007) of low-altitude aerial photographs, with a resolution of 0.4 m and 0.8 m, respectively, were used to create a detailed land-cover map of typical African small-scale irrigated agriculture. A commercially available stitching tool and GIS allowed geo referenced 'mono-images’ to be constructed; both mosaics were warped on a high-resolution SPOT image with a horizontal root mean square error (RMSE) of about 11 m. The RMSE between the two image datasets was 2 m. This approach is less sensitive to atmospheric conditions that are non-predictable in programming satellite imagery.     

A new calibration of the effective scattering albedo and soil roughness parameters in the SMOS SM retrieval algorithm

This study focuses on the calibration of the effective vegetation scattering albedo (ω) and surface soil roughness parameters (H_R, and N_Rp, p = H,V) in the Soil Moisture (SM) retrieval from L-band passive microwave observations using the L-band Microwave Emission of the Biosphere (L-MEB) model. In the current Soil Moisture and Ocean Salinity (SMOS) Level 2 (L2), v620, and Level 3 (L3), v300, SM retrieval algorithms, low vegetated areas are parameterized by ω = 0 and H_R = 0.1, whereas values of ω = 0.06 − 0.08 and H_R = 0.3 are used for forests. Several parameterizations of the vegetation and soil roughness parameters (ω, H_R and N_Rp, p = H,V) were tested in this study, treating SMOS SM retrievals as homogeneous over each pixel instead of retrieving SM over a representative fraction of the pixel, as implemented in the operational SMOS L2 and L3 algorithms. Globally-constant values of ω = 0.10, H_R = 0.4 and N_Rp = −1 (p = H,V) were found to yield SM retrievals that compared best with in situ SM data measured at many sites worldwide from the International Soil Moisture Network (ISMN). The calibration was repeated for collections of in situ sites classified in different land cover categories based on the International Geosphere-Biosphere Programme (IGBP) scheme. Depending on the IGBP land cover class, values of ω and H_R varied, respectively, in the range 0.08–0.12 and 0.1–0.5. A validation exercise based on in situ measurements confirmed that using either a global or an IGBP-based calibration, there was an improvement in the accuracy of the SM retrievals compared to the SMOS L3 SM product considering all statistical metrics (R = 0.61, bias = −0.019 m³ m⁻³, ubRMSE = 0.062 m³ m⁻³ for the IGBP-based calibration; against R = 0.54, bias = −0.034 m³ m⁻³ and ubRMSE = 0.070 m³ m⁻³ for the SMOS L3 SM product). This result is a key step in the calibration of the roughness and vegetation parameters in the operational SMOS retrieval algorithm. The approach presented here is the core of a new forthcoming SMOS optimized SM product.     

Assessment of leaf carotenoids content with a new carotenoid index: Development and validation on experimental and model data

Leaf carotenoids content (LCar) is an important indicator of plant physiological status. Accurate estimation of LCar provides valuable insight into early detection of stress in vegetation. With spectroscopy techniques, a semi-empirical approach based on spectral indices was extensively used for carotenoids content estimation. However, established spectral indices for carotenoids that generally rely on limited measured data, might lack predictive accuracy for carotenoids estimation in various species and at different growth stages. In this study, we propose a new carotenoid index (CARI) for LCar assessment based on a large synthetic dataset simulated from the leaf radiative transfer model PROSPECT-5, and evaluate its capability with both simulated data from PROSPECT-5 and 4SAIL and extensive experimental datasets: the ANGERS dataset and experimental data acquired in field experiments in China in 2004. Results show that CARI was the index most linearly correlated with carotenoids content at the leaf level using a synthetic dataset (R² = 0.943, RMSE = 1.196 μg/cm²), compared with published spectral indices. Cross-validation results with CARI using ANGERS data achieved quite an accurate estimation (R² = 0.545, RMSE = 3.413 μg/cm²), though the RBRI performed as the best index (R² = 0.727, RMSE = 2.640 μg/cm²). CARI also showed good accuracy (R² = 0.639, RMSE = 1.520 μg/cm²) for LCar assessment with leaf level field survey data, though PRI performed better (R² = 0.710, RMSE = 1.369 μg/cm²). Whereas RBRI, PRI and other assessed spectral indices showed a good performance for a given dataset, overall their estimation accuracy was not consistent across all datasets used in this study. Conversely CARI was more robust showing good results in all datasets. Further assessment of LCar with simulated and measured canopy reflectance data indicated that CARI might not be very sensitive to LCar changes at low leaf area index (LAI) value, and in these conditions soil moisture influenced the LCar retrieval accuracy.     

