Effects of benzo[a]pyrene on DNA damage and histological alterations in gonad of scallop Chlamys farreri

To investigate the biological impact of polycyclic aromatic hydrocarbons (PAHs) on reproductive system, scallops Chlamys farreri were continuously exposed to benzo[a]pyrene (BaP) (0.5, 3, 10 μg L^?1) during 15 days. DNA damage and histological alterations were examined in female gonad. DNA strand break levels significantly increased after 12 h exposure, and remained high and significantly different from control values until the end of the exposure. In the ovaries of the scallops exposed to 10 μg L^?1 BaP for ten days, histological analysis showed that the cytoplasts of the oocytes in the outer layer of the ovaries became sparse, and the nuclear membranes were obscure. Damaging effects on ovaries and oocytes were more severe after 15 days exposure. Degenerating oocytes increased and the connective tissue of the ovary envelops became loose. Electron microscopic examination revealed ultrastructural aspects of degenerating oocyte and degenerated oocyte after 15 days exposure.     

Distributions and fluxes of methyl chloride and methyl bromide in the East China Sea and the Southern Yellow Sea in autumn

We determined the distributions and fluxes of methyl chloride and methyl bromide in the East China Sea (ECS) and the Southern Yellow Sea (SYS) in November 2007. Methyl chloride and methyl bromide concentrations in the surface waters ranged from 47.1 to 163 pmol L^?1 and from 0.70 to 9.82 pmol L^? 1, with average values of 87.6 and 2.97 pmol L^? 1, respectively. The distributions of the two methyl halides were clearly influenced by the Yangtze (Changjiang) River effluent and Kuroshio water, with high concentrations appearing in the coastal zone and low values occurring in the open waters. A positive linear correlation was observed between methyl chloride and methyl bromide concentration anomalies in the surface waters, suggesting that they may share some origins in this coastal area. However, no correlation was found between the two methyl halide concentration anomalies and chlorophyll a in the surface waters. The vertical profiles of the two methyl halides were characterized by the maxima in the upper mixed layer. Both gases were generally supersaturated in the surface seawater, with mean sea-to-air fluxes of methyl chloride and methyl bromide of 391 and 20.0 nmol m^?2 d^? 1, respectively.     

Exposure of pink salmon embryos to dissolved polynuclear aromatic hydrocarbons delays development,prolonging vulnerability to mechanical damage

Exposure to dissolved polynuclear aromatic hydrocarbons (PAHs) from crude oil delays pink salmon (Oncorhynchus gorbuscha) embryo development, thus prolonging their susceptibility to mechanical damage (shock). Exposure also caused mortality, edema, and anemia consistent with previous studies. Hatching and yolk consumption were delayed, indicating the rate of embryonic development was slowed by PAH exposure. The net result was that exposed embryos were more susceptible to shock than normal, unexposed embryos. Susceptibility to shock was protracted by 4–6 d for more than a month in embryos exposed to exponentially declining, dissolved PAH concentrations in water passed through oiled rock; the initial total PAH concentration was 22.4 μg L⁻¹ and the geometric mean concentration was 4.5 μg L⁻¹ over the first 20 d. Protracted susceptibility to shock caused by exposure to PAHs dissolved from oil could potentially increase the reported incidence of mortality in oiled stream systems, such as those in Prince William Sound after the Exxon Valdez oil spill, if observers fail to discriminate between direct mortality and shock-induced mortality.     

