The abundance of fish larvae in estuaries: Within-tide variability at inlet and immigration

The larvae of winter spawning fishes immigrating through Beaufort Inlet into the Pamlico Sound estuarine system (North Carolina, United States) were passively sampled during 14 flood tides and nine of the following ebb tides. Five taxa were abundant in the catches. Pelagic species were represented by Atlantic menhaden, Brevoortia tyrannus. Nonpelagic taxa were represented by Atlantic croaker, Micropogonias undulatus, spot, Leiostomus xanthurus, pinfish, Lagodon rhomboides, and flatfishes of the genus Paralichthys. The sampling was continuous and the sample duration varied between 4 min and 32 min. The longest samples furnished the most accurate and precise estimates of the mean tidal abundance. Sampling 10 min each hour of the tide was the most efficient protocol for determining the mean tidal abundance. The abundance patterns was shown to differ according to the pelagic or nonpelagic behavior of the larvae. Analyses suggested the nonpelagic taxa rely on astronomical tides and vertical migrations synchronous with the direction of the tide flow to be transported upstream in the estuary. These larvae were not dependent upon the strength of the tide to penetrate the inlet. In contrast, menhaden larvae seemed to rely primarily on strong food tides to enter the estuarine area, probably because the vertical positioning of the species within the water column is not dependent upon the direction of the tide. However, if larvae were present outside of the inlet, strong flood tides indiscriminately brought pelagic and nonpelagic species into the estuary.     

A spatially-explicit approach for estimating carrying capacity: An application for the Atlantic menhaden (Brevoortia tyrannus) in Chesapeake Bay

A spatially-explicit methodology was developed for estimating system carrying capacities of fish stocks, and used to estimate the seasonal and spatial patterns of carrying capacity of Chesapeake Bay for Atlantic menhaden (Brevoortia tyrannus). We used a spatially-explicit three-dimensional (3-D) model that divided the heterogeneous habitat of Chesapeake Bay into over 4,000 cubes. Each cube represented a volume of water that was characterized by a specific set of environmental variables (phytoplankton biomass, temperature, and dissolved oxygen) driven by the 3-D water quality model. Foraging and bioenergetics models transformed the environmental variables into measures of potential growth rates of menhaden. Potential carrying capacity of menhaden was estimated as a function of phytoplankton production, menhaden consumption rate, and potential growth rate, combining phytoplankton production, thermal habitat, and menhaden physiology into one ecological value that is a measure of habitat quality from the perspective of the fish. Seasonal analysis of the Chesapeake Bay carrying capacity for Atlantic menhaden suggested two bottleneck periods: one in early June and a second during the fall. The bottleneck in carrying capacity was at about 10 billion age-0 fish. Annual recruitment of age-0 menhaden for the entire Atlantic coast of the U.S. ranged from 1.2–18.6 billion fish between 1955 and 1986. It appears that carrying capacity of, Chesapeake Bay does not limit the coastwide production of young menhaden. Any conditions such as nutrient reduction strategies, further eutrophication, or global climatic warming, that may influence the carrying capacity during the fall or early June periods, may ultimately alter coastwide abundance of menhaden through changes in Chesapeake Bay carrying capacity.     

Trophic relationships of three sunfishes (Lepomis spp.) in an estuarine bayou

We examined ontogenetic, interspecific, and seasonal trophic patterns among sympatric sunfish species, redspotted sunfish,Lepomis miniatus; redear sunfish,Lepomis microlophus; and bluegill,Lepomis macrochirus, in an estuarine bayou. In particular we studied these feeding patterns in relation to relative abundances of prey from different benthic feeding habitats. All three sunfishes showed ontogenetic divergence in their trophic niches, reflecting different ecomorphological specializations. Small fishes depended on zooplankton, whereas larger fishes of all three species shifted their diets to benthic macrofauna. A potential for trophic resource partitioning was reflected by dietary differences among the three sunfish species. One impalied mechanism for resource partitioning was feeding habitat, as redear sunfish frequently used sediment-associated prey, while bluegill showed greater use of water-column-associated prey, and redspotted sunfish often used SAV-associated prey. However, all three sunfishes apparently used each feeding habitat to some degree; and, trophic differences were more clearly based on prey type than on feeding habitat. Redear sunfish, which can crush hard-shelled prey, exhibited the most distinctive diet. An apparent seasonal shift in feeding habitat occurred in autumn/winter, as indicated by increased overlap between diets and SAV. This shift was facilitated by changes in the relative abundances of several common prey types between benthic habitats. The relative abuandance and use of freshwater and estuarine-derived prey also varied seasonally, suggesting a possible trophic benefit of consistent prey availability in the estuarine bayou.     