Understanding long-term (1982–2013) patterns and trends in winter wheat spring green-up date over the North China Plain

Monitoring the spring green-up date (GUD) has grown in importance for crop management and food security. However, most satellite-based GUD models are associated with a high degree of uncertainty when applied to croplands. In this study, we introduced an improved GUD algorithm to extract GUD data for 32 years (1982–2013) for the winter wheat croplands on the North China Plain (NCP), using the third-generation normalized difference vegetation index form Global Inventory Modeling and Mapping Studies (GIMMS3g NDVI). The spatial and temporal variations in GUD with the effects of the pre-season climate and soil moisture conditions on GUD were comprehensively investigated. Our results showed that a higher correlation coefficient (r = 0.44, p < 0.01) and lower root mean square error (22 days) and bias (16 days) were observed in GUD from the improved algorithm relative to GUD from the MCD12Q2 phenology product. In spatial terms, GUD increased from the southwest (less than day of year (DOY) 60) to the northeast (more than DOY 90) of the NCP, which corresponded to spatial reductions in temperature and precipitation. GUD advanced in most (78%) of the winter wheat area on the NCP, with significant advances in 37.8% of the area (p < 0.05). GUD occurred later at high altitudes and in coastal areas than in inland areas. At the interannual scale, the average GUD advanced from DOY 76.9 in the 1980s (average 1982–1989) to DOY 73.2 in the 1990s (average 1991–1999), and to DOY 70.3 after 2000 (average 2000–2013), indicating an average advance of 1.8 days/decade (r = 0.35, p < 0.05). Although GUD is mainly controlled by the pre-season temperature, our findings underline that the effect of the pre-season soil moisture on GUD should also be considered. The improved GUD algorithm and satellite-based long-term GUD data are helpful for improving the representation of GUD in terrestrial ecosystem models and enhancing crop management efficiency.     

Modeling Mediterranean forest structure using airborne laser scanning data

The conservation of biological diversity is recognized as a fundamental component of sustainable development, and forests contribute greatly to its preservation. Structural complexity increases the potential biological diversity of a forest by creating multiple niches that can host a wide variety of species. To facilitate greater understanding of the contributions of forest structure to forest biological diversity, we modeled relationships between 14 forest structure variables and airborne laser scanning (ALS) data for two Italian study areas representing two common Mediterranean forests, conifer plantations and coppice oaks subjected to irregular intervals of unplanned and non-standard silvicultural interventions. The objectives were twofold: (i) to compare model prediction accuracies when using two types of ALS metrics, echo-based metrics and canopy height model (CHM)-based metrics, and (ii) to construct inferences in the form of confidence intervals for large area structural complexity parameters.Our results showed that the effects of the two study areas on accuracies were greater than the effects of the two types of ALS metrics. In particular, accuracies were less for the more complex study area in terms of species composition and forest structure. However, accuracies achieved using the echo-based metrics were only slightly greater than when using the CHM-based metrics, thus demonstrating that both options yield reliable and comparable results. Accuracies were greatest for dominant height (Hd) (R² = 0.91; RMSE% = 8.2%) and mean height weighted by basal area (R² = 0.83; RMSE% = 10.5%) when using the echo-based metrics, 99th percentile of the echo height distribution and interquantile distance. For the forested area, the generalized regression (GREG) estimate of mean Hd was similar to the simple random sampling (SRS) estimate, 15.5 m for GREG and 16.2 m SRS. Further, the GREG estimator with standard error of 0.10 m was considerable more precise than the SRS estimator with standard error of 0.69 m.     

Modeling biophysical properties of broad-leaved stands in the hyrcanian forests of Iran using fused airborne laser scanner data and ultraCam-D images