Kinetic study reveals weak Fe-binding ligand,which affects the solubility of Fe in the Scheldt estuary

The chemistry of dissolved Fe(III) was studied in the Scheldt estuary (The Netherlands). Two discrete size fractions of the dissolved bulk (< 0.2 μm and < 1 kDa) were considered at three salinities (S = 26, 10 and 0.3).Within the upper estuary, where fresh river water meets seawater, the dissolved Fe concentration decreases steeply with increasing salinity, for the fraction < 0.2 μm from 536 nM at S = 0.3 to 104 nM at S = 10 and for the fraction < 1 kDa from 102 nM to 36 nM Fe. Further downstream, in the middle and lower estuary, this decrease in the Fe concentration continues, but is far less pronounced. For all samples, the traditionally recognised dissolved strong organic Fe-binding ligand concentrations are lower than the dissolved Fe concentrations.Characteristics of dissolved Fe-binding ligands were determined by observing kinetic interactions with adsorptive cathodic stripping voltammetry. From these kinetic experiments we concluded that apart from the well-known strong Fe-binding organic ligands (L, logK′ = 19–22) also weak Fe-binding ligands (P) existed with an α value (binding potential = K′ · [P]) varying between 10^11.1 and 10^11.9. The presence of this relatively weak ligand explained the high concentrations of labile Fe present in both size fractions in the estuary. This weak ligand can retard or prevent a direct precipitation after an extra input of Fe.The dissociation rate constants of the weak ligand varied between 0.5 × 10^− 4 and 4.3 × 10^− 4 s^− 1. The rate constants of the strong organic ligand varied between k_d = 1.5 × 10^− 3–17 × 10^− 2 s^− 1 and k_f = 2.2 × 10⁸–2.7 × 10⁹ M^− 1 s^− 1. The dissociation rate constant of freshly amorphous Fe-hydroxide was found to be between 4.3 × 10^− 4 and 3.7 × 10^− 3 s^− 1, more labile or equal to the values found by Rose and Waite [Rose, A.L., Waite, T.D., 2003a. Kinetics of hydrolysis and precipitation of ferric iron in seawater. Environ. Sci. Technol., 37, 3897–3903.] for freshly precipitated Fe in seawater.Kinetic rate constants of Fe with the ligand TAC (2-(2-Thiazolylazo)-p-cresol) were also determined. The formation rate constant of Fe(TAC)₂ varied between 0.1 × 10⁸ and 3.6 × 10⁸ M^− 1 s^− 1, the dissociation rate constant between 0.2 × 10^− 5 and 17 × 10^− 5 s^− 1 for both S = 26 and S = 10. The conditional stability constant of Fe(TAC)₂ (β_Fe(TAC)2′) varied between 22 and 23.4 for S = 10 and S = 26 more or less equal to that known from the literature (logβ_Fe(TAC)2′ = 22.4; [Croot, P.L., Johansson, M., 2000. Determination of iron speciation by cathodic stripping voltammetry in seawater using the competing ligand 2-(2-Thiazolylazo)-p-cresol (TAC). Electroanalysis, 12, 565–576.]). However, at S = 0.3 the logβ_Fe(TAC)2′ was 25.3, three orders of magnitude higher. Apparently the application of TAC to samples of low salinity can only be done when the correct β_Fe(TAC)2′ is known.     

Reproductive pattern and egg development of the deep-sea crab Paromola cuvieri (Brachyura,Homolidae) around the Canary Islands (NE Atlantic)

This work investigated the biology of Paromola cuvieri in the Atlantic Ocean, including reproductive patterns, sex structure, depth distribution and egg development. Females were more abundant than males, mainly at depths greater than 600 m. Males were dominant in size classes larger than 110 mm carapace width (CW), especially over 120 mm, for which only males were observed. The mean length of both sexes decreased with depth. P. cuvieri appears to have continuous reproduction throughout the year. Large females tend to spawn mainly between summer and winter, but smaller females spawn during the summer. Four maturity categories were identified based on the ovary colour, and these categories were histologically validated. Three categories of testes were identified according to their colour and morphology. Sexual maturity was estimated at sizes between 71.6 and 74.0 mm CW for females and at 91.0 mm CW for males. The relative growth showed changes along the ontogeny, at 73.6 mm CW (females) and 91.3–92.2 mm CW (males). Egg development appears to not be completely synchronous, and two colour patterns can be observed simultaneously. Four stages of egg development were found: eggs undivided and fully filled with yolk in orange egg masses; eggs with a free region of yolk visible in orange or red egg masses; embryos with slightly pigmented, crescent-shaped eyes in brown egg masses; and embryos with visible pigmented structures, enlarged eyes, segmented appendages and abdomen in brown egg masses. The mean number of external eggs carried by females in stage I was estimated to be 315,753±19,267. Three species of barnacle were observed on the exoskeleton: Poecilasma aurantia, Poecilasma crassa and Heteralepas microstoma (Cirripedia, Thoracica).     