Feeding habits of red drum (Sciaenops ocellatus) in Galveston Bay, Texas: Seasonal diet variation and predator-prey size relationships

Feeding habits, seasonal diet variation, and predator size-prey size relationships of red drum (Sciaenops ocellatus) were investigated in Galveston Bay, Texas through stomach contents analysis. A total of 598 red drum ranging from 291–763 mm total length were collected and their stomach contents analyzed during fall 1997 and spring 1998. The diet of red drum showed significant seasonal patterns, and was dominated by white shrimp (Penaeus setiferus) during fall and gulf menhaden (Brevoortia patronus) during spring. Blue crab (Callinectes sapidus) was an important component of red drum diets during both seasons. Significant differences existed between prey types consumed during fall and spring as red drum diet reflected seasonal variation in prey availability. Predictive regression equations were generated to estimate original carapace width of blue crabs from several measurements taken from carapace fragments recovered in red drum stomachs. Regressions were highly significant (r²>0.97) and increased the number of blue crabs with size information nearly three fold. Predator size-prey size relationships were determined for red drum feeding on white shrimp, gulf menhaden, and blue crab. Although regression slopes were statistically significant, prey sizes increased only slightly with increasing red drum size. Comparisons of prey sizes consumed by red drum with sizes occurring in the field indicate that red drum feed in nearshore shallow water habitats, which serve as nursery areas for many juvenile fishes and crustaceans. Our findings demonstrate that red drum feed on several prey species of commercial and recreational value and may have important effects on estuarine community structure.     

Nursery Habitat Shifts in an Estuarine Ecosystem<Emphasis Type="Bold">:</Emphasis> Patterns of Use by Sympatric Catfish Species

The seasonal and spatial distribution (density and biomass) of five size classes of two catfish species (Cathorops spixii and Cathorops agassizii) were studied along an estuarine ecocline to test the relative importance of the nursery function of each habitat. Seasonal vs. area interactions were significant for all size classes of both species. During the early rainy season, the middle estuary is an important nursery habitat for juveniles of both species. When environmental conditions change during the late rainy season, the C. spixii primary nursery habitat shifts to the lower estuary. During this period, juveniles of C. agassizii remain in the middle estuary. Another important ecological area is the upper estuary, which becomes a breeding, spawning and hatchery area during the late dry season for both species. The nursery function of habitats shifts according to the seasonal fluctuation of salinity and dissolved oxygen, and each species responds differently to this change.     

The Effect of Contaminated Prey on Feeding,Activity, and Growth of Young-of-the-Year Bluefish, <Emphasis Type="Italic">Pomatomus saltatrix</Emphasis>, in the Laboratory

Young-of-the-year (YOY) bluefish, Pomatomus saltatrix, reside in some contaminated estuaries of the mid-Atlantic bight during their early life history, and as a result of this exposure, they may bioaccumulate high levels of contaminants, including polychlorinated biphenyls (PCBs), pesticides, and methyl mercury. Young-of-the-year bluefish from the Tuckerton, NJ, area of Great Bay (TK) were fed daily in a laboratory with common prey fish, menhaden, and mummichog from two sites: TK (reference) or Hackensack River (HR) (contaminated). Bluefish fed HR prey and the HR prey themselves had significantly elevated concentrations of PCBs, pesticides, and total mercury compared to TK counterparts. The bluefish fed contaminated prey for 4 months displayed significantly reduced feeding, spontaneous activity, and growth compared to the bluefish fed TK prey. Alterations of bluefish behavior and growth from exposure to contaminants may have detrimental effects on migration, overwinter survival, and recruitment success.     

