Numerical study of three-dimensional shelf circulation on the Scotian Shelf using a shelf circulation model

A numerical shelf circulation model was developed for the Scotian Shelf, using a nested-grid setup consisting of a three-dimensional baroclinic inner model embedded inside a two-dimensional barotropic outer model. The shelf circulation model is based on the Princeton Ocean Model and driven by three-hourly atmospheric forcing provided by a numerical weather forecast model and by tidal forcing specified at the inner model's open boundaries based on pre-calculated tidal harmonic constants. The outer model simulates the depth-mean circulation forced by wind and atmospheric pressure fields over the northwest Atlantic Ocean with a horizontal resolution of 1/12°. The inner model simulates the three-dimensional circulation over the Gulf of St. Lawrence, the Scotian Shelf, and the adjacent slope with a horizontal resolution of 1/16°. The performance of the shelf circulation model is assessed by comparing model results with oceanographic observations made along the Atlantic coast of Nova Scotia and in the vicinity of Sable Island (on the Scotian Shelf) during two periods: October 2000–March 2001 and April–June 2002. Analysis of model results on Sable Island Bank indicates that tidal currents account for as much as ∼80% of the total variance of near-bottom currents, and currents driven by local winds account for ∼30% of the variance of the non-tidal near-bottom currents. Shelf waves generated remotely by winds and propagating into the region also play an important role in the near-bottom circulation on the bank.     

Variability in invasion risk for ballast water exchange on the Scotian Shelf of eastern Canada

A semi-quantitative risk assessment model for dispersion of ballast water organisms in shelf seas is applied to the Scotian Shelf region of eastern Canada. The ballast water exchange process is simulated as the dispersion of tracer released into the surface layer of an ocean circulation model of the region. Circulation model variability is driven by wind stress from a cyclical year of forcing representing climatological storminess. Dispersion metrics related to invasion risk are developed and incorporated into a risk equation that computes the relative overall risk of invasion for ballast water exchange segments along vessel tracks crossing the shelf. Three hundred and sixty dispersion simulations are done for each segment of each of six tracks. Because the flow fields represent climatological variability in shelf circulation, the application of the risk assessment model captures the expected variability in invasion risk. Model results indicate that more than an order of magnitude variation in risk can exist along a given vessel track, and that tracks with offshelf segments provide a lower risk option compared to onshelf tracks. The model provides quantitative guidance to regulators regarding what is an acceptable trip diversion and can aid in numerous other management decisions.     

Effect of stratification on tidal circulation over the Scotian Shelf and Gulf of St. Lawrence: a numerical study using a three-dimensional shelf circulation model

A three-dimensional shelf circulation model is used to examine the effect of seasonal changes in water-column stratification on the tidal circulation over the Scotian Shelf and Gulf of St. Lawrence. The model is driven by tidal forcing specified at the model’s lateral open boundaries in terms of tidal sea surface elevations and depth-averaged currents for five major tidal constituents (M₂, N₂, S₂, K₁, and O₁). Three numerical experiments are conducted to determine the influence of baroclinic pressure gradients and changes in vertical mixing, both associated with stratification, on the seasonal variation of tidal circulation over the study region. The model is initialized with climatological hydrographic fields and integrated for 16 months in each experiment. Model results from the last 12 months are analyzed to determine the dominant semidiurnal and diurnal tidal components, M₂ and K₁. Model results suggest that the seasonal variation in the water-column stratification affects the M₂ tidal circulation most strongly over the shelf break and over the deep waters off the Scotian Shelf (through the development of baroclinic pressure gradients) and along Northumberland Strait in the Gulf of St. Lawrence (through changes in vertical mixing and bottom stress). For the K₁ constituent, the baroclinic pressure gradient and vertical mixing have opposing effects on the tidal circulation over several areas of the study region, while near the bottom, vertical mixing appears to play only a small role in the tidal circulation.     

