Ecology of rocky reef fish of northeastern New Zealand: 50 years on

Abstract

This review examines the history and current understanding of the ecology of rocky reef fishes in northeastern New Zealand, marking the fiftieth anniversary of the Leigh Marine Laboratory. The cumulative number of publications increased steadily to c. 180 by 2012. Most attention has been on the snapper (Pagrus auratus, f. Sparidae), the largest in size and economically most important species, and on triplefins (Tripterygiidae), the smallest in size and most diverse family. A strong quantitative school emerged in the 1980s, a period when there was little research on temperate reef fishes elsewhere. A ‘bottom-up’ view of the effects of habitat structure on fish emerged, identifying the key roles of depth, topography and macroalgae. By 2000, attention shifted to using marine reserves as laboratories for ecological research. A ‘top-down’ view of fish as predators emerged, documenting cascading effects on prey communities and habitats. The two different viewpoints have not yet been integrated. Research gaps, including population connectivity and climate change, represent major challenges for the next 50 years.     

来源于印度洋深海区的烟曲霉次生代谢产物的研究

为了研究烟曲霉次生代谢产物,我们采用硅胶柱层析、sephadex LH-20凝胶柱层析、半制备液相色谱等分离方法对来源于印度洋深海区的烟曲霉(Aspergillus fumigatus)的乙醇提取液进行系统的次生代谢产物分离,根据所分离得到的化合物的理化性质和波谱数据确定化合物的结构。共分离鉴定了15个化合物,其中11个二酮哌嗪类生物碱(diketopiperazine),4个喹唑啉类衍生物(fumiquinazoline),分别为:fumitremorgin B(1),13-oxofumitremorgin B(2),fumitremorgin C(3),12-hydroxyfumitremorgin(13),3-hydroxyfumiquinazoline A(14)和fumiquinazoline E(15)。分离得到的15个化合物,丰富了烟曲霉次生代谢产物的类型,为烟曲霉的开发利用提供了化学研究基础。     

Latitudinal variation in the aerial/aquatic ratio of oxygen consumption of a supratidal high rocky‐shore crab

The colonisation of the terrestrial environment by crustaceans is more apparent in tropical latitudes because of the high diversity of semi‐terrestrial and terrestrial crabs. However, in temperate regions there are also great numbers of crustaceans that inhabit ecological niches at the water–air interface. Grapsidae crabs (Decopoda) are especially important in studies of water‐to‐land transition as the family contains species occupying the intertidal and adjacent regions. A way to evaluate the ability of intertidal invertebrates to breathe air is to measure the aerial/aquatic oxygen consumption ratio. The objective of this study was to test the effect of thermal variation on the aquatic and aerial metabolism. We selected as study model the decopoda crab Cyclograpsus cinereus Dana and utilised five populations of the species spread over 2000 km along the Chilean coast. To determine the compensation capacity in respiration with respect to latitude, we evaluated metabolic rate at the same temperature in a common garden design in the laboratory, to examine the extent to which variation in crab physiology is environmentally determined. Whereas in our study, m_b (body mass) varied significantly with latitude, the difference in mass‐independent metabolism both in air and water persisted, indicating that observed differences in MR (Metabolic Rate) were not an effect of differences in body size. We demonstrated that C. cinereus is able to breath oxygen from air and water as expected for an amphibious crab. Almost all the studied populations of C. cinereus show a aerial/aquatic metabolism ratio near 1. The pattern found indicates an increase in metabolic rate, both aerial and aquatic, in low latitudes and therefore does not support the latitudinal compensation hypothesis for temperate habitats. Finally, these kinds of studies are required to make the necessary link between ecological physiology and macroecology and to help develop a global understanding of organismal function in marine systems.     

