Refining habitat requirements of submersed aquatic vegetation: Role of optical models

A model of the spectral diffuse attenuation coefficient of downwelling irradiance was constructed for Chincoteague Bay, Maryland, and the Rhode River, Maryland. The model is written in terms of absorption spectra of dissolved yellow substance, the chlorophyll-specific absorption of phytoplankton, and absorption and scattering by particulate matter (expressed as turbidity). Based on published light requirements for submersed aquatic vegetation (SAV) in Chesapeake Bay, the model is used to calculate the range of water-quality conditions that permit survival of SAV at various depths. Because the model is spectrally based, it can be used to calculate the attenuation of either photosynthetically active radiation (PAR, equally weighted quanta from 400 nm to 700 nm) or photosyntheticallyusable radiation (PUR, the integral of the quantum spectrum weighted by the pigment absorption spectrum of SAV). PUR is a more accurate measurement of light that can be absorbed by SAV and it is more strongly affected by phytoplankton chlorophyll in the water column than is PAR. For estuaries in which light attenuation is dominated by turbidity and chlorophyll, the model delimits regions in which turbidity alone (chlorophyll <10 μg 1^?1), chlorophyll alone (turbidity <1 NTU) or both factors (chlorophyll >10 μg 1^?1, turbidity >1 NTU) must be reduced to improve survival depths for SAV.     

Phosphorus and nitrogen inputs to Florida Bay: The importance of the everglades watershed

A large environmental restoration project designed to improve the hydrological conditions of the Florida Everglades and increase freshwater flow to Florida Bay is underway. Here we explore how changing freshwater inflow to the southern Everglades is likely to change the input of nutrients to Florida Bay. We calculated annual inputs of water, total phosphorus (TP), total nitrogen (TN), and dissolved inorganic nitrogen (DIN) to Everglades National Park (ENP) since the early 1980s. We also examined changes in these nutrient concentrations along transects through the wetland to Florida Bay and the Gulf of Mexico. We found that the interannual variability of the water discharge into ENP greatly exceeded the interannual variability of flow-weighted mean nutrient concentrations in this water. Nutrient inputs to ENP were largely determined by discharge volume. These inputs were high in TN and low in TP; for two ENP watersheds TN averaged 1.5 mg l^?1 (0.11 mM) and 0.9 mg l^?1 (0.06 mM) and TP averaged 15 μg l^?1 (0.47 μM) and 9 μg l^?1 (0.28 μM). Both TP and DIN that flowed into ENP wetlands were rapidly removed from the water. Over a 3-km section of Taylor Slough, TP decreased from a flow-weighted mean of 11.6 μg l^?1 (0.37 μM) (0.20 μM) and DIN decreased from 240 μg l^?1 (17μM) to 36 μ l^?1 (2.6 μM). In contrast, TN, which was generally 95% organic N, changed little as it passed through the wetland. This resulted in molar TN:TP ratios exceeding 400 in the wetland. Decreases in TN concentrations only occurred in areas with relatively high P availability, such as the wetlands to the north of ENP and in the mangrove streams of western ENP. Increasing freshwater flow to Florida Bay in an effort to restore the Everglades and Florida Bay ecosystems is thus not likely to increase P inputs from the freshwater Everglades but is likely to increase TN inputs. Based on a nutrient budget of Florida Bay, both N and P inputs from the Gulf of Mexico greatly exceed inputs from the Everglades, as well as inputs from the atmosphere and the Florida Keys. We estimate that the freshwater Everglades contribute <3% of all P inputs and <12% of all N inputs to the bay. Evaluating the effect of ecosystem restoration efforts on Florida Bay requires greater understanding of the interactions of the bay with the Gulf of Mexico and adjacent mangrove ecosystems.     

Seasonal distributions of suspended particulate material and dissolved nutrients in a coastal plain estuary