Numerical study of circulation on the inner Amazon Shelf

We studied the circulation on the coastal domain of the Amazon Shelf by applying the hydrodynamic module of the estuarine and coastal ocean model and sediment transport. The first barotropic experiment aimed to explain the major bathymetric effects on tides and those generated by anisotropy in sediment distribution. We analyzed the continental shelf response of barotropic tides under realistic bottom stress parametrization (C _d ), considering sediment granulometry obtained from a faciologic map, where river mud deposits and reworked sediments areas are well distinguished, among others classes of sediments. Very low C _d values were set in the fluid mud regions off the Amapá coast (1.0 10^???4), in contrast to values around 3.5 10^???3 for coarser sediment regions off the Pará coast. Three-dimensional experiments represented the Amazon River discharge and trade winds, combined to barotropic tide influences and induced vertical mixing. The quasiresonant response of the Amazon Shelf to the M₂ tide acts on the local hydrodynamics by increasing tidal admittance, along with tidal forcing at the shelf break and extensive fluid mud regions. Harmonic analysis of modeled currents agreed well with the analysis of the AMASSEDS observational data set. Tidal-induced vertical shear provided strong homogenization of threshold waters, which are subject to a kind of hydraulic control due to the topographic steepness. Ahead of the hydraulic jump, the low-salinity plume is disconnected from the bottom and acquires negative vorticity, turning southeastward. Tides act as a generator mechanism and topography, via hydraulic control, acts as a maintainer mechanism for the low-salinity frontal zone positioning. Tidally induced southeastward plume fate is overwhelmed by northwestward trade winds so that they, along with background circulation, probably play the most important role on the plume fate and variability over the Amazon Shelf.     

Process study of coastal circulation over the inner Scotian Shelf using a nested-grid ocean circulation model, with a special emphasis on the storm-induced circulation during tropical storm Alberto in 2006

This study examines main physical processes affecting the three-dimensional (3D) circulation and hydrographic distributions over the inner Scotian Shelf (ISS) in June and July 2006 using a nested-grid coastal ocean circulation modeling system known as the NCOPS-LB. The nested-grid system has five relocatable downscaling submodels, with the outermost submodel of a coarse horizontal resolution of (1/12)° for simulating storm surges and barotropic shelf waves over the Eastern Canadian shelf and the innermost submodel of a fine resolution of ～180 m for simulating the 3D coastal circulation and hydrography over Lunenburg Bay of Nova Scotia in the default setup. The NCOPS-LB is driven by meteorological and astronomical forcing and used to study the storm-induced circulation over the ISS during tropical storm Alberto. Model results demonstrate that the coastal circulation and hydrographic distributions over the ISS are affected significantly by tides, local wind forcing, and remotely generated coastal waves during the study period.     

Study on subtidal circulation and variability in the Gulf of St. Lawrence,Scotian Shelf,and Gulf of Maine using a nested-grid shelf circulation model

This paper examines the subtidal circulation and associated variability in the Gulf of St. Lawrence, the Scotian Shelf, and the Gulf of Maine (GSL-SS-GOM) in 1988–2004 based on results produced by a nested-grid shelf circulation model. The model has a fine-resolution child model (～ (1/12)°) embedded inside a coarse-resolution parent model (～ (1/4)°) of the northwest Atlantic. The combination of the semi-prognostic method and the spectral nudging method is used to reduce the model seasonal bias and drift. The child model reproduces the general features of the observed circulation and hydrography over the study region during the study period. The child model results demonstrate that the time-mean circulation in the GSL is affected by the time-mean atmospheric forcing and inflow through the Strait of Belle Isle. The temporal variability in atmospheric forcing affects the outflow through western Cabot Strait, which in turn affects the transport of the Nova Scotian Current and the gulf-wide cyclonic circulation in the GOM. The simulated seasonal variability of salinity in the top 30 m of the GSL-SS-GOM is mainly affected by the equatorward advection of low-salinity waters from the lower St. Lawrence Estuary to the GOM through the Scotian Shelf. The simulated intraseasonal variability of circulation in the GSL is affected by the variability in the estuarine circulation in response to the temporal variability in atmospheric forcing. On the Scotian Shelf, the intraseasonal variability is mainly driven by the variability of wind forcing and mesoscale and nonlinear dynamics over the shelf break and slope region. The interannual variability in the simulated temperature and salinity are spatially coherent in the intermediate waters in the GSL, which is caused partially by the local response to atmospheric variability and partially by variabilities over the southern Newfoundland Shelf that enter the GSL through the eastern Cabot Strait. By comparison, on the Scotian Shelf, the interannual variability of simulated circulation is affected by anomalies produced by the nonlinear dynamics which are advected equatorwards by the shelf break jet.     