Integrated Assessment of Shoreline Change along the Calypsostranda (Svalbard) from Remote Sensing,Field Survey and GIS

Abstract

Arctic coasts are sensitive indicators of polar environment change. Here we present the results of a study that examines the coastal morphodynamics of the Calypsostranda coastline in Svalbard (High Arctic) between 2007 to 2017 and compare these short-term changes to previous studies for the period 1936–2007. During the 2007–2017 study period, the study area lost ca. 10,710 m², at a mean Net Shoreline Movement (NSM) of ?1.86 m and End Point Rate (EPR) ?0.19 m/yr. Erosion also dominated between 1936–2007, ?28,800 m², at a mean NSM of ?4.99 m and EPR ?0.07 m/yr. Using EPR and Linear Regression Rate (LRR) parameters, we divide the Calypsostranda coastline into eroding and aggrading zones. The overall pattern of coastline change during the two study periods is similar, but the rate of erosion is higher in the recent interval, reflecting stronger climate-driven processes. Recent climate warming in the study area has been accompanied by an intensification of extreme events such as storms (e.g. ocean swell). The situation is becoming more pronounced due to the progressively reduced period of winter shore ice. Depending on the anemometric conditions, the Calypsostranda coast is modified by wind waves, and consequently longshore currents and associated sediment movement.     

Advances in mollusc sclerochronology and sclerochemistry: tools for understanding climate and environment

This Special Issue of Geo-Marine Letters compiles papers on marine, estuarine and freshwater mollusc shells as recorders of environmental and climatic conditions. Considering that many past studies have differentiated geochemical investigations from sclerochronological investigations, we propose that the sub-discipline term “sclerochemistry” be used when geochemical investigations are undertaken. This issue starts with two review papers that discuss the importance of physiology or vital effects on both sclerochronology and sclerochemistry. Several sclerochemical calibration studies on modern specimens of both bivalves and gastropods are presented (including δ¹⁸O, Mg/Ca, Sr/Ca and Ba/Ca), which illustrate the usefulness and difficulties associated with using these proxies. Studies on fossil mollusc shells are also provided, with one study that uses Pliocene scallop shells to understand past ocean circulation and another that addresses the problem of diagenesis. Finally, a sclerochronological study of crystal prism width across the shell is presented. This Special Issue demonstrates that many elemental and isotopic proxies contained in mollusc shells are complex. In spite of these complexities, environmental and climatic conditions can be extracted for use in palaeoclimatic and palaeoenvironmental research.     

Paradigms for planktonic assemblages: 50 years of contributions from the Leigh Marine Laboratory,Northland, New Zealand

Abstract

Plankton includes the primary producers and consumers that are critical for healthy ecosystem function in the marine realm. My objective was to identify the major contributions of the Leigh Marine Laboratory to our broader understanding of planktonic assemblages. Significant contributions were made prior to 1990 on the ecology of larval fishes. From the 1990s the focus changed to the sensory biology of larval invertebrates and fishes, with a strong emphasis given to the role of reef sound in attracting potential settlers. Both early and post 1980s research has been highly influential in a paradigm shift away from passively drifting larvae that have little control over their fate. Important contributions have also been made on the dynamics of nutrient–phytoplankton interactions, larval development and aquaculture. Opportunities abound for future research on the dynamics of planktonic assemblages in shelf waters and in changing seas.     

Seasonal differences in the physiology of Carcinus maenas (Crustacea: Decapoda) from estuaries with varying levels of anthropogenic contamination

This study reports the seasonal variability in aspects of the physiology of the shore crab Carcinus maenas from three estuaries in South-west England, each with varying anthropogenic inputs: Avon Estuary (‘relatively low’ impact), Yealm Estuary (‘intermediate’ impact) and Plym Estuary (‘relatively high’ impact). Crabs collected over 12 months from the Avon had a significantly ‘lower’ physiological condition in winter and spring compared to summer and autumn; in particular, haemocyte phagocytic capability (a general indicator of immune function) was significantly higher in winter and spring compared to summer and autumn, and total haemolymph antioxidant status (an indicator of oxidative stress) was significantly lower in winter compared to the remainder of the year. Potentially, shore crabs may be more susceptible to the effects of contaminant exposure, such as increased immunotoxicity (thus, reduction of immune function) and/or oxyradicals (or reactive oxygen species) exposure) especially in seasons of increased susceptibility i.e. summer/autumn (lower phagocytic capability) and winter (lowest antioxidant function). As the Avon was taken to represent the ‘reference’ site, this pattern is considered to reflect the ‘normal’ seasonal variability in shore crab physiology. Shore crab physiological condition from the ‘relatively high’ impact estuary (Plym) revealed increased cellular viability and antioxidant status in autumn and winter compared with that of the ‘standard’ pattern (Avon) However, crabs from the intermediate impact estuary (Yealm) only demonstrated significant physiological differences in summer as shown by a lower cellular viability. All crabs had been exposed to PAHs (confirmed by the presence of PAH metabolites in their urine) which may account for the observed differences in shore crab physiology. In conclusion, to aid understanding of the potential contaminant impacts on biota it is imperative that the ’normal’ seasonal variability of physiological condition be established. Biological effects-based monitoring studies should therefore be employed seasonally to potentially highlight ‘windows of sensitivity’ to contaminant impact.     