Formation and seasonal evolution of Atlantic menhaden juvenile nurseries in coastal estuaries

A hypothesis on the formation and seasonal evolution of Atlantic menhaden (Brevoortia tyrannus) juvenile nurseries in coastal estuaries is described. A series of cruises were undertaken to capture postmetamorphic juvenile menhaden and to characterize several biological and physical parameters along estuarine gradients. The two study systems, the Neuse and Pamlico rivers in North Carolina, contain important menhaden nursery grounds. Juvenile menhaden abundance was found to be associated with gradients of phytoplankton biomass as evidenced by chlorophylla levels in the upper water column. Fish abundances were only secondarily associated with salinity gradients as salinity was a factor that moderated primary production in the estuary. The persistence of spatial and temporal trends in the distribution of phytoplankton in the Neuse and Pamlico estuaries was reviewed. The review suggested that postmetamorphic juvenile menhaden modify their distribution patterns to match those created by phytoplankton biomass, which in turn makes them most abundant in the phytoplankton maxima of estuaries. Because the location of these maxima varies with the mixing and nutrient dynamics of different estuaries, so will the location of the nursery.     

Occurrence of juvenile Atlantic menhanden,Brevoortia tyrannus,in the Annapolis River,Nova Scotia

This is the first report of juvenile (age 0+) Atlantic menhadens, Brevoortia tyrannus, in the Annapolis River, Nova Scotia. Juvenile Atlantic menhaden were incidentally collected during a 3-yr study of the effects of the STRAFLO hydro-power turbine at Annapolis Royal on alosine fishes. Length distribution and time of capture of collected fish suggest that Atlantic menhaden may spawn in the Bay of Fundy.     

Seasonal and Spatial Variations in Fish and Macroinvertebrate Communities of Oyster and Adjacent Habitats in a Mississippi Estuary

In Grand Bay National Estuarine Research Reserve (Grand Bay NERR), Mississippi, we used quantitative drop sampling in three common shallow estuarine habitats—low profile oyster reef (oyster), vegetated marsh edge (VME), and nonvegetated bottom (NVB)—to address the dearth in research comparing nekton utilization of oyster relative to adjacent habitats. The three habitats were sampled at two distinct marsh complexes within Grand Bay NERR. We collected a total of 633 individual fishes representing 41 taxa in 22 families. The most diverse fish family was Gobiidae (seven species) followed by Blennidae and Poeciliidae (three species each). We collected a total of 2,734 invertebrates representing 24 taxa in 11 families. The most diverse invertebrate family was Xanthidae (six species) followed by Palaemonidae (five species). We used ordination techniques to examine variation in species relative abundance among habitats, seasons, and sampling areas, and to identify environmental gradients correlated with species relative abundances. Our resulted indicated that oyster provided a similarly complex and important function as the adjacent VME. We documented three basic trends related to the importance of oyster and VME habitats: 1) Oyster and VME provide habitat for significantly more species relative to NVB, 2) Oyster and VME provide habitat for rare species, and 3) Several species collected across multiple habitats occurred at higher abundances in oyster or VME habitat. We also found that salinity, temperature, and depth were associated with seasonal and spatial shifts in nekton communities. Lastly, we found that the relative location of the two marsh complexes we studied within the context of the whole estuary may also explain some of the temporal and spatial differences in communities. We conclude that oyster habitat supported a temporally diverse and spatially distinct nekton community and deserves further attention in research and estuarine conservation efforts.     