Stable Pb isotope ratios in aerosols, precipitation, and size-fractionated particulate matter in the Gulf of Maine, Scotian Shelf, and Labrador Sea

Measurements of Pb isotopes in aerosols, precipitation, and size-fractionated particulate matter from the Gulf of Maine, Scotian Shelf and Labrador Sea are used to investigate the source of Pb. The ²⁰⁶Pb/²⁰⁷Pb ratio in aerosols and precipitation collected at New Castle, NH suggests that anthropogenic Pb is a mixture of US and Canadian sources. ²⁰⁶Pb/²⁰⁷Pb ratios in >53 μm particulate matter from the Gulf of Maine and Scotian Shelf slope waters are consistent with contaminant Pb inputs predominantly from US and Canadian sources, while in shelf waters ²⁰⁶Pb/²⁰⁷Pb ratios in >0.4 μm and >53 μm particles are consistent with a mixture of US and Canadian sources, as well as Pb associated with resuspended surface sediment. ²⁰⁶Pb/²⁰⁷Pb ratios in particulate matter (>0.4 μm, 10-53 μm, and >53 μm) from Labrador Sea surface waters range from 1.165 to 1.211 and are a mixture of Pb derived from ore compositions consistent with Broken Hill, Australia and southeast Missouri, US sources.     

Seasonal patterns of ammonium regeneration from size-fractionated microheterotrophs

Ammonium regeneration by size-fractionated plankton was measured for 1 year at a coastal station in the shallow well-mixed waters of the western English Channel. Rates of ammonium regeneration in the <200 μm fraction varied from 0.6 to 27 nmol N l⁻¹ h⁻¹. On the seasonal scale, these rates were relatively low (<7 nmol N l⁻¹ h⁻¹) in autumn and winter, increased steadily from March to attain a maximum (27 nmol N l⁻¹ h⁻¹) at the end of May and thereafter decreased steadily to the seasonal minimum in December. This pattern is distinctly different from that observed in deep well-mixed waters where the peak ammonium regeneration occurs in summer (Le Corre et al., 1996, Journal of Plankton Research, 18, 355–370). Total ammonium regenerated in a year by the microheterotrophs was 15 g N m⁻², equivalent to about 60% of the total nitrogen uptake. Microplankton (200–15 μm) accounted for about 50% of the regeneration measured between early spring and late summer. Percent contribution of nanoplankton to total ammonium regeneration varied considerably between the seasons, from very high (83–88%) levels in winter to very low (2–13%) levels in summer. Contribution by picoplankton (<1 μm) was high (20–45%) in summer but was less than 20% in other seasons. Ammonium regeneration in micro- and nanoplankton fractions was mainly associated with ciliates and in the picoplankton fraction with bacteria. Macrozooplankton dynamics appears to regulate ammonium regeneration by ciliates and bacteria. Low macrozooplankton biomass in spring may favour a high growth of ciliates and an associated high in ammonium regeneration. In summer, the increase in macrozooplankton may exert a grazing pressure on ciliates. This, coupled with the fact that most of the flagellates are autotrophs, would, in turn, lower the grazing pressure on the bacteria, thus favouring their development and increasing the importance of their role in ammonium regeneration. This situation, where the macrozooplankton dynamics apparently regulates ammonium regeneration in nano- and picoplankton fractions, appears to be different from that in deep well-mixed waters. Here, the relative contribution of ciliates and bacteria to ammonium regeneration shows little variation with an increase in macrozooplankton biomass.     