Geotechnical Investigation of the Titanic Wreck Site

Abstract

Recent marine forensic investigations have largely unravelled the sequence of events concerning the sinking of the R.M.S. Titanic and its descent through nearly 3800 m of water to the seafloor on the morning of 15 April 1912. In particular, the velocity and attitude of the Titanic's bow section (at present lying upright, reasonably intact, and embedded by ～12 m at the prow) as it hit the bottom are of general interest to marine accident investigators. During the 1998 Titanic Science Expedition, a single sediment sample was retrieved from the seafloor (depth 20–30 cm) near the wreck by the deep water submersible, Nautile. Published geological studies suggest the seafloor in this area has remained largely undisturbed since 1912. Geotechnical analysis of the sediment sample reveals that the impact was probably a substantially undrained event and that the characteristic undrained shear strength of the sediment is ～25kPa within 10–16 m below the seafloor. A simple analytical model was used to calculate the embedment of a cuboid with dimensions and mass of the water-filled bow as a function of impact velocity, impact angle, and the undrained shear strength of the sediment. The results indicate the impossibility of a steep angle of impact and fast velocity. The most likely scenario is an impact velocity of 5–10 m/s at a fairly shallow angle (<40°), which corroborates the results of hydrodynamic investigations.     

Modelling mussel growth in ecosystems with low suspended matter loads using a Dynamic Energy Budget approach

The environmental and the economic importance of shellfish stimulated a great deal of studies on their physiology over the last decades, with many attempts to model their growth. The first models developed to simulate bivalve growth were predominantly based on the Scope For Growth (SFG) paradigm. In the last years there has been a shift towards the Dynamic Energy Budget (DEB) paradigm. The general objective of this work is contributing to the evaluation of different approaches to simulate bivalve growth in low seston waters by: (i) implementing a model to simulate mussel growth in low suspended matter ecosystems based on the DEB theory (Kooijman, S.A.L.M., 2000. Dynamic and energy mass budgets in biological systems, Cambridge University Press); (ii) comparing and discussing different approaches to simulate feeding processes, in the light of recently published works both on experimental physiology and physiology modeling; (iii) comparing and discussing results obtained with a model based on EMMY (Scholten and Smaal, 1998). The model implemented allowed to successfully simulate mussel feeding and shell length growth in two different Galician Rias. Obtained results together with literature data suggest that modeling of bivalve feeding should incorporate physiologic feed-backs related with food digestibility. In spite of considerable advances in bivalve modeling a number of issues is yet to be resolved, with emphasis on the way food sources are represented and feeding processes formulated.     

Classification of marine bioregions on the east coast of South Africa

Marine bioregional planning requires a meaningful classification and spatial delineation of the ocean environment using biological and physical characteristics. The relative inaccessibility of much of the ocean and the paucity of directly measured data spanning entire planning regions mean that surrogate data, such as satellite imagery, are frequently used to develop spatial classifications. However, due to a lack of appropriate biological data, these classifications often rely on abiotic variables, which act as surrogates for biodiversity. The aim of this study was to produce a fine-scale bioregional classification, using multivariate clustering, for the inshore and offshore marine environment off the east coast of South Africa, adjacent to the province of KwaZulu-Natal and out to the boundary of the exclusive economic zone (EEZ), 200 nautical miles offshore. We used remotely sensed data of sea surface temperature, chlorophyll a and turbidity, together with interpolated bathymetry and continental-slope data, as well as additional inshore data on sediments, seabed oxygen and bottom temperature. A multivariate k-means analysis was used to produce a fine-scale marine bioregionalisation, with three bioregions subdivided into 12 biozones. The offshore classification was primarily a pelagic bioregionalisation, whereas the inshore classification (on the continental shelf) was a coupled benthopelagic bioregionalisation, owing to the availability of benthic data for this area. The resulting classification was used as a base layer for a systematic conservation plan developed for the province, and provided the methods for subsequent planning conducted for the entire South African EEZ. Validation of the classification is currently being conducted in marine research programmes that are sampling benthic biota and habitats in a sampling design stratified according to the biozones delineated in this study.     