Inventories of mixed broad-leaved forests of Iran mainly rely on terrestrial measurements. Due to rapid changes and disturbances and great complexity of the silvicultural systems of these multilayer forests, frequent repetition of conventional ground-based plot surveys is often cost prohibitive. Airborne laser scanning (ALS) and multispectral data offer an alternative or supplement to conventional inventories in the Hyrcanian forests of Iran. In this study, the capability of a combination of ALS and UltraCam-D data to model stand volume, tree density, and basal area using random forest (RF) algorithm was evaluated. Systematic sampling was applied to collect field plot data on a 150 m × 200 m sampling grid within a 1100 ha study area located at 36°38′- 36°42′N and 54°24′–54°25′E. A total of 308 circular plots (0.1 ha) were measured for calculation of stand volume, tree density, and basal area per hectare. For each plot, a set of variables was extracted from both ALS and multispectral data. The RF algorithm was used for modeling of the biophysical properties using ALS and UltraCam-D data separately and combined. The results showed that combining the ALS data and UltraCam-D images provided a slight increase in prediction accuracy compared to separate modeling. The RMSE as percentage of the mean, the mean difference between observed and predicted values, and standard deviation of the differences using a combination of ALS data and UltraCam-D images in an independent validation at 0.1-ha plot level were 31.7%, 1.1%, and 84 m³ ha⁻¹ for stand volume; 27.2%, 0.86%, and 6.5 m² ha⁻¹ for basal area, and 35.8%, −4.6%, and 77.9 n ha⁻¹ for tree density, respectively. Based on the results, we conclude that fusion of ALS and UltraCam-D data may be useful for modeling of stand volume, basal area, and tree density and thus gain insights into structural characteristics in the complex Hyrcanian forests.     

Detection and mapping the spatial distribution of bracken fern weeds using the Landsat 8 OLI new generation sensor

Bracken fern is an invasive plant that presents serious environmental, ecological and economic problems around the world. An understanding of the spatial distribution of bracken fern weeds is therefore essential for providing appropriate management strategies at both local and regional scales. The aim of this study was to assess the utility of the freely available medium resolution Landsat 8 OLI sensor in the detection and mapping of bracken fern at the Cathedral Peak, South Africa. To achieve this objective, the results obtained from Landsat 8 OLI were compared with those derived using the costly, high spatial resolution WorldView-2 imagery. Since previous studies have already successfully mapped bracken fern using high spatial resolution WorldView-2 image, the comparison was done to investigate the magnitude of difference in accuracy between the two sensors in relation to their acquisition costs. To evaluate the performance of Landsat 8 OLI in discriminating bracken fern compared to that of Worldview-2, we tested the utility of (i) spectral bands; (ii) derived vegetation indices as well as (iii) the combination of spectral bands and vegetation indices based on discriminant analysis classification algorithm. After resampling the training and testing data and reclassifying several times (n = 100) based on the combined data sets, the overall accuracies for both Landsat 8 and WorldView-2 were tested for significant differences based on Mann-Whitney U test. The results showed that the integration of the spectral bands and derived vegetation indices yielded the best overall classification accuracy (80.08% and 87.80% for Landsat 8 OLI and WorldView-2 respectively). Additionally, the use of derived vegetation indices as a standalone data set produced the weakest overall accuracy results of 62.14% and 82.11% for both the Landsat 8 OLI and WorldView-2 images. There were significant differences {U (100) = 569.5, z = −10.8242, p < 0.01} between the classification accuracies derived based on Landsat OLI 8 and those derived using WorldView-2 sensor. Although there were significant differences between Landsat and WorldView-2 accuracies, the magnitude of variation (9%) between the two sensors was within an acceptable range. Therefore, the findings of this study demonstrated that the recently launched Landsat 8 OLI multispectral sensor provides valuable information that could aid in the long term continuous monitoring and formulation of effective bracken fern management with acceptable accuracies that are comparable to those obtained from the high resolution WorldView-2 commercial sensor.     

Determination of the crop row orientations from Formosat-2 multi-temporal and panchromatic images

This paper presents a technique developed for the retrieval of the orientation of crop rows, over anthropic lands dedicated to agriculture in order to further improve estimate of crop production and soil erosion management. Five crop types are considered: wheat, barley, rapeseed, sunflower, corn and hemp. The study is part of the multi-sensor crop-monitoring experiment, conducted in 2010 throughout the agricultural season (MCM’10) over an area located in southwestern France, near Toulouse. The proposed methodology is based on the use of satellite images acquired by Formosat-2, at high spatial resolution in panchromatic and multispectral modes (with spatial resolution of 2 and 8 m, respectively). Orientations are derived and evaluated for each image and for each plot, using directional spatial filters (45° and 135°) and mathematical morphology algorithms. “Single-date” and “multi-temporal” approaches are considered. The single-date analyses confirm the good performances of the proposed method, but emphasize the limitation of the approach for estimating the crop row orientation over the whole landscape with only one date. The multi-date analyses allow (1) determining the most suitable agricultural period for the detection of the row orientations, and (2) extending the estimation to the entire footprint of the study area. For the winter crops (wheat, barley and rapeseed), best results are obtained with images acquired just after harvest, when surfaces are covered by stubbles or during the period of deep tillage (0.27 > R² > 0.99 and 7.15° > RMSE > 43.02°). For the summer crops (sunflower, corn and hemp), results are strongly crop and date dependents (0 > R² > 0.96, 10.22° > RMSE > 80°), with a well-marked impact of flowering, irrigation equipment and/or maximum crop development. Last, the extent of the method to the whole studied zone allows mapping 90% of the crop row orientations (more than 45,000 ha) with an error inferior to 40°, associated to a confidence index ranging from 1 to 5 for each agricultural plot.     