Effects of Scotian shelf natural gas condensate on the mummichog

The 96h LC₅₀ of the water soluble fraction (WSF) of natural gas condensate from the Sable Is., N.S. area to Fundulus heteroclitus was between 4 and 5 μg · ml⁻¹ naphthalene equivalents (initial concentration). Behavioural responses in the fish to sub-lethal concentrations of WSF were similar to those recorded for crude and fuel oils. Induction of the hepatic mixed function oxidase enzyme enthoxyresorufin O-de-ethylase (EROD) in sexually immature fish occurred at WSF concentrations below the LC₅₀, but during the prespawning period no induction occurred. EROD activity in unexposed fish showed seasonal variation consistent with differences in its inducibility.     

Seasonal and spatial variation of floc size,settling velocity,and density on the inner Adriatic Shelf (Italy)

Measurements of floc sizes, floc settling velocities and effective floc densities were obtained at three locations on the inner Adriatic shelf (Italy) in February and May/June 2003 using the in situ size and settling column tripod INSSECT (Mikkelsen et al., 2004. INSSECT—an instrument platform for investigating floc properties close to the seabed. Limnology and Oceanography: Methods 2, 226–236). Measurements were carried out in a water depth of 8–12 m and the final data set comprised 2491 flocs. Relationships of observed floc size vs. floc settling velocity and floc size vs. effective floc density were similar to those observed by other authors working in similar settings. The raw data showed significant scatter around mean trends, indicating that only a relatively small fraction of variability in floc settling velocity and effective floc density was explained by floc size. For bin-averaged data, however, much of the variability in settling velocity and density was explained by floc size. On the Adriatic shelf mean floc settling velocities varied from 0.48 to 1.35 mm s⁻¹, while mean effective floc densities varied from 8.1 to 27.5 kg m⁻³; within the range reported by other authors. Analysis of variance showed significant differences in floc settling velocities, effective floc densities and floc size in space and time (seasons). Thus, floc settling velocities, effective floc densities and floc size on the inner Adriatic shelf could not be characterized by a common mean, but were more appropriately characterized by a range of values, varying in time and space.     

Natural and anthropogenic nitrogen uptake by bloom-forming macroalgae

The frequency and duration of macroalgal blooms have increased in many coastal waters over the past several decades. We used field surveys and laboratory culturing experiments to examine the nitrogen content and delta(15)N values of Ulva and Gracilaria, two bloom-forming algal genera in Narragansett Bay, RI (USA). The northern end of this bay is densely populated with large sewage treatment plant nitrogen inputs; the southern end is more lightly populated and opens to the Atlantic Ocean. Field-collected Ulva varied in delta(15)N among sites, but with two exceptions had delta(15)N above 10 per thousand, reflecting a significant component of heavy anthropogenic N. This variation was not correlated with a north-south gradient. Both Ulva and Gracilaria cultured in water from across Narragansett Bay also had high signals (delta(15)N= approximately 14-17 per thousand and 8-12 per thousand, respectively). These results indicate that inputs of anthropogenic N can have far-reaching impacts throughout estuaries.     

Primary productivity and nitrogen uptake in the subsurface chlorophyll maximum on the Eastern Agulhas Bank