The bacterial diversity in surface sediment from the South China Sea

16S rDNA sequencing results from this study and literatures demonstrate that sediment bacteria in the South China Sea (SCS) were very diverse,which contained 22 of the 24 phyla of bacteria investigated from marine sediment,however,it was very imbalance among stations.So bacterial diversity from 15 samples which covered a wide range of sediment types from 20 to 3 888 m in depth was studied in DGGE (denature gradient gel electrophoresis) in this paper.The DGGE results indicate that both sediment bacterial diversity and diversity difference among stations were significant.Thirty representative and differential fingerprints among samples were recovered and sequenced,phylogenetic analysis indicates that they may belong to Proteobacteria (α-,β-,γ-,δ-,ε-),Planctomycetes,Firmicutes,Chloroflexi,Acidobacteria,Actinobacteria,Nitrospirae,Gemmatimonadetes,candidate division WS3 and so on,of which,Gemmatimonadetes and candidate division WS3 bacteria were first detected in SCS sediment.This study also shows that bacterial diversity analysis based on DGGE was more potential than traditional 16S rDNA clone library in multiple sample analysis.     

Mafic-hosted seafloor sulfide mineralization at the margin of a non-transform discontinuity on the southern mid-Atlantic ridge

Abstract

Mineralogical, geochemical and S-isotopic studies were carried out on seafloor massive sulfides (SMS) and hydrothermally altered rocks from the mafic-hosted TaiJi field (including TaiJi-1 and TaiJi-2 sites), which is located on the margin of a nontransform discontinuity (NTD) on the Southern Mid-Atlantic Ridge (SMAR). The main hydrothermal precipitates of TaiJi-1 were massive sulfides, while TaiJi-2 produced a large amount of semi-massive sulfides. Significant rock alteration is an important feature of this field, and large amounts of clay minerals (chlorite) occurred in the semi-massive sulfides. Geochemically, notable negative correlations were identified between rock forming elements (Mg) and major hydrothermal metal elements such as Zn?+?Cu and Co in semisulfides. Such mineralogical and geochemical characteristics, together with low Co/Ni ratio (similar to the surrounding rocks) of the semi-massive sulfides and the unique REE features of some altered rocks, tell us that the prominent mineralization mechanism for these semi-massive sulfides was probably related to rock mineralization. Thus, TaiJi-2 appears to differ significantly from the TaiJi-1 in terms of sulfide mineralization mechanism. Moreover, the TaiJi sulfides are remarkable for large δ³⁴S variation (7.2–15.3%). We suggest that seawater corrosion after sulfides precipitation were responsible for ³⁴S enrichment in sulfides. Furthermore, our work sheds some light on the comparison between TaiJi and other NTD-related fields along the Mid-Atlantic Ridge. We argue that rock mineralization may represent an important mineralization type in NTDs.     

Phylogeography of New Zealand's coastal benthos

During the past 30 years, 42 molecular studies have been undertaken in New Zealand to examine the phylogeography of coastal benthic invertebrates and plants. Here, we identify generalities and/or patterns that have emerged from this research and consider the processes implicated in generating genetic structure within populations. Studies have used various molecular markers and examined taxonomic groups with a range of life histories and dispersal strategies. Genetic disjunctions have been identified at multiple locations, with the most frequently observed division occurring between northern and southern populations at the top of the South Island. Although upwelling has been implicated as a cause of this disjunction, oceanographic evidence is lacking and alternative hypotheses exist. A significant negative correlation between larval duration and genetic differentiation (r² = 0.39, P < 0.001, n = 29) across all studies suggests that larval duration might be used as a proxy for dispersal potential. However, among taxa with short larval durations (<10 days) there was greater variability in genetic differentiation than among taxa with longer pelagic periods. This variability implies that when larval duration is short, other factors may determine dispersal and connectivity among populations. Although there has been little congruence between the phylogeographic data and recognised biogeographic regions, recent research has resolved population subdivision at finer spatial scales corresponding more closely with existing biogeographic classifications. The use of fast‐evolving and ecologically significant molecular markers in hypothesis‐driven research could further improve our ability to detect population subdivision and identify the processes structuring marine ecosystems.     