Spectral resampling based on user-defined inter-band correlation filter: C3 and C4 grass species classification

In this paper, a user-defined inter-band correlation filter function was used to resample hyperspectral data and thereby mitigate the problem of multicollinearity in classification analysis. The proposed resampling technique convolves the spectral dependence information between a chosen band-centre and its shorter and longer wavelength neighbours. Weighting threshold of inter-band correlation (WTC, Pearson's r) was calculated, whereby r = 1 at the band-centre. Various WTC (r = 0.99, r = 0.95 and r = 0.90) were assessed, and bands with coefficients beyond a chosen threshold were assigned r = 0. The resultant data were used in the random forest analysis to classify in situ C₃ and C₄ grass canopy reflectance. The respective WTC datasets yielded improved classification accuracies (kappa = 0.82, 0.79 and 0.76) with less correlated wavebands when compared to resampled Hyperion bands (kappa = 0.76). Overall, the results obtained from this study suggested that resampling of hyperspectral data should account for the spectral dependence information to improve overall classification accuracy as well as reducing the problem of multicollinearity.     

Comparative analysis of different retrieval methods for mapping grassland leaf area index using airborne imaging spectroscopy

Fine scale maps of vegetation biophysical variables are useful status indicators for monitoring and managing national parks and endangered habitats. Here, we assess in a comparative way four different retrieval methods for estimating leaf area index (LAI) in grassland: two radiative transfer model (RTM) inversion methods (one based on look-up-tables (LUT) and one based on predictive equations) and two statistical modelling methods (one partly, the other entirely based on in situ data). For prediction, spectral data were used that had been acquired over Majella National Park in Italy by the airborne hyperspectral HyMap instrument. To assess the performance of the four investigated models, the normalized root mean squared error (nRMSE) and coefficient of determination (R²) between estimates and in situ LAI measurements are reported (n = 41). Using a jackknife approach, we also quantified the accuracy and robustness of empirical models as a function of the size of the available calibration data set. The results of the study demonstrate that the LUT-based RTM inversion yields higher accuracies for LAI estimation (R² = 0.91, nRMSE = 0.18) as compared to RTM inversions based on predictive equations (R² = 0.79, nRMSE = 0.38). The two statistical methods yield accuracies similar to the LUT method. However, as expected, the accuracy and robustness of the statistical models decrease when the size of the calibration database is reduced to fewer samples. The results of this study are of interest for the remote sensing community developing improved inversion schemes for spaceborne hyperspectral sensors applicable to different vegetation types. The examples provided in this paper may also serve as illustrations for the drawbacks and advantages of physical and empirical models.     

A radiative transfer model-based method for the estimation of grassland aboveground biomass

This paper presents a novel method to derive grassland aboveground biomass (AGB) based on the PROSAILH (PROSPECT + SAILH) radiative transfer model (RTM). Two variables, leaf area index (LAI, m²m⁻², defined as a one-side leaf area per unit of horizontal ground area) and dry matter content (DMC, gcm⁻², defined as the dry matter per leaf area), were retrieved using PROSAILH and reflectance data from Landsat 8 OLI product. The result of LAI × DMC was regarded as the estimated grassland AGB according to their definitions. The well-known ill-posed inversion problem when inverting PROSAILH was alleviated using ecological criteria to constrain the simulation scenario and therefore the number of simulated spectra. A case study of the presented method was applied to a plateau grassland in China to estimate its AGB. The results were compared to those obtained using an exponential regression, a partial least squares regression (PLSR) and an artificial neural networks (ANN). The RTM-based method offered higher accuracy (R² = 0.64 and RMSE = 42.67 gm⁻²) than the exponential regression (R² = 0.48 and RMSE = 41.65 gm⁻²) and the ANN (R² = 0.43 and RMSE = 46.26 gm⁻²). However, the proposed method offered similar performance than PLSR as presented better determination coefficient than PLSR (R² = 0.55) but higher RMSE (RMSE = 37.79 gm⁻²). Although it is still necessary to test these methodologies in other areas, the RTM-based method offers greater robustness and reproducibility to estimate grassland AGB at large scale without the need to collect field measurements and therefore is considered the most promising methodology.     