The temporal and spatial distributions of salinity, dissolved oxygen, suspended particulate material (SPM), and dissolved nutrients were determined during 1983 in the Choptank River, an estuarine tributary of Chesapeake Bay. During winter and spring freshets, the middle estuary was strongly stratified with changes in salinity of up to 5‰ occurring over 1 m depth intervals. Periodically, the lower estuary was stratified due to the intrusion of higher salinity water from the main channel of Chesapeake Bay. During summer this intrusion caused minimum oxygen and maximum NH₄ ⁺ concentrations at the mouth of the Choptank River estuary. Highest concentrations of SPM, particulate carbon (PC), particulate nitrogen (PN), total nitrogen (TN), total phosphorous (TP) and dissolved inorganic nitrogen (DIN) occurred in the upper estuary during the early spring freshet. In contrast, minimum soluble reactive phosphate (SRP) concentrations were highest in the upper estuary in summer when freshwater discharge was low. In spring, PC:PN ratios were >13, indicating a strong influence by allochthonous plant detritus on PC and PN concentrations. However, high concentrations of PC and PN in fall coincided with maximum chlorophyll a concentrations and PC:PN ratios were <8, indicating in situ productivity controlled PC and PN levels. During late spring and summer, DIN concentrations decreased from >100 to <10 μg-at l^?1, resulting mainly from the nonconservative behavior of NO₃ ^?, which dominated the DIN pool. Atomic ratios of both the inorganic and total forms of N and P exceeded 100 in spring, but by summer, ratios decreased to <5 and <15, respectively. The seasonal and spatial changes in both absolute concentrations and ratios of N and P reflect the strong influence of allochthonous inputs on nutrient distributions in spring, followed by the effects of internal processes in summer and fall.     

Spatial Distribution of Dissolved Radon in the Choptank River and Its Tributaries: Implications for Groundwater Discharge and Nitrate Inputs

The Choptank River, Chesapeake Bay’s largest eastern-shore tributary, is experiencing increasing nutrient loading and eutrophication. Productivity in the Choptank is predominantly nitrogen-limited, and most nitrogen inputs occur via discharge of high-nitrate groundwater into the river system’s surface waters. However, spatial patterns in the magnitude and quality of groundwater discharge are not well understood. In this study, we surveyed the activity of ²²²Rn, a natural groundwater tracer, in the Choptank’s main tidal channel, the large tidal tributary Tuckahoe Creek, smaller tidal and non-tidal tributaries around the basin, and groundwater discharging into those tributaries, measuring nitrate and salinity concurrently. ²²²Rn activities were <100 Bq m^?3 in the main tidal channel and 100–700 Bq m^?3 in the upper Choptank River and Tuckahoe Creek, while the median Rn activities of fresh tributaries and discharging groundwater were 1,000 and 7,000 Bq m^?3, respectively. Nitrate-N concentrations were <0.01 mg L^?1 throughout most of the tidal channel, 1.5–3 mg L^?1 in the upper reaches, up to 13 mg L^?1 in tributary samples, and up to 19.6 mg L^?1 in groundwater. Nitrate concentrations in tributary surface water were correlated with Rn activity in three of five sub-watersheds, indicating a groundwater nitrate source. ²²²Rn and salinity mass balances indicated that Rn-enriched groundwater discharges directly into the Choptank’s tidal waters and suggested that it consists of a mixture of fresh groundwater and brackish re-circulated estuarine water. Further sampling is necessary to constrain the Rn activity and nitrate concentration of discharging groundwater and quantify direct discharge and associated nitrogen inputs.     

Influences of Salinity and Light Availability on Abundance and Distribution of Tidal Freshwater and Oligohaline Submersed Aquatic Vegetation

Submersed aquatic vegetation (SAV) communities have undergone declines worldwide, exposing them to invasions from non-native species. Over the past decade, the invasive species Hydrilla verticillata has been documented in several tributaries of the lower Chesapeake Bay, Virginia. We used annual aerial mapping surveys from 1998 to 2007, integrated with spatial analyses of water quality data, to analyze the patterns and rates of change of a H. verticillata-dominated SAV community and relate them to varying salinity and light conditions. Periods of declining SAV coverage corresponded to periods where salinities exceeded 7 and early growing season (April to May) Secchi depths were <0.4 m. Increases were driven by the expansion of H. verticillata along with several other species into the upper estuary, where some areas experienced an 80% increase in cover. Field investigations revealed H. verticillata dominance to be limited to the upper estuary where total suspended solid concentrations during the early growing season were <15 mg l⁻¹ and salinity remained <3. The effect of poor early growing season water clarity on annual SAV growth highlights the importance of water quality during this critical life stage. Periods of low clarity combined with periodic salinity intrusions may limit the dominance of H. verticillata in these types of estuarine systems. This study shows the importance of the use of these types of biologically relevant episodic events to supplement seasonal habitat requirements and also provides evidence for the potential important role of invasive species in SAV community recovery.     