Interactions among some dominant estuarine nekton species

Interactions between pairs of numerically dominant species collected at inlet and creek shorezone and channel habitats within a high salinity estuary in northeastern South Carolina were examined using two-way contingency tables and binomial tests. Of the significant species interactions, over 71% were positive and these primarily occurred within shorezone habitats. The strongest positive interactions were between young-of-the-year spot (Leiostomus xanthurus) and blue crab (Callinectes sapidus) juveniles in both shorezone habitats, and between striped killifish (Fundulus majalis), white mullet (Mugil curema), and striped anchovies (Anchoa hepsetus) in the inlet shorezone habitat. One of the most positive species associations in channel habitats was between the bay anchovy (Anchoa mitchilli) and the Atlantic brief squid (Lolliguncula brevis). These positive relationships between species may be explained by one species enhancing the habitat for another, both species responding to similar environmental conditions, cooperative social interactions such as mixed schooling, or the attraction of predators to prey. Negative interactions were found between schools of Atlantic silversides (Menidia menidia) and striped killifish in the inlet shorezone and between schools of Atlantic silversides and bay anchovies in the creek shorezone. Schools of Atlantic silversides may either displace or compete with other common shorezone species. Positive and negative interactions suggest that relationships between some species pairs did not occur randomly within certain habitats and may have contributed to the organization of the estuarine nekton community. Differences in the strengths and direction of interactions of certain species pairs among habitats and seasons were probably related to the differences in the physical characteristics of those habitats and/or changes in the relative abundance of dominant species and life stages over time.     

Habitat associations of estuarine species: Comparisons of intertidal mudflat, seagrass (Zostera marina), and oyster (Crassostrea gigas) habitats

The complexity of habitat structure created by aquatic vegetation is an important factor determining the diversity and composition of soft-sediment coastal communities. The introduction of estuarine organisms, such as oysters or other forms of aquaculture, that compete with existing forms of habitat structure, such as seagrass, may affect the availability of important habitat refugia and foraging resources for mobile estuarine fish and decapods. Fish and invertebrate communities were compared between adjacent patches of native seagrass (Zostera marina), nonnative cultured oyster (Crassostrea gigas), and unvegetated mudflat within a northeastern Pacific estuary. The composition of epibenthic meiofauna and small macrofaunal organisms, including known prey of fish and decapods, was significantly related to habitat type. Densities of these epifauna were significantly higher in structured habitat compared to unstructured mudflat. Benthic invertebrate densities were highest in seagrass. Since oyster aquaculture may provide a structural substitute for seagrass being associated with increased density and altered composition of fish and decapod prey resources relative to mudflat, it was hypothesized that this habitat might also alter habitat preferences of foraging fish and decapods. The species composition of fish and decapods was more strongly related to location within the estuary than to habitat, and fish and decapod species composition responded on a larger landscape scale than invertebrate assemblages. Fish and decapod species richness and the size of ecologically and commercially important species, such as Dungeness crab (Cancer magister), English sole (Parophrys vetulus), or lingcod (Ophiodon elongatus), were not significantly related to habitat type.     

Emigration of juvenile Atlantic menhaden,Brevoortia tyrannus (Pisces: Clupeidae), from the York River estuary

The emigration of juvenile Atlantic menhaden,Brevoortia tyrannus (Latrobe), from the York River Estuary, Virginia, was studied during the years 1981 and 1982. Concurrent observations of menhaden catch, water temperature, and phytoplankton abundance suggested that the migration began in response to environmental events in the estuary. Juvenile menhaden appeared to begin their migration five days after the sustained onset of water temperatures below 24 °C. The temperature change was hypothesized as the proximate factor that initiates the migration. Coincident with the migrations, phytoplankton communities in the estuary bloomed, suggesting that the ultimate factor that initiates the migration may be the occurrence of sufficient food for the emigrating menhaden as they moved down and out of the estuary. Migration timing may have evolved as a mechanism to enhance the survival of migrating juvenile menhaden during a period of physiologic stress.     