Production and air–sea flux of halomethanes in the western subarctic Pacific in relation to phytoplankton pigment concentrations during the iron fertilization experiment (SEEDS II)

Iron could play a key role in controlling phytoplankton biomass and productivity in high-nutrient, low-chlorophyll regions. As a part of the iron fertilization experiment carried out in the western subarctic Pacific from July to August 2004 (Subarctic Pacific iron Experiment for Ecosystem Dynamics Study II—SEEDS II), we analysed the concentrations of trace gases in the seawater for 12 d following iron fertilization. The mean concentrations of chlorophyll a in the mixed layer (5–30 m depth) increased from 0.94 to 2.81 μg L^–1 for 8 d in the iron patch. The mean concentrations of methyl bromide (CH₃Br; 5–30 m depth) increased from 6.4 to 13.4 pmol L^–1 for 11 d; the in-patch concentration increased relative to the out-patch concentration. A linear correlation was observed between the concentrations of 19′-hexanoyloxyfucoxanthin, which is a biomarker of several prymnesiophytes, and CH₃Br in the seawater. After fertilization, the air–sea flux of CH₃Br inside the patch changed from influx to efflux from the ocean. There was no clear evidence for the increase in saturation anomaly of methyl chloride (CH₃Cl) due to iron fertilization. Furthermore, CH₃Cl fluxes did not show a tendency to increase after fertilization of the patch. In contrast to CH₃Br, no change was observed in the concentrations of bromoform (in-patch day 11 and out-patch day 11: 1.7 and 1.7 pmol L^–1), dibromomethane (2.1 and 2.2 pmol L^–1), and dibromochloromethane (1.0 and 1.2 pmol L^–1, respectively). The concentration of isoprene, which is known to have a relationship with chlorophyll a, did not change in this study. The responses of trace gases during SEEDS II differed from the previous findings (in situ iron enrichment experiment—EisenEx, Southern Ocean iron experiment—SOFeX, and Subarctic Ecosystem Response to Iron Enrichment Study—SERIES). Thus, in order to estimate the concomitant effect of iron fertilization on the climate, it is important to assess the induction of biological activity and the distributions/air–sea fluxes of trace gases by iron addition.     

Force and flow characteristics of a circular cylinder with uniform surface roughness at subcritical Reynolds numbers

The main purpose of this study is to establish a better understanding of the relationship between drag reduction and surface roughness. Experiments were conducted to measure the force and flow characteristics of a circular cylinder with different types of artificial surface roughness over the range 6 × 10³ < Re < 8 × 10⁴ (Re is based on the cylinder diameter D). The roughness cylinder was formed by covering the exterior surface of the cylinder with uniformly distributed (1) sandpaper, (2) netting, and (3) dimples. The roughness coefficient ranged from k/D = 0.0028 to 0.025 (k is the roughness height). A detailed quantitative measurement of the flow field around the cylinder using Particle Imaging Velocimetry (PIV) was carried out. The hydrodynamic force coefficients (drag and lift) of the rough cylinders are compared against those of a smooth cylinder measured under the same flow conditions. It is found that certain configuration of surface roughness significantly reduces the mean drag coefficient of the cylinder, particularly at large Reynolds numbers. In addition, the root-mean-square (r.m.s.) lift coefficient of the rough cylinders is considerably lower than that of a smooth cylinder.     