Importance of terrestrially-derived,particulate phosphorus to phosphorus dynamics in a west coast estuary

Allochthonous inputs of suspended particulate matter from freshwater environments to estuaries influence nutrient cycling and ecosystem metabolism. Contributions of different biogeochemical reactions to phosphorus dynamics in Tomales Bay, California, were determined by measuring dissolved inorganic phosphorus exchange between water and suspended particulate matter in response to changes in salinity, pH, and sediment redox. In serum bottle incubations of suspended particulate matter collected from the major tributary to the bay, dissolved inorganic phosphorus release increased with salinity during the initial 8 h; between 1–3 d, however, rates of release were similar among treatments of 0 psu, 16 psu, 24 psu, and 32 psu. Release was variable over the pH range 4–8.5, but dissolved inorganic phosphorus releases from sediments incubated for 24 h at the pH of fresh water (7.3) and seawater (8.1) were similarly small. Under oxidizing conditions, dissolved inorganic phosphorus release was small or dissolved inorganic phosphorus was taken up by particulate matter with total P content <50 μmoles P g^?1; release was greater from suspended particulate matter with total phosphorus content >50 μmoles P g^?1. In contrast, under reducing conditions maintained by addition of free sulfide (HS^?), dissolved inorganic phosphorus was released from particles at all concentrations of total phosphorus in suspended particulate matter, presumably from the reduction of iron oxides. Since extrapolated dissolved inorganic phosphorus release from this abiotic source can account for only 12.5% of the total dissolved inorganic phosphorus flux from Tomales Bay sediments, we conclude most release from particles is due to organic matter oxidation that occurs after estuarine deposition. The abiotic, sedimentary flux of dissolved inorganic phosphorus, however, could contribute up to 30% of the observed net export of dissolved inorganic phosphorus from the entire estuary.     

Long-Term Trends in Submersed Aquatic Vegetation (SAV) in Chesapeake Bay, USA, Related to Water Quality

Chesapeake Bay supports a diverse assemblage of marine and freshwater species of submersed aquatic vegetation (SAV) whose broad distributions are generally constrained by salinity. An annual aerial SAV monitoring program and a bi-monthly to monthly water quality monitoring program have been conducted throughout Chesapeake Bay since 1984. We performed an analysis of SAV abundance and up to 22 environmental variables potentially influencing SAV growth and abundance (1984–2006). Historically, SAV abundance has changed dramatically in Chesapeake Bay, and since 1984, when SAV abundance was at historic low levels, SAV has exhibited complex changes including long-term (decadal) increases and decreases, as well as some large, single-year changes. Chesapeake Bay SAV was grouped into three broad-scale community-types based on salinity regime, each with their own distinct group of species, and detailed analyses were conducted on these three community-types as well as on seven distinct case-study areas spanning the three salinity regimes. Different trends in SAV abundance were evident in the different salinity regimes. SAV abundance has (a) continually increased in the low-salinity region; (b) increased initially in the medium-salinity region, followed by fluctuating abundances; and (c) increased initially in the high-salinity region, followed by a subsequent decline. In all areas, consistent negative correlations between measures of SAV abundance and nitrogen loads or concentrations suggest that meadows are responsive to changes in inputs of nitrogen. For smaller case-study areas, different trends in SAV abundance were also noted including correlations to water clarity in high-salinity case-study areas, but nitrogen was highly correlated in all areas. Current maximum SAV coverage for almost all areas remain below restoration targets, indicating that SAV abundance and associated ecosystem services are currently limited by continued poor water quality, and specifically high nutrient concentrations, within Chesapeake Bay. The nutrient reductions noted in some tributaries, which were highly correlated to increases in SAV abundance, suggest management activities have already contributed to SAV increases in some areas, but the strong negative correlation throughout the Chesapeake Bay between nitrogen and SAV abundance also suggests that further nutrient reductions will be necessary for SAV to attain or exceed restoration targets throughout the bay.     

Dissolved and particulate organic carbon in Chesapeake Bay

We measured dissolved and particulate organic carbon (DOC and POC) in samples collected along 13 transects of the salinity gradient of Chesapeake Bay. Riverine DOC and POC end-members averaged 232±19 μM and 151±53 μM, respectively, and coastal DOC and POC end-members averaged 172±19 μM and 43±6 μM, respectively. Within the chlorophyll maximum, POC accumulated to concentrations 50–150 μM above those expected from conservative mixing and it was significantly correlated with chlorophylla, indicating phytoplankton origin. POC accumulated primarily in bottom waters in spring, and primarily in surface waters in summer. Net DOC accumulation (60–120 μM) was observed within and downstream of the chlorophyll maximum, primarily during spring and summer in both surface and bottom waters, and it also appeared to be derived from phytoplankton. In the turbidity maximum, there were also net decreases in chlorophylla (?3 μg l^?1 to ?22 μg l^?1) and POC concentrations (?2 μM to ?89 μM) and transient DOC increases (9–88 μM), primarily in summer. These occurred as freshwater plankton blooms mixed with turbid, low salinity seawater, and we attribute the observed POC and DOC changes to lysis and sedimentation of freshwater plankton. DOC accumulation in both regions of Chesapeake Bay was estimated to be greater than atmospheric or terrestrial organic carbon inputs and was equivalent to ≈10% of estuarine primary production.     