Retrospective satellite ocean color analysis of purposeful and natural ocean iron fertilization

Significant effort has been invested in understanding the role of iron in marine ecosystems over the past few decades. What began as shipboard amendment experiments quickly grew into a succession of in situ, mesoscale ocean iron fertilization (OIF) experiments carried out in all three high nutrient low chlorophyll (HNLC) regions of the world ocean. Dedicated process studies have also looked at regions of the ocean that are seasonally exposed to iron-replete conditions as natural OIF experiments. However, one problem common to many OIF experiments is determination of biological response beyond the duration of the experiment (typically<1 month). Satellite-derived products have been used to address this shortcoming with some success, but thus far, have been limited snapshots of a single parameter, chlorophyll. Here, we investigate phytoplankton responses to OIF in both purposeful and naturally iron enriched systems using estimates of chlorophyll (Chl), phytoplankton carbon biomass (C_phyto), their ratio (Chl:C_phyto) and two fluorescence indices, fluorescence per unit chlorophyll (FLH:Chl) and the chlorophyll fluorescence efficiency (ϕ_f). These quantities allow partitioning of the biological response to OIF into that due to changes in biomass and that due to phytoplankton physiology. We find that relative increases in Chl (∼10–20x) following OIF far exceed increases in C_phyto (<4–5x), suggesting that a significant fraction of the observed Chl increase is associated with physiological adjustment to increased growth rates, photoacclimation, and floristic shifts in the phytoplankton community. Further, a consistent pattern of decreased satellite fluorescence efficiency (FLH:Chl or ϕ_f) following OIF is observed that is in agreement with current understanding of phytoplankton physiological responses to relief from iron stress. The current study extends our ability to retrieve phytoplankton physiology from space-based sensors, strengthens the link between satellite fluorescence and iron availability, and shows that satellite ocean color analyses provide a unique tool for monitoring OIF experiments.     

Equivalent void ratio controlling the mechanical properties of cementitious material-clay mixtures with high water content

Abstract

This research develops a parameter defined as the equivalent void ratio, e?_st, which is able to accurately describe the dependence of the mechanical properties of cementitious material-clay mixtures on the influencing parameters, i.e., the mixing proportion, curing time, and initial state of the mixture, for different types of cementitious materials based on the results of unconfined compression, oedometer, and triaxial tests. Besides Portland cement, cementitious materials, such as fly ash and rice husk ash, are considered supplementary cement with different levels of efficiency. This equivalent cementitious material concept is then adapted for parameter development in conjunction with the effective void ratio proposed from our previous study. The developed single parameter, e?_st, can assess the mechanical properties of cementitious material-clay mixtures with different types of cementitious materials and under different test conditions.     

The impact of oil-derived products on the behaviour and biochemistry of the eleven-armed asteroid Coscinasterias muricata (Echinodermata)

The present study examines the impact of exposure to oil-derived products on the behaviour and physiology of the Australian 11-armed asteroid Coscinasterias muricata. Asteroids were exposed to dilutions of water-accommodated fraction (WAF) of Bass Strait stabilised crude oil, dispersed oil or burnt oil (n = 8) for 4 days whereby, prey-localisation behaviour was examined immediately after exposure, and following 2, 7, and 14 days depuration in clean seawater. The prey-localisation behaviour of asteroids exposed to WAF and dispersed oil was significantly affected though recovery was apparent following 7 and 14 days depuration, respectively. In contrast, there was no significant change in the prey-localisation behaviour of asteroids exposed to burnt oil. Behavioural impacts were correlated with the total petroleum hydrocarbon concentrations (C6-C36) in each exposure solution, WAF (1.8 mg l(-1)), dispersed oil (3.5 mg l(-1)) and burnt oil (1.14 mg l(-1), respectively. The total microsomal cytochrome P450 content was significantly lower (P(Dunnett test) < 0.01) in asteroids exposed to dispersed oil than in any other asteroids, whilst asteroid alkaline phosphatase activity was not significantly affected (P(ANOVA) = 0.11). This study further documents the deleterious impact of dispersed oil to marine organisms and supports further research in the area of in situ burning as a less damaging oil spill response measure towards benthic macro-invertebrates.     