Acoustic discrimination of two zooplankton species (mysid) at 38 and 120 kHz

Using bifrequency sonar (38 kHz, 120 kHz) directed towards the open sea from the inside of a submarine cave, two species of Mysidacea (Crustacea), similar in shape but not in size, and with different patterns of behaviour, were observed simultaneously and discriminated, and their biomass was estimated during their migration. The first species, Hemimysis speluncola (<1 cm length), lives in the submarine cave, forming a distinct community that migrates horizontally. The second species, Siriella jaltensis (>1 cm length), lives in the open sea and migrates vertically. These species are both detected clearly at 120 kHz, but only the larger one, Siriella jaltensis, is detected at 38 kHz. This distinction allows one to determine the size limits of planktonic objects detected at these frequencies, i.e. 3 mm at 120 kHz and 10 mm at 38 kHz, corresponding to one quarter of the wavelength. The target strength (TS) of each species was calculated from the field data and compared to results calculated from three models. As the volume of the cave occupied by the Hemimysis population is about 300 m³, and the density of the swarm is 36,000 individuals/m³, the number of individuals in the cave is estimated to be around 10 million (or 24 kg). The density of the open-water population of Siriella is estimated to be 13 individuals/m³.     

Seasonal patterns in the fish and epibenthic crustaceans community of an intertidal zone with particular reference to the population dynamics of plaice and brown shrimp

The intertidal zone of a sandy beach located on the French coast of the Eastern Channel, was sampled during spring and summer 2000 to analyse the community structure of fish and epibenthic crustaceans. The presence of many juvenile fish (mainly O-group) and crustaceans indicated the important role played by the intertidal zone as a nursery ground. The brown shrimp, Crangon crangon and O-group plaice, Pleuronectes platessa are the two most abundant species of the intertidal ecosystem.Plaice settlement period extended from mid-March to early June. Over the survey period, densities increased to maximum numbers of about 27 ind. 10 m⁻² in mid-April. In the following week, density rapidly decreased due to mortality and migration into deeper waters. The mortality was attributed mainly to predation by brown shrimp (C. crangon) and to a lesser extent by the shore crab (Carcinus maenas). The mean size of 0-group plaice increased from 19 mm in mid-April to 58 mm in July. Growth of juvenile 0-group plaice is described by an exponential equation: total length (TL, mm) = 12.602 e^{0.022 (post-settlement age)}. Post-settlement growth rates, estimated by otolith microstructure analysis, were 0.38 mm d⁻¹ for plaice ≤30 mm and 0.61 mm d⁻¹ for plaice >30 mm. Settlement of juvenile brown shrimp started in mid-April, peaked in early June (93 ind. 10 m⁻²) and continued with fluctuating intensity throughout the summer. Growth rate of juvenile C. crangon, estimated after the settlement peak, was 0.163 mm d⁻¹. Growth conditions of juvenile plaice and C. crangon were analysed by comparing estimated growth in the field with predicted maximum growth according to temperature-growth rate models from experimental studies of growth with unlimited food supply. For plaice, the estimated growth rate was lower (plaice ≤30 mm) but similar (plaice >30 mm) to the predicted maximum growth suggesting a food limitation only for newly settled individual. The observed increase in mean length of juvenile C. crangon was lower than the maximum possible growth. The function of the intertidal zone in the early juvenile stages of marine species is discussed.     

Effects of tributyltin on salmon interrenal CYP11β, steroidogenic factor-1 and glucocorticoid receptor transcripts in the presence and absence of second messenger activator,forskolin

The mechanisms by which TBT produces modulations of the endocrine systems are not fully described. In this study, juvenile salmon were force-fed diet containing TBT (0: solvent control, 0.1, 1 and 10 mg/kg fish) for 72 h. Subsequently, fish exposed to solvent control and 10 mg/kg TBT were exposed to waterborne concentration of the adenyl cyclase stimulator forskolin (200 μg/L) for 2 and 4 h. Tissue and blood were sampled from individual fish (n = 6). Gene expression patterns of CYP11β, steroidogenic factor-1 (SF-1), and glucocorticoid receptor (GlucR) were determined by qPCR. TBT generally decreased mRNA levels of CYP11β, GlucR and SF-1, compared to the solvent control and these effects were differentially modulated by the presence of forskolin. This study suggests that TBT may exert broader endocrine disrupting effects through possible modulation of cAMP/PKA second messenger systems.     