Regional Correspondence in Habitat Occupancy by Gray Snapper (Lutjanus griseus) in Estuaries of the Southeastern United States

Reef fishes, such as gray snapper, support important recreational and commercial fisheries and use a variety of habitats throughout ontogeny. Gray snapper juveniles may be found in estuarine nursery areas, such as seagrass beds, or mangrove shorelines, while adults are most often found in deep channels and farther offshore, associated with hard-bottom habitats. Juvenile and subadult gray snapper were collected from 1996 through 2009 during long-term fishery-independent monitoring of several estuarine systems along the Gulf and Atlantic coasts of Florida. Indices of abundance and habitat suitability were constructed for gray snapper to determine size-specific relationships between abundance, habitat, and environmental conditions. Juvenile and subadult gray snapper were collected year-round only in the southernmost estuaries but were most common from July through December in all estuaries sampled. In addition to timing of estuarine occupancy, abundance varied with latitude; gray snapper were more frequently collected in warmer, southern estuaries. In general, gray snapper were most abundant in euhaline areas with a high percentage of submerged aquatic vegetation (SAV) and, in most cases, where overhanging shoreline vegetation was also present. Annual abundance varied over the sampling period, with some juvenile peaks in abundance translating to subadult peaks in subsequent years. Although strong correspondence between juvenile and subadult populations was not observed in all systems, long-term, broad-scale habitat selection patterns as described in this study are critical to more effectively assess populations of estuarine-dependent species.     

Fish assemblage stability over fifty years in the Lake Pontchartrain estuary; Comparisons among habitats using canonical correspondence analysis

We assessed fish assemblage stability over the last half century in Lake Pontchartrain, an environmentally degraded oligohaline estuary in southeastern Louisiana. Because assemblage instability over time has been consistently associated with severe habitat degradation, we attempted to determine whether fish assemblages in demersal, nearshore, and pelagic habitats exhibited change that was unrelated to natural fluctuations in environmental variables (e.g., assemblage changes between wet and dry periods). Collection data from three gear types (trawl, beach seine, and gill nets) and monthly environmental data (salinity, temperature, and Secchi depth) were compared for four collecting periods: 1954 (dry period), 1978 (wet period), 1996–1998 (wet period), and 1998–2000 (dry period). Canonical correspondence analysis (CCA) revealed that although the three environmental variables were significantly associated with the distribution and abundance patterns of fish assemblages in all habitats (with the exception of Secchi depth for pelagic samples), most fish assemblage change occurred among sampling periods (i.e., along a temporal gradient unrelated to changing environmental variables). Assemblage instability was the most pronounced for fishes collected by trawls from demersal habitats. A marked lack of cyclicity in the trawl data CCA diagram indicated a shift away from a baseline demersal assemblage of 50 yr ago. Centroid positions for the five most collected species indicated that three benthic fishes, Atlantic croaker (Micropogonias undulatus), spot (Leiostomus xanthurus), and hardhead catfish (Arius felis), were more dominant in past demersal assemblages (1954 and 1978). A different situation was shown for planktivorous species collected by trawls with bay anchovy (Anchoa mitchilli) becoming more dominant in recent assemblage and Gulf menhaden (Brevoortia patromus) remaining equally represented in assemblages over time. Changes in fish assemblages from nearshore (beach seine) and pelagic (gill net) habitats were more closely related to environmental fluctuations, though the CCA for beach seine data also indicated a decrease in the dominance ofM. undulatus and an increase in the proportion ofA. mitchilli over time. The reduced assemblage role of benthic fishes and the marked assemblage change indicated by trawl data suggest that over the last half century demersal habitats in Lake Pontchartrain have been impacted more by multiple anthropogenic stressors than nearshore or pelagic habitats.     