Community Oxygen and Nutrient Fluxes in Seagrass Beds of Florida Bay, USA

We used clear, acrylic chambers to measure in situ community oxygen and nutrient fluxes under day and night conditions in seagrass beds at five sites across Florida Bay five times between September 1997 and March 1999. Underlying sediments are biogenic carbonate with porosities of 0.7–0.9 and with low organic content (<1.6%). The seagrass communities always removed oxygen from the water column during the night and produced oxygen during daylight, and sampling date and site significantly affected both night and daytime oxygen fluxes. Net daily average fluxes of oxygen (?4.9 to 49 mmol m^?2 day^?1) ranged from net autotrophy to heterotrophy across the bay and during the 18-month sampling period. However, the Rabbit Key Basin site, located in the west-central bay and covered with a dense Thalassia testudinum bed, was always autotrophic with net average oxygen production ranging from 4.8 to 49 mmol m^?2 day^?1. In November 1998, three of the five sites were strongly heterotrophic and oxygen production was least at Rabbit, suggesting the possibility of hypoxic conditions in fall. Average ammonium (NH₄) concentrations in the water column varied widely across the bay, ranging from a mean of 6.9 μmol l^?1 at Calusa in the eastern bay to a mean of 0.6 μmol l^?1 at Rabbit Key for the period of study. However, average NH₄ fluxes by site and date (?240 to 110 μmol m^?2 h^?1) were not correlated with water column concentrations and did not vary in a consistent diel, seasonal, or spatial pattern. Concentrations of dissolved organic nitrogen (DON) in the water column, averaged by site (15–25 μmol l^?1), were greater than mean NH₄ concentrations, and the range of day and night DON fluxes (?920 to 1,300 μmol m^?2 h^?1), averaged by site and date, was greater than the range of mean NH₄ fluxes. Average DON fluxes did not vary consistently from day to night, seasonally or spatially. Mean silicate fluxes ranged from ?590 to 860 μmol m^?2 h^?1 across all sites and dates, but mean net daily fluxes were less variable and most of the time contributed small amounts of silicate to the water column. Mean concentrations of filterable reactive phosphorus (FRP) in the water column across the bay were very low (0.021–0.075 μmol l^?1); but site average concentrations of dissolved organic phosphorus (DOP) were higher (0.04–0.15 μmol l^?1) and showed a gradient of increasing concentration from east to west in the bay. A pronounced gradient in average surficial sediment total phosphorus (1.1–12 μmol g DW^?1) along an east-to-west gradient was not reflected in fluxes of phosphorus. FRP fluxes, averaged by site and date, were low (?5.2 to 52 μmol m^?2 h^?1), highly variable, and did not vary consistently from day to night or across season or location. Mean DOP fluxes varied over a smaller range (?8.7 to 7.4 μmol m^?2 h^?1), but also showed no consistent spatial or temporal patterns. These small DOP fluxes were in sharp contrast to the predominately organic phosphorus pool in surficial sediments (site means?=?0.66–7.4 μmol g DW^?1). Significant correlations of nutrient fluxes with parameters related to seagrass abundance suggest that the seagrass community may play a major role in nutrient recycling. Integrated means of net daily fluxes over the area of Florida Bay, though highly variable, suggest that seagrass communities might be a source of DOP and NH₄ to Florida Bay and might remove small amounts of FRP and potentially large amounts of DON from the waters of the bay.     

The response of fishes to submerged aquatic vegetation complexity in two ecoregions of the mid-Atlantic bight: Buzzards Bay and Chesapeake Bay

Estuarine seagrass ecosystems provide important habitat for fish and invertebrates and changes in these systems may alter their ability to support fish. The response of fish assemblages to alteration of eelgrass (Zostera marina) ecosystems in two ecoregions of the Mid-Atlantic Bight (Buzzards Bay and Chesapeake Bay) was evaluated by sampling historical eelgrass sites that currently span a broad range of stress and habitat quality. In two widely separated ecoregions with very different fish faunas, degradation and loss of submerged aquatic vegetation (SAV) habitat has lead to declines in fish standing stock and species richness. The abundance, biomass, and species richness of the fish assemblage were significantly higher at sites that have high levels of eelgrass habitat complexity (biomass >100 wet g m^?2; density <100 shotts m^?2) compared to sites that have reduced eelgrass (biomass <100 wet g m^?2; density <100 shoots m^?2) or that have completely lost eelgrass. Abundance, biomass, and species richness at reduced eelgrass complexity sites also were more variable than at high eelgrass complexity habitats. Low SAV complexity sites had higher proportions of pelagic species that are not dependent on benthic habitat structure for feeding or refuge. Most species had greater abundance and were found more frequently at sites that have eelgrass. The replacement of SAV habitats by benthic macroalgae, which occurred in Buzzards Bay but not Chesapeake Bay, did not provide an equivalent habitat to seagrass. Nutrient enrichment-related degradation of eelgrass habitat has diminished the overall capacity of estuaries to support fish populations.     