Total organic and inorganic carbon exchange through the Strait of Gibraltar in September 1997

The total organic carbon (TOC) and total inorganic carbon (C_T) exchange between the Atlantic Ocean and the Mediterranean Sea was studied in the Strait of Gibraltar in September 1997. Samples were taken at eight stations from western and eastern entrances of the Strait and at the middle of the Strait (Tarifa Narrows). TOC was analyzed by a high-temperature catalytic oxidation method, and C_T was calculated from alkalinity–pH_T pairs and appropriate thermodynamic relationships. The results are used in a two-layer model of water mass exchange through the Strait, which includes the Atlantic inflow, the Mediterranean outflow and the interface layer in between. Our observations show a decrease of TOC and an increase of C_T concentrations from the surface to the bottom: 71–132 μM C and 2068–2150 μmol kg⁻¹ in the Surface Atlantic Water, 74–95 μM C and 2119–2148 μmol kg⁻¹ in the North Atlantic Central Water, 63–116 μM C and 2123–2312 μmol kg⁻¹ in the interface layer, and 61–78 μM C and 2307–2325 μmol kg⁻¹ in the Mediterranean waters. However, within the Mediterranean outflow, we found that the concentrations of carbon were higher at the western side of the Strait (75–78 μM C, 2068–2318 μmol kg⁻¹) than at the eastern side (61–69 μM C, 2082–2324 μmol kg⁻¹). This difference is due to the mixing between the Atlantic inflow and the Mediterranean outflow on the west of the Strait, which results in a flux of organic carbon from the inflow to the outflow and an opposite flux of inorganic carbon. We estimate that the TOC input from the Atlantic Ocean to the Mediterranean Sea through the Strait of Gibraltar varies from (0.97±0.8)10⁴ to (1.81±0.90)10⁴ mol C s⁻¹ (0.3×10¹² to 0.56×10¹² mol C yr⁻¹), while outflow of inorganic carbon ranges from (12.5±0.4)10⁴ to (15.6±0.4)10⁴ mol C s⁻¹ (3.99–4.90×10¹² mol C yr⁻¹). The high variability of carbon exchange within the Strait is due to the variability of vertical mixing between inflow and outflow along the Strait. The prevalence of organic carbon inflow and inorganic carbon outflow shows the Mediterranean Sea to be a basin of active remineralization of organic material.     

PCBs in the fish assemblage of a southern European estuary

The Mondego estuary fish assemblage was studied for the accumulation of PCBs. Three sampling stations were visited along an estuarine salinity gradient, and, in total, 15 species were collected. Analysis of PCBs revealed no significant differences among the sampling stations, although differences were observed among the fish assemblages. Fish assemblages could be divided into three groups. The first group comprised those with higher concentration (more than 10 ng g^− 1, dw), included the species Gobius niger, Sardina pilchardus, Anguilla anguilla, Pomatoschistus microps, Chelidonichthys lucerna and Liza ramada; the second group with medium concentration (5–10 ng g^− 1, dw), included the species Pomatoschistus minutus, Dicentrarchus labrax, Atherina presbyter, Chelon labrosus, Diplodus vulgaris, Platichthys flesus and Cilata mustela; and a third group with low concentration (less than 5 ng g^− 1, dw), included the species Solea solea and Callionymus lyra. A positive correlation was found between lipid content and PCB concentrations. To evaluate the influence of the residence time of species on the accumulation of PCBs, species were divided into two groups: species that spend more than 3 years in the estuary, and species that spend less than 3 years in the estuary. Species that spend more than 3 years in the estuary presented higher concentrations than species that spend less than 3 years in the estuary. CBs 138 and 153 had higher concentration, and tended to increase with time spent in the estuary.     