Spatial and temporal differences of Atlantic menhaden (Brevoortia tyrannus) recruitment across major drainages (1966–2004) of the Chesapeake Bay watershed

Atlantic menhaden (Brevoortia tyrannus) is well known for its commercial and ecological importance and has been historically declining in the Chesapeake Bay (Maryland), one of its principal nursery habitats along the eastern coast. Using data from the Striped Bass Seine Survey of the Maryland Department of Natural Resources (2003), we evaluated how the distribution of Atlantic menhaden has changed from 1966 to 2004 for 12 river drainages. We observed significant or marginally significant declines in 42% of the drainages, with drainages of the northern Bay showing the majority of those declines. Continued recruitment to several drainages of the Bay may partly explain why the adult spawning population is not declining. We determined if temporal changes in abundance were related to changes in salinity or water quality for five major drainages of the watershed. For one of these drainages, the Patuxent River, differences in productivity across sites largely explained differences in abundance. For the four remaining drainages, differences in recruitment could not be explained by productivity or salinity gradients. While reducing nitrogen loading and enhancing water clarity may improve Atlantic menhaden production, we suggest that the role of offshore processes on large-scale declines has been largely neglected and studies on larval ingression are necessary for further elucidation of spatial and temporal patterns of juvenile distribution in the Chesapeake Bay.     

Foraging by juvenile salmon in a restored estuarine wetland

The functional value of a restored estuarine wetland as a foraging area for juvenile chum salmon (Oncorhynchus keta) and fall chinook salmon (O. tshawytscha) was evaluated during the spring seaward migrations of each species in 1987 and 1988. During both years, fish foraged selectively. While temporarily residing in the restored wetland, both salmon selected primarily chironomid insects (midge larvae, pupae, and adults) over all other organisms considered available prey. A detritus-based food chain (detritus-chironomids-juvenile chum salmon or chinook salmon) suggests that the restored wetland provides productive foraging habitat for migrating juvenile chum and fall chinook salmon during their early residency in the estuary. However, the equivalency of foraging in restored or created estuarine wetlands compared to foraging in altered riverine or natural habitats remains untested.     

Seasonal Occurrence of Cownose Rays (Rhinoptera bonasus) in North Carolina’s Estuarine and Coastal Waters

The seasonal occurrence of cownose rays (Rhinoptera bonasus) within North Carolina’s estuarine and coastal waters was examined from aerial surveys conducted during 2004–2006. Generalized linear models were used to assess the influence of several variables (month, year, habitat type, sea surface temperature, and turbidity) on predicted counts of cownose rays. The spatial distributions of rays were compared by season, and differences in group size were tested as a function of season and habitat. Cownose ray data associated with the North Carolina Division of Marine Fisheries (NCDMF) fishery independent gill net sampling program in Pamlico Sound was also examined as a function of season and year, and compared with aerial observations. Rays immigrated into the region in mid-spring (April), dispersed throughout the estuary in the summer (June–August), and emigrated by late autumn (November). Predicted counts were highest in the spring (April, May) and autumn (September–November) for coastal habitats and highest in the summer for estuarine habitats. Predicted counts were also higher in the coastal region than estuarine and higher when sea surface temperatures were above average. Comparison of group size by habitat type revealed substantially larger group sizes in the coastal habitat than the estuarine. In addition, for the estuary, spring surveys had larger group sizes than summer surveys; for the coastal habitat, autumn group sizes were significantly larger than spring or summer group sizes. The NCDMF gill net sampling surveys indicated similar trends in monthly migration patterns as well as increased ray abundance in 2008 and 2009 compared with 2003–2007. These results suggest that North Carolina’s waters serve as important habitat during the seasonal migration of cownose rays, as well as during the summer when the species may utilize the estuarine region as a nursery and/or for foraging.     

Integrating Multiple Natural Tags to Link Migration Patterns and Resource Partitioning Across a Subtropical Estuarine Gradient