Scales of nutrient-limited phytoplankton productivity in Chesapeake Bay

The scales on which phytoplankton biomass vary in response to variable nutrient inputs depend on the nutrient status of the plankton community and on the capacity of consumers to respond to increases in phytoplankton productivity. Overenrichment and associated declines in water quality occur when phytoplankton growth rate becomes nutrient-saturated, the production and consumption of phytoplankton biomass become uncoupled in time and space, and phytoplankton biomass becomes high and varies on scales longer than phytoplankton generation times. In Chesapeake Bay, phytoplankton growth rates appear to be limited by dissolved inorganic phosphorus (DIP) during spring when biomass reaches its annual maximum and by dissolved inorganic nitrogen (DIN) during summer when phytoplankton growth rates are highest. However, despite high inputs of DIN and dissolved silicate (DSi) relative to DIP (molar ratios of N∶P and Si∶P>100), seasonal accumulations of phytoplankton biomass within the salt-intruded-reach of the bay appear to be limited by riverine DIN supply while the magnitude of the spring diatom bloom is governed by DSi supply. Seasonal imbalances between biomass production and consumption lead to massive accumulations of phytoplankton biomass (often>1,000 mg Chl-a m^?2) during spring, to spring-summer oxygen depletion (summer bottom water <20% saturation), and to exceptionally high levels of annual phytoplankton production (>400 g m^?2 yr^?1). Nitrogen-dependent seasonal accumulations of phytoplankton biomass and annual production occur as a consequence of differences in the rates and pathways of nitrogen and phosphorus cycling within the bay and underscore the importance of controlling nitrogen inputs to the mesohaline and lower reaches of the bay.     

Effects of low dissolved oxygen events on the macrobenthos of the lower Chesapeake Bay

The effects of low dissolved oxygen or hypoxia (<2 mg l^?1) on macrobenthic infaunal community structure and composition in the lower Chesapeake Bay and its major tributaries, the Rappahannock, York, and James rivers are reported. Macrobenthic communities at hypoxia-affected stations were characterized by lower species diversity, lower biomass, a lower proportion of deep-dwelling biomass (deeper than 5 cm in the sediment), and changes in community composition. Higher dominance in density and biomass of opportunistic species (e.g., euryhaline annelids) and lower dominance of equilibrium species (e.g., long-lived bivalves and maldanid polychaetes) were observed at hypoxia-affected stations. Hypoxia-affected macrobenthic communities were found in the polyhaline deep western channel of the bay mainstem north of the Rappahannock River and in the mesohaline region of the lower Rappahannock River. No hypoxic effects on the infaunal macrobenthos were found in the York River, James River, or other deep-water channels of the lower Chesapeake Bay.     

Partial Migration Across Populations of White Perch (<Emphasis Type="Italic">Morone americana</Emphasis>): A Flexible Life History Strategy in a Variable Estuarine Environment

We evaluated the prevalence of partial migration, coexisting resident and migratory life history types, within six white perch (Morone americana) populations in sub-estuaries (Upper Bay, and Potomac, Choptank, Nanticoke, James, and York Rivers) of the Chesapeake Bay. Otolith stable isotope (δ¹⁸O) values were used to resolve fish habitat use along an estuarine salinity gradient and define resident or migratory behavior. The majority of adults within Upper Bay and Potomac River populations were resident, whereas individuals from the Choptank, Nanticoke, James, and York Rivers were predominantly migratory. Beyond population differences, large interannual variability in life history types was observed, likely due to differences in estuarine conditions that influence growth rate of individuals (e.g., temperature, zooplankton density). Because we observed partial migration in all study populations, we suggest that this trait is characteristic of this species, permitting plastic responses to variation in the estuarine environment.     