Picophytoplankton in the equatorial Pacific: vertical distributions in the warm pool and in the high nutrient low chlorophyll conditions

Abundance distribution and cellular characteristics of picophytoplankton were studied in two distinct regions of the equatorial Pacific: the western warm pool (0°, 167°E), where oligotrophic conditions prevail, and the equatorial upwelling at 150°W characterized by high-nutrient low-chlorophyll (HNLC) conditions. The study was done in September–October 1994 during abnormally warm conditions. Populations of Prochlorococcus, orange fluorescing Synechococcus and picoeukaryotes were enumerated by flow cytometry. Pigment concentrations were studied by spectrofluorometry. In the warm pool, Prochlorococcus were clearly the dominant organisms in terms of cell abundance, estimated carbon biomass and measured pigment concentration. Integrated concentrations of Prochlorococcus, Synechococcus and picoeukaryotes were 1.5×10¹³, 1.3×10¹¹ and 1.5×10¹¹ cells m⁻², respectively. Integrated estimated carbon biomass of picophytoplankton was 1 g m⁻², and the respective contributions of each group to the biomass were 69, 3 and 28%. In the HNLC waters, Prochlorococcus cells were slightly less numerous than in the warm pool, whereas the other groups were several times more abundant (from 3 to 5 times). Abundance of Prochlorococcus, Synechococcus and picoeukaryotes were 1.2×10¹³, 6.2×10¹¹ and 5.1×10¹¹ cells m⁻², respectively. The integrated biomass was 1.9 g C m⁻². Prochlorococcus was again the dominant group in terms of abundance and biomass (chlorophyll, carbon); the respective contributions of each group to the carbon biomass were 58, 7 and 35%. In the warm pool the total chlorophyll biomass was 28 mg m⁻², 57% of which was divinyl chlorophyll a. In the HNLC waters, the total chlorophyll biomass was 38 mg m⁻², 44% of which was divinyl chlorophyll a. Estimates of Prochlorococcus, Synechococcus and picoeukaryotes cell size were made in both hydrological conditions.     

Persian Gulf response to a wintertime shamal wind event

The results from a～1 km resolution HYbrid Coordinate Ocean Model (HYCOM), forced by 1/2° Navy Operational Global Atmospheric Prediction System (NOGAPS) atmospheric data, were used in order to study the dynamic response of the Persian Gulf to wintertime shamal forcing. Shamal winds are strong northwesterly winds that occur in the Persian Gulf area behind southeast moving cold fronts. The period from 20 November to 5 December 2004 included a well defined shamal event that lasted 4–5 days. In addition to strong winds (16 m s^?1) the winter shamal also brought cold dry air (T_a=20 °C, q_a=10 g kg^?1) which led to a net heat loss in excess of 1000 W m^?2 by increasing the latent heat flux. This resulted in SST cooling of up to 10 °C most notably in the northern and shallower shelf regions. A sensitivity experiment with a constant specific humidity of q_a=15 g kg^?1 confirmed that about 38% of net heat loss was due to the air–sea humidity differences. The time integral of SST cooling closely followed the air–sea heat loss, indicating an approximate one-dimensional vertical heat balance. It was found that the shamal induced convective vertical mixing provided a direct mechanism for the erosion of stratification and deepening of the mixed layer by 30 m. The strong wind not only strengthened the circulation in the entire Persian Gulf but also established a northwestward flowing Iranian Coastal Current (ICC, 25–30 cm s^?1) from the Strait of Hormuz to about 52°E, where it veered offshore. The strongest negative sea level of 25–40 cm was generated in the northernmost portion of the Gulf while the wind setup against the coast of the United Arab Emirates established a positive sea level of 15–30 cm. The transport through the Strait of Hormuz at 56.2°E indicated an enhanced outflow of 0.25 Sv (Sv≡10⁶ m³ s^?1) during 24 November followed by an equivalent inflow on the next day.     