Effects of MV Rena heavy fuel oil and dispersed oil on yellowtail kingfish early life stages

ABSTRACT

The grounding of the MV Rena has highlighted the lack of information concerning the effects of oil-related compounds on New Zealand marine life. Yellowtail kingfish (YTK), Seriola lalandi, embryos were exposed in static incubations to the water-accommodated fraction (WAF) of Rena heavy fuel oil as well as a similar preparation treated with the commercial dispersant Corexit 9500. Mortality in WAF treatments generally increased in association with total polycyclic aromatic hydrocarbon (tPAH) concentration over a 24-h period. Physical abnormalities were observed in some of the larvae exposed to WAF for 48 h. There was no survival in dispersed oil treatments after 24 h of exposure. These treatments had greater tPAH concentrations (2–53?µgL^?1) than equivalent WAF dilutions (0.2–1.5?µgL^?1?tPAH). Indications are that significant morbidity is induced in YTK at ecologically relevant tPAH concentrations. This highlights the need for further research into oil and dispersant toxicity in New Zealand marine species.     

Variations of the age of tides in the global oceans

Abstract

Earlier studies on the age of tide dealt mostly with the age of the semi‐diurnal tide in the Atlantic and Pacific Oceans. In these studies, the variations of the age of tide were determined making use of recorded tidal data up to and including the 1960s. In the present study, all available tidal data till the mid 1980s are utilized and the computations were done for the four global oceans: Atlantic, Pacific, Indian, and Arctic. Also, in addition to the age of the semi‐diurnal tide, the age of the parallax and the age of the diurnal tide were determined. The distribution patterns for the positive and negative ages for the semi‐diurnal tide, parallax, and diurnal tide were related whenever possible with the tidal amphidromic point locations and the amplitude ratios S₂/M₂, N₂/M₂, and O₁/K₁.     

帘蛤科4种养殖蛤群体遗传多样性和种间关系的fAFLP分析

利用荧光标记扩增片段长度多态性(fAFLP)技术对文蛤(Meretrix meretrix)、青蛤(Cyclina sinensis)、菲律宾蛤仔(Ruditapes philippinarum)和硬壳蛤(Mercenaria mercenaria)4种帘蛤科贝类的群体遗传多样性和种间关系进行了研究。选择EcoRⅠ/MseⅠ进行酶切,使用6个E 3/M 3引物组合进行扩增,共获得1 096个位点,多态位点比率95.1%,片段长度50~456 bp。其中,文蛤、青蛤、菲律宾蛤仔和硬壳蛤分别得到681,715,702和694个位点,相应的多态位点比率为76.8%,81.7%,83.0%和75.1%,得到17个种特异性位点,可作为4物种特征标记。分析了群体遗传相似系数和遗传多样性指数以及种间遗传相似系数。结果表明,硬壳蛤群体遗传相似系数最高(0.670 9),遗传多样性指数最低(0.236 0);菲律宾蛤仔群体遗传相似系数最低(0.592 5),遗传多样性指数最高(0.261 8);根据遗传相似系数采用UPGMA法构建了4物种32个体的聚类图,表明文蛤与菲律宾蛤仔遗传关系最近,青蛤与其他3物种遗传关系较远。     

The effect of periodic intermittency on the cyclic behavior of marine sedimentary clay

Abstract

For subway systems built in coastal areas, the marine sediments are subjected to regular load sequences of waves and intermittencies, resulting in more complex reactions in their cyclic behaviors compared with those under the uniform cyclic loading applied in common studies. This research involved a series of experimental investigations into the undrained behavior of undisturbed saturated marine sedimentary clay subjected to cyclic loading with periodic intermittency considering the initial deviator stress and the conventional uniform cyclic triaxial tests for comparison. The results indicate that periodic intermittency significantly increases cyclic resistance, manifested by weakening of the long-term response and decreases in the number of vibration times required to achieve a steady state. The effect is greater with longer intermittency durations. Furthermore, changes in the pore water volume during cyclic loading were analyzed via nondestructive detection based on nuclear magnetic resonance. A conversion from bound water to free water was observed, referring to vibration magnitude and times. Lastly, the macroscopic results observed in triaxial tests and the microscopic results obtained in the nuclear magnetic resonance test appear to be closely related, indicating that the use of the variation in pore water is an applicable approach to delineate microchanges.