Sediment-water oxygen and nutrient exchanges along the longitudinal axis of Chesapeake Bay: Seasonal patterns,controlling factors and ecological significance

Sediment-water oxygen and nutrient (NH₄ ⁺, NO₃ ^?+NO₂ ^?, DON, PO₄ ^3?, and DSi) fluxes were measured in three distinct regions of Chesapeake Bay at monthly intervals during 1 yr and for portions of several additional years. Examination of these data revealed strong spatial and temporal patterns. Most fluxes were greatest in the central bay (station MB), moderate in the high salinity lower bay (station SB) and reduced in the oligohaline upper bay (station NB). Sediment oxygen consumption (SOC) rates generally increased with increasing temperature until bottom water concentrations of dissolved oxygen (DO) fell below 2.5 mg l^?1, apparently limiting SOC rates. Fluxes of NH₄ ⁺ were elevated at temperatures >15°C and, when coupled with low bottom water DO concentrations (<5 mg l^?1), very large releases (>500 μmol N m^?2 h^?1) were observed. Nitrate + nitrite (NO₃ ^?+NO₂ ^?) exchanges were directed into sediments in areas where bottom water NO₃ ^?+NO₂ ^? concentrations were high (>18 μM N); sediment efflux of NO₃ ^?+NO₂ ^? occurred only in areas where bottom water NO₃ ^?+NO₂ ^? concentrations were relatively low (<11 μM N) and bottom waters well oxygenated. Phosphate fluxes were small except in areas of hypoxic and anoxic bottom waters; in those cases releases were high (50–150 μmol P m^?2 h^?1) but of short duration (2 mo). Dissolved silicate (DSi) fluxes were directed out of the sediments at all stations and appeared to be proportional to primary production in overlying waters. Dissolved organic nitrogen (DON) was released from the sediments at stations NB and SB and taken up by the sediments at station MB in summer months; DON fluxes were either small or noninterpretable during cooler months of the year. It appears that the amount and quality of organic matter reaching the sediments is of primary importance in determining the spatial variability and interannual differences in sediment nutrient fluxes along the axis of the bay. Surficial sediment chlorophyll-a, used as an indicator of labile sediment organic matter, was highly correlated with NH₄ ^?, PO₄ ^3?, and DSi fluxes but only after a temporal lag of about 1 mo was added between deposition events and sediment nutrient releases. Sediment O:N flux ratios indicated that substantial sediment nitrification-denitrification probably occurred at all sites during winter-spring but not summer-fall; N:P flux ratios were high in spring but much less than expected during summer, particularly at hypoxic and anoxic sites. Finally, a comparison of seasonal N and P demand by phytoplankton with sediment nutrient releases indicated that the sediments provide a substantial fraction of nutrients required by phytoplankton in summer, but not winter, especially in the mid bay region.     

Seasonal and long-term trends in the water quality of Florida Bay (1989–1997)

Analysis of 6 yr of monthly water quality data was performed on three distinct zones of Florida Bay: the eastern bay, central bay, and western bay. Each zone was analyzed for trends at intra-annual (seasonal), interannual (oscillation), and long-term (monotonic) scales. the variables TON, TOC, temperature, and TN∶TP ratio had seasonal maxima in the summer rainy season; APA and Chla, indicators of the size and activity of the microplankton tended to have maxima in the fall. In contrast, NO₃ ⁻, NO₂ ⁻, NH₄ ⁺, turbidity, and DO_sat, were highest in the winter dry season. There were large changes in some of the water quality variables of Florida Bay over the study period. Salinity and TP concentrations declined baywide while turbidity increased dramatically. Salinity declined in the eastern, central, and western Florida Bay by 13.6‰, 11.6‰, and 5.6‰, respectively. Some of the decrease in the eastern bay could be accounted for by increased freshwater flows from the Everglades. In contrast to most other estuarine systems, increased runoff may have been partially responsible for the decrease in TP concentrations as input concentrations were 0.3–0.5 μM. Turbidity in the eastern bay increased twofold from 1991 to 1996, while in the central and western bays it increased by factors of 20 and 4, respectively. Chla concentrations were particularly dynamic and spatially heterogeneous. In the eastern bay, which makes up roughly half of the surface area of Florida Bay, Chla declined by 0.9 μg l⁻¹ (63%). The hydrographically isolated central bay zone underwent a fivefold increase in phytoplankton biomass from 1989 to 1994, then rapidly declined to previous levels by 1996. In western Florida Bay there was a significant increase in Chla, yet median concentrations of Chla in the water column remained modest (∼2 μg l⁻¹) by most estuarine standards. Only in the central bay did the DIN pool increase substantially (threefold to sixfold). Notably, these changes in turbidity and phytoplankton biomass occurred after the poorly-understood seagrass die-off in 1987. It is likely the death and decomposition of large amounts of seagrass biomass can at least partially explain some of the changes in water quality of Florida Bay, but the connections are temporally disjoint and the process indirect and not well understood.     