Microbial biomass and viral infections of heterotrophic prokaryotes in the sub-surface layer of the central Arctic Ocean

Seawater samples were collected for microbial analyses between 55 and 235 m depth across the Arctic Ocean during the SCICEX 97 expedition (03 September–02 October 1997) using a nuclear submarine as a research platform. Abundances of prokaryotes (range 0.043–0.47×10⁹ dm⁻³) and viruses (range 0.68–11×10⁹ dm⁻³) were correlated (r=0.66, n=150) with an average virus:prokaryote ratio of 26 (range 5–70). Biomass of prokaryotes integrated from 55 to 235 m ranged from 0.27 to 0.85 g C m⁻² exceeding that of phytoplankton (0.005–0.2 g C m⁻²) or viruses (0.02–0.05 g C m⁻²) over the same depth range by an order of magnitude on average. Using transmission electron microscopy (TEM), we estimated that 0.5% of the prokaryote community on average (range 0–1.4%) was visibly infected with viruses, which suggests that very little of prokaryotic secondary production was lost due to viral lysis. Intracellular viruses ranged from 5 to >200/cell, with an average apparent burst size of 45±38 (mean±s.d.; n=45). TEM also revealed the presence of putative metal-precipitating bacteria in 8 of 13 samples, which averaged 0.3% of the total prokaryote community (range 0–1%). If these prokaryotes are accessible to protistan grazers, the Fe and Mn associated with their capsules might be an important source of trace metals to the planktonic food web. After combining our abundance and mortality data with data from the literature, we conclude that the biomass of prokaryoplankton exceeds that of phytoplankton when averaged over the upper 250 m of the central Arctic Ocean and that the fate of this biomass is poorly understood.     

Factors influencing the abundance of deep pelagic bioluminescent zooplankton in the Mediterranean Sea

Measurements of the density of deep pelagic bioluminescent zooplankton (BL) were made with the Intensified Silicon Intensifier Target (ISIT) profiler in the Ligurian, Tyrrhenian, Adriatic, Ionian Seas and the Strait of Sicily from ～300 m to near seafloor. Mean BL densities ranged from 2.61 m^?3 at 500–1000 m depth in the Adriatic Sea to 0.01 m^?3 at 4000–5000 m depth in the E Ionian Sea. We investigated drivers of spatial variation of deep pelagic BL density. Linear regression was applied between surface chlorophyll a (Chl a) concentration and underlying BL density. Chl a values were determined from satellite derived 100 km radius composites (six 10-day means per ISIT deployment, over preceding 60 days). At 500–1000 m depth we found a significant positive relationship between mean BL density and mean Chl a in the period prior to 0–10 days (at 1% level) and prior to 10–40 days (at 5% level). Beyond 40 days no relationship between BL density and Chl a was found at this depth. At depths 1000–1500 m BL density values were low and no significant relationship with Chl a was detected. Generalised additive modelling (GAM) was used to assess the influence of benthic hotspots (seamount; cold water coral mound; mud volcano) on overlying BL density. A reduction in BL density was found downstream of the Palinuro seamount from 300 to 600 m. No effect on BL density in the overlying water column was detected from the presence of cold water corals. Higher BL densities were detected over the W Madonna dello Ionio mud volcano than at other sites sampled in the NW Ionian Sea. We find surface Chl a to be a good predictor of BL density in the mesopelagic zone; below this depth we hypothesise that processes affecting the efficiency of particle export to deep water may exert greater influence on BL density.     

Seismic quality factors across a bottom simulating reflector in the Makran Accretionary Prism,Arabian Sea