Modeling BVOC isoprene emissions based on a GIS and remote sensing database

This paper presents a geographic information systems (GIS) model to relate biogenic volatile organic compounds (BVOCs) isoprene emissions to ecosystem type, as well as environmental drivers such as light intensity, temperature, landscape factor and foliar density. Data and techniques have recently become available which can permit new improved estimates of isoprene emissions over Hong Kong. The techniques are based on Guenther et al., 1993, Guenther et al., 1999 model. The spatially detailed mapping of isoprene emissions over Hong Kong at a resolution of 100 m and a database has been constructed for retrieval of the isoprene maps from February 2007 to January 2008. This approach assigns emission rates directly to ecosystem types not to individual species, since unlike in temperate regions where one or two single species may dominate over large regions, Hong Kong's vegetation is extremely diverse with up to 300 different species in 1 ha. Field measurements of emissions by canister sampling obtained a range of ambient emissions according to different climatic conditions for Hong Kong's main ecosystem types in both urban and rural areas, and these were used for model validation. Results show the model-derived isoprene flux to have high to moderate correlations with field observations (i.e. r² = 0.77, r² = 0.63, r² = 0.37 for all 24 field measurements, subset for summer, and winter data, respectively) which indicate the robustness of the approach when applied to tropical forests at detailed level, as well as the promising role of remote sensing in isoprene mapping. The GIS model and raster database provide a simple and low cost estimation of the BVOC isoprene in Hong Kong at detailed level. City planners and environmental authorities may use the derived models for estimating isoprene transportation, and its interaction with anthropogenic pollutants in urban areas.     

Dry-season vegetation mass and cover fraction from SWIR1.6 and SWIR2.1 band ratio: Ground-radiometer and MODIS data in the Sahel

The potential of the short-wave infrared (SWIR) bands to detect dry-season vegetation mass and cover fraction is investigated with ground radiometry and MODIS data, confronted to vegetation data collected in rangeland and cropland sites in the Sahel (Senegal, Niger, Mali). The ratio of the 1.6 and 2.1 μm bands (called STI) acquired with a ground radiometer proved well suited for grassland mass estimation up to 2500 kg/ha with a linear relation (r² = 0.89). A curvilinear regression is accurate for masses ranging up to 3500 kg/ha. STI proved also well suited to retrieve vegetation cover fraction in crop fields, fallows and rangelands. Such dry-season monitoring, with either ground or satellite data, has important applications for forage, erosion risk and fire risk assessment in semi-arid areas.     

Upscaling plot-scale soil respiration in winter wheat and summer maize rotation croplands in Julu County,North China

Soil respiration (R_s) data from 45 plots were used to estimate the spatial patterns of R_s during the peak growing seasons of winter wheat and summer maize in Julu County, North China, by combining satellite remote sensing data, field-measured data, and a support vector regression (SVR) model. The observed R_s values were well reproduced by the model at the plot scale, with a root-mean-square error (RMSE) of 0.31 μmol CO₂ m⁻² s⁻¹ and a coefficient of determination (R²) of 0.73. No significant difference was detected between the prediction accuracy of the SVR model for winter wheat and summer maize. With forcing from satellite remote sensing data and gridded soil property data, we used the SVR model to predict the spatial distributions of R_s during the peak growing seasons of winter wheat and summer maize rotation croplands in Julu County. The SVR model captured the spatial variations of R_s at the county scale. The satellite-derived enhanced vegetation index was found to be the most important input used to predict R_s. Removal of this variable caused an RMSE increase from 0.31 μmol CO₂ m⁻² s⁻¹ to 0.42 μmol CO₂ m⁻² s⁻¹. Soil properties such as soil organic carbon (SOC) content and soil bulk density (SBD) were the second most important factors. Their removal led to an RMSE increase from 0.31 μmol CO₂ m⁻² s⁻¹ to 0.37 μmol CO₂ m⁻² s⁻¹. The SVR model performed better than multiple regression in predicting spatial variations of R_s in winter wheat and summer maize rotation croplands, as shown by the comparison of the R² and RMSE values of the two algorithms. The spatial patterns of R_s are better captured using the SVR model than performing multiple regression, particularly for the relatively high and relatively low R_s values at the center and northeast study areas. Therefore, SVR shows promise for predicting spatial variations of R_s values on the basis of remotely sensed data and gridded soil property data at the county scale.