Nutrient inputs to the Choptank River estuary: Implications for watershed management

Degraded water quality due to water column availability of nitrogen and phosphorus to algal species has been identified as the primary cause of the decline of submersed aquatic vegetation in Chesapeake Bay and its subestuaries. Determining the relative impacts of various nutrient delivery pathways on estuarine water quality is critical for developing effective strategies for reducing anthropogenic nutrient inputs to estuarine waters. This study investigated temporal and spatial patterns of nutrient inputs along an 80-km transect in the Choptank River, a coastal plain tributary and subestuary of Chesapeake Bay, from 1986 through 1991. The study period encompassed a wide range in freshwater discharge conditions that resulted in major changes in estuarine water quality. Watershed nitrogen loads to the Choptank River estuary are dominated by diffuse-source inputs, and are highly correlated to freshwater discharge volume. in years of below-average freshwater discharge, reduced nitrogen availability results in improved water quality throughout most of the Choptank River. Diffuse-source inputs are highly enriched in nitrogen relative to phosphorus, but point-source inputs of phosphorus from sewage treatment plants in the upper estuary reduce this imbalance, particularly during summer periods of low freshwater discharge. Diffuse-source nitrogen inputs result primarily from the discharge of groundwater contaminated by nitrate. Contamination is attributable to agricultural practices in the drainage basin where agricultural land use predominates. Groundwater discharge provides base flow to perennial streams in the upper regions of the watershed and seeps directly into tidal waters. Diffuse-source phosphorus inputs are highly episodic, occurring primarily via overland flow during storm events. Major reductions in diffuse-source nitrogen inputs under current landuse conditions will require modification of agricultural practices in the drainage basin to reduce entry rates of nitrate into shallow groundwater. Rates of subsurface nitrate delivery to tidal waters are generally lower from poorly-drained versus well-drained regions of the watershed, suggesting greater potential reductions of diffuse-source nitrogen loads per unit effort in the well-drained region of the watershed. Reductions in diffuse-source phosphorus loads will require long-term management of phosphorus levels in upper soil horizons. *** DIRECT SUPPORT *** A01BY074 00021     

Habitat requirements for submerged aquatic vegetation in Chesapeake Bay: Water quality, light regime, and physical-chemical factors

We developed an algorithm for calculating habitat suitability for seagrasses and related submerged aquatic vegetation (SAV) at coastal sites where monitoring data are available for five water quality variables that govern light availability at the leaf surface. We developed independent estimates of the minimum light required for SAV survival both as a percentage of surface light passing though the water column to the depth of SAV growth (PLW _min) and as a percentage of light reaching reaching leaves through the epiphyte layer (PLL _min). Value were computed by applying, as inputs to this algorithm, statistically dervived values for water quality variables that correspond to thresholds for SAV presence in Chesapeake Bay. These estimates ofPLW _min andPLL _min compared well with the values established from a literature review. Calcultations account for tidal range, and total light attenuation is partitioned into water column and epiphyte contributions. Water column attenuation is further partitioned into effects of chlorophylla (chla), total suspended solids (TSS) and other substances. We used this algorithm to predict potential SAV presence throughout the Bay where calculated light available at plant leaves exceededPLL _min. Predictions closely matched results of aerial photographic monitoring surveys of SAV distribution. Correspondence between predictions and observations was particularly strong in the mesohaline and polythaline regions, which contain 75–80% of all potential SAV sites in this estuary. The method also allows for independent assessment of effects of physical and chemical factors other than light in limiting SAV growth and survival. Although this algorithm was developed with data from Chesapeake Bay, its general structure allows it to be calibrated and used as a quantitative tool for applying water quality data to define suitability of specific sites as habitats for SAV survival in diverse coastal environments worldwide.     