Establishing links between migration patterns and trophic dynamics is paramount to ecological studies investigating the functional role habitats provide to resident and transient species. Natural tags in fishes, such as otolith chemistry and tissue stable isotopes, can help reconstruct previous environmental and dietary histories, although these approaches are rarely combined. A novel multiproxy natural tag approach was developed to estimate immigration patterns of juvenile Atlantic croaker Micropogonias undulatus, across contrasting salinity gradients in three subtropical estuaries of the western Gulf of Mexico. Juvenile young-of-year Atlantic croaker were collected along a latitudinal gradient that included positive, neutral, and negative estuaries, based on physicochemical (temperature, salinity, dissolved element) and isotopic (δ¹⁵N and δ¹³C) parameters. Otolith elemental chronologies of Sr/Ca and Ba/Ca were used to classify migratory types within each estuary, while tissue-specific isotope ratios revealed time since recent (liver~weeks) and longer term (muscle~months) diet shifts. Nitrogen isotopes in both liver and muscle tissues were highly correlated, suggesting tissue equilibrium and estuarine residence of at least 3 months, with geographic δ¹⁵N gradients reflecting the magnitude of anthropogenic nutrient enrichment within each estuary. Differences in isotopic equilibrium of muscle-liver δ¹³C values and variation in marginal edge otolith Sr/Ca and Ba/Ca suggested recent shifts in carbon source and habitat utilization, reflecting individualized movement across seascapes and connectivity of habitat mosaics. The multiproxy approach presented here identified diverse migration patterns and linked feeding and movement on regional (inter-estuary), local (intra-estuary), and individual scales to improve our understanding of habitat function across estuarine gradients.     

Interannual and long-term variation in the nearshore fish community of the mesohaline Hudson River estuary

The detection of long-term shifts in species composition and spatial structuring of aquatic communities may be obscured by high levels of interannual variation. Estuarine fish communities are likely to exhibit high levels of variation owing to the influence of riverine forcing and the importance of anadromous and transient species, whose abundances may not be locally controlled. We describe patterns of interannual variation and long-term shifts in the nearshore fish community of the mesohaline Hudson River estuary based on 21 yr of beach seine sampling conducted annually between late August and mid November. Of the 60 species encountered, the most abundant were Atlantic silversides (Menidia menidia), striped bass (Morone saxatilis), white perch (Morone americana), American shad (Alosa sapidissima), and blueback herring (Alosa aestivalis). Relationships between annual community composition and seasonal flow and temperature regimes were examined with canonical correspondence analysis. Annual variation was most closely correlated with river flows in the 3-mo period preceding fish sampling, indicating a persistent effect of environmental conditions on community structure. Despite significant interannual variation in composition, longer-term trends in community structure were observed. These included declines in catch rates of freshwater and estuarine species and a dramatic increase in the catch of Atlantic silversides, an annual marine species. Associated with these changes were declines in community diversity and increased compositional variation. These results indicate that analyses of temporal changes in community structure need to account for the multiple time scales under which forcing factors and community composition vary.     

The distribution of shallow water juvenile fishes in an urban estuary: The effects of manmade structures in the lower Hudson River

The objective of this study was to determine what effect, if any, large pile-supported platforms (piers) have on the habitat distribution and abundance of juvenile fishes. Trapping techniques were used in 1993 and 1994 under piers, in pile fields, and in open-water habitat types in shallow areas (<5 m) in the lower Hudson River estuary (40°44′N, 70°01′W). Nearly 1500 fishes, mostly juveniles, representing 24 species were collected in 1865 trap-days from May through October in the 2-yr study. The presence of relatively large numbers of young-of-the-year (YOY) fish during both years lends support to the idea that shallow areas in the lower Hudson River estuary currently function as nursery habitats for a variety of fishes. Two seasonal assemblages were apparent, but their composition varied somewhat between years.Microgadus tomcod andPseudopleuronectes americanus YOY dominated an early summer assemblage (May–July) while large numbers of YOYMorone saxatilis were collected as part of a late summer assemblage (August–September). The effects of habitat type on fish assemblage structure were significant during both years. Fish abundance and species richness were typically low under piers; YOY fishes were rare andAnguilla rostrata accounted for a large proportion of the total catch. In contrast, YOY fishes dominated collections at pile field and open-water stations, where abundance and species richness were high. These results indicate that habitat quality under the platforms of large piers (>20,000 m²) is probably poor for YOY fishes when compared with nearby pile field and open-water habitat types.