The hydrate-bearing sediments above the bottom simulating reflector (BSR) are associated with low attenuation or high quality factor (Q), whereas underlying gas-bearing sediments exhibit high attenuation. Hence, estimation of Q can be important for qualifying whether a BSR is related to gas hydrates and free-gas. This property is also useful for identifying gas hydrates where detection of BSR is dubious. Here, we calculate the interval Q for three submarine sedimentary layers bounded by seafloor, BSR, one reflector above and another reflector below the BSR at three locations with moderate, strong and no BSR along a seismic line in the Makran accretionary prism, Arabian Sea for studying attenuation (Q⁻¹) characteristics of sediments. Interval Q for hydrate-bearing sediments (layer B) above the BSR are estimated as 191 ± 11, 223 ± 12, and 117 ± 5, whereas interval Q for the underlying gas-bearing sediments (layer C) are calculated as 112 ± 7, 107 ± 8 and 124 ± 11 at moderate, strong and no BSR locations, respectively. The large variation in Q is observed at strong BSR. Thus Q can be used for ascertaining whether the observed BSR is due to gas hydrates, and for identifying gas hydrates at places where detection of BSR is rather doubtful. Interval Q of 98 ± 4, 108 ± 5, and 102 ± 5, respectively, at moderate, strong and no BSR locations for the layer immediately beneath the seafloor (layer A) show almost uniform attenuation.     

The seasonal succession of zooplankton in the Southern Ocean south of Australia,part I: The seasonal ice zone

Between November 2001 and March 2002 an Australian/Japanese collaborative study completed six passes of a transect line in the Seasonal-Ice Zone (south of 62°S) along 140°E. Zooplankton samples were collected with a NORPAC net on 22–28 November, and a Continuous Plankton Recorder on 10–15 January, 11–12 February, 19–22 February, 25–26 February, and 10–11 March. Zooplankton densities were lowest on 22–28 November (ave=61 individuals (ind) m⁻³), when almost the entire transect was covered by sea ice. By 10–15 January sea surface temperature had increased by ∼2 °C across the transect line, and the study area was ice-free. Total zooplankton abundance had increased to maximum levels for the season (ave=1301 ind m⁻³; max=1979 ind m⁻³), dominated by a “Peak Community” comprising Oithona similis, Ctenocalanus citer, Clausocalanus laticeps, foraminiferans, Limacina spp., appendicularians, Rhincalanus gigas and large calanoid copepodites (C1–3). Total densities declined on each subsequent transect, returning to an average of 169 ind m⁻³ on 10–11 March. The seasonal density decline was due to the decline in densities of “Peak Community” taxa, but coincided with the rise of Euphausia superba larvae into the surface waters, increased densities of Salpa thompsoni, and an increased contribution of C4 to adult stages to the populations of Calanoides acutus, Calanus propinquus and Calanus simillimus. The seasonal community succession appeared to be influenced by the low sea ice extent and southward projection of the ACC in this region. The relatively warm ACC waters, together with low krill biomass, favoured high densities of small grazers during the January/February bloom conditions. The persistence of relatively warm surface waters in March and the seasonal decrease in chlorophyll a biomass provided favorable conditions for salps, which were able to penetrate south of the Southern Boundary.     

Geometry and migration characteristics of bedforms under waves and currents: Part 2: Ripples superimposed on sandwaves

This paper presents results of a series of detailed measurements of geometric and migrating characteristics of ripples superimposed upon sandwaves under the action of combined waves and currents. Velocity measurements within the fluid, surface wave characteristics and 3D mapping of the bottom were recorded with an Acoustic Doppler Velocimeter (ADV), an acoustic water level sensor and a 32 composite element array of sub-aquatic acoustic sensors, respectively. Bottom records were statistically analyzed to obtain height, length and migration rates of ripples. Experiments examined ripple heights and wavelengths for the mobility factors (as defined in Eq. (4)) and the Reynolds wave number within the ranges 10 < ψ < 88 and 16 × 10³ < Re_w < 5 × 10⁵, respectively. Measured values were compared with laboratory and field data together with semi-empirical and analytical formulae from the literature. Good correlation was obtained when plotting measured ripple length and length in dimensionless form as a function of the Reynolds wave number Re_w. Under a given hydraulic condition, it was observed that ripples with different geometric characteristics may coexist at different locations over the sandwave. Ripple steepness is presented as a function of the Shields parameter although characterized with rather large scatter. Finally, average ripple migration speed is presented as a function of the Shields parameter and the mobility number.