Sediment-water oxygen and nutrient fluxes in a river-dominated estuary

Sediment oxygen uptake and net sediment-water fluxes of dissolved inorganic and organic nitrogen and phosphorus were measured at two sites in Fourleague Bay, Louisiana, from August 1981, through May 1982. This estuary is an extension of Atchafalaya Bay which receives high discharge and nutrient loading from the Atchafalaya River. Sediment O₂ uptake averaged 49 mg m^?2 h^?1. On the average, ammonium (NH₄ ⁺) was released from the sediments (mean flux =+129 μmol m^?2 h^?1), and NO₃ ^? was taken up (mean flux =?19 μmol m^?2h^?1). However, very different NO₃ ^? fluxes were observed at the two sites, with sediment uptake at the upper, river-influenced, high NO₃ ^? site (mean flux =?112 μmol m^?2 h^?1) and release at the lower, marine-influenced low NO₃ ^? site (mean flux =+79 μmol m^?2 h^?1). PO₄ ^3? fluxes were low and often negative (mean flux =?8 μmol m^?2 h^?1), while dissolved organic phosphorus fluxes were high and positive (mean flux =+124 μmol m^?2 h^?1). Dissolved organic nitrogen fluxes varied greatly, ranging from a mean of +305 μmol m^?2 h^?1 at the lower bay, to ?710 μmol m^?2 h^?1 at the upper bay. Total dissolved nitrogen and phosphorus fluxes indicated the sediments were a nitrogen (mean flux =+543 μmol m^?2 h^?1) and phosphorus source (mean flux =+30 μmol m^?2 h^?1) at the lower bay, and a nitrogen sink (mean flux =?553 μmol m^?2 h^?1) and phosphorus source (mean flux =+17 μmol m^?2 h^?1) in the upper bay. Mean annual O∶N ration of the positive inorganic sediment fluxes were 27∶1 at the upper bay and 18∶1 at the lower bay. Based on these data we hypothesize that nitrification and denitrification are important sediment processes in the upper bay. We further hypothesize that Atchafalaya River discharge affects sediment-water fluxes through seasonally high nutrient loading which leads to net nutrient uptake by sediments in the upper bay and release in the lower bay, where there is less river influnces.     

Measurement of seasonal variability of hydro-environmental characteristics of Kuwait Bay

To fill in the large existing data gap, this study presents results of a comprehensive data set from Kuwait Bay (KB), showing the horizontal and vertical distribution of its prominent hydrodynamic variables (i.e., water temperature, seawater salinity, seawater density) and water quality variables (i.e., chlorophyll-a concentration, turbidity, dissolved oxygen (DO) concentration, DO saturation, apparent oxygen utilization, photosynthetic active radiation). Field measurements were carried out between 11 September 2014 and 17 August 2015 covering number of monitoring stations in the entire bay. The results revealed significant seasonal variations and apparent three-dimensional features of the measured variables exemplifying the necessity of not considering the bay as a well-mixed water body in the future oceanographic studies anytime of the year. However, well-mixed conditions (with the Brunt-Vaisala frequency of about 0.0002 s^?1) were existent only in the winter. Bay’s water column began stratifying in late spring, and these were significantly intensified (with the Brunt-Vaisala frequency of about 0.0008 s^?1) during the summer and early autumn. The stratification, together with the increase oxygen demand for decomposition processes and decrease in DO solubility in summer, led to the formation of a lower DO water mass (daytime DO concentration <4.2 mg l^?1) at the lower layers. Results also suggested that the water of the KB is more transparent (indicated by lower turbidity) compared to the adjacent sea water. Measurement of light intensity along the water column indicated that the light extincts rapidly (i.e., the light reduced to approximately 10 % of the surface values at water depth of 2–6 m) in KB and many times absent at the water near the seabed. This study also suggested that the KB can be classified at a year-round negative, hypersaline, inverse, and hyperpycnal estuary.     

Multi-decade Responses of a Tidal Creek System to Nutrient Load Reductions: Mattawoman Creek,Maryland USA

We developed a synthesis using diverse monitoring and modeling data for Mattawoman Creek, Maryland, USA to examine responses of this tidal freshwater tributary of the Potomac River estuary to a sharp reduction in point-source nutrient loading rate. Oligotrophication of these systems is not well understood; questions concerning recovery pathways, threshold responses, and lag times remain to be clarified and eventually generalized for application to other systems. Prior to load reductions Mattawoman Creek was eutrophic with poor water clarity (Secchi depth <0.5 m), no submerged aquatic vegetation (SAV), and large algal stocks (50–100 μg L^?1 chlorophyll-a). A substantial modification to a wastewater treatment plant reduced annual average nitrogen (N) loads from 30 to 12 g N m^?2 year^?1 and phosphorus (P) loads from 3.7 to 1.6 g P m^?2 year^?1. Load reductions for both N and P were initiated in 1991 and completed by 1995. There was no trend in diffuse N and P loads between 1985 and 2010. Following nutrient load reduction, NO₂?+?NO₃ and chlorophyll-a decreased and Secchi depth and SAV coverage and density increased with initial response lag times of one, four, three, one, and one year, respectively. A preliminary N budget was developed and indicated the following: diffuse sources currently dominate N inputs, estimates of long-term burial and denitrification were not large enough to balance the budget, sediment recycling of NH₄ was the single largest term in the budget, SAV uptake of N from sediments and water provided a modest seasonal-scale N sink, and the creek system acted as an N sink for imported Potomac River nitrogen. Finally, using a comparative approach utilizing data from other shallow, low-salinity Chesapeake Bay ecosystems, strong relationships were found between N loading and algal biomass and between algal biomass and water clarity, two key water quality variables used as indices of restoration in Chesapeake Bay.