Measurements of primary productivity and nitrogen uptake using ¹⁵N-labelled N0₃, NH₄ and urea were performed on the eastern Agulhas Bank during January 1992. Primary productivity normalized to biomass (P^B) was exceptionally large for stations characterized by shallow mixing depths. In addition, P^B was not well correlated with incident light. Exclusion of those stations with large PB ratios yielded a light utilization index of 1.43 ± 0.48. Primary productivity was largely regeneration based as indicated by photic zone integrals of the f-ratio (x = 0.17). Ammonium uptake and regeneration were in approximate balance over the photic zone. However, there was a tendency for vertical displacement of these fluxes at some stations. On average, half the total new production occurred in the Chl_max layer. New production was N0₃ limited in the upper photic zone (100−25% light depths) though was independent of N0₃ in the thermocline. Photic zone integrals of new production showed a moderately good relationship (r² = 0.74) with surface N0₃ concentration.Possible mechanisms behind the formation and persistence of the subsurface Chl_max are considered. In situ growth is recognized as important; by virtue of the significantly larger f-ratios at the Chl_max (x = 0.20) compared to the upper mixed layer (x = 0.12), though not to the exclusion of other mechanisms. Herbivory and concomitant NH₄ release and inhibition of N0₃ uptake is proposed as a possible control over the vertical positioning of the Chl_max. The application of these results to the estimation of regional primary productivity and new production are discussed. Simple models based on the light utilization index and incident light are not promising though the data set is too small to offer any firm conclusions in this regard. The potential exists for estimating new production directly from near-surface N03 concentration but will need to be substantiated in further cruises.     

Seasonal nitrogen and phosphorus dynamics during benthic clam and suspended mussel cultivation

Effects of suspended mussel and infaunal clam cultivation on sediment characteristics, and benthic organic and inorganic nitrogen and phosphorus fluxes were compared in a shallow coastal lagoon. The two species had different impacts on sediment features, but both created “hotspots” of nutrient fluxes with annual N and P regeneration rates being 4.9 and 13.5 (mussel) and 4.5 and 14.9 (clams) fold greater than those of unfarmed control sediments. Mussel farming also caused considerable nutrient regeneration within the water column with the mussel ropes contributing ∼25% of total inorganic N and P production and at times dominating the sediments (e.g. 95% of SRP production in summer and 45% of DIN production in winter). Such nutrient regeneration rates seriously question the proposal that suspension-feeding bivalves act as a eutrophication buffer, especially during summer when nutrient regeneration rates are maximal, but other nutrient sources (freshwater run-off and unfarmed sediments) are at their lowest.     

Recent carbon and nitrogen uptake rates of phytoplankton in Bering Strait and the Chukchi Sea

Cruises to Bering Strait and the Chukchi Sea in US waters from late June in 2002 to early September in 2004 and the Russian–American Long-term Census of the Arctic (RUSALCA) research cruise in 2004 covered all major water masses and contributed to a better understanding of the regional physics, nutrient dynamics, and biological systems. The integrated concentration of the high nitrate pool in the central Chukchi Sea was greater in this study than in previous studies, although the highest nitrate concentration (∼22 μM) in the Anadyr Water mass passing through the western side of Bering Strait was consistent with prior observations. The chlorophyll-a concentrations near the western side of the Diomede Islands ranged from 200 to 400 mg chl-a m⁻² and the range in the central Chukchi Sea was 200–500 mg chl-a m⁻² for the 2002–2004 Alpha Helix (HX) cruises. Chlorophyll-a concentrations for the 2004 RUSALCA cruise were lower than those from previous studies. The mean annual primary production of phytoplankton from this study, using a ¹³C–¹⁵N dual-isotope technique, was 55 g C m⁻² for the whole Chukchi Sea and 145 g C m⁻² for the plume of Anadyr–Bering Shelf Water in the central Chukchi Sea. In contrast, the averages of annual total nitrogen production were 13.9 g N m⁻² (S.D.=±16.2 g N m⁻²) and 33.8 g N m⁻² (S.D.=±14.1 g N m⁻²) for the Chukchi Sea and the plume, respectively. These carbon and nitrogen production rates of phytoplankton were consistently two-or three-fold lower than those from previous studies. We suggest that the lower rates in this study, and consequently more unused nitrate in the water column, were caused by lower phytoplankton biomass in the Bering Strait and the Chukchi Sea. However, we do not know if the lower rate of production from this study is a general decreasing trend or simply temporal variations in the Chukchi Sea, since temporal and geographical variations are substantially large and presently unpredictable.     

Inorganic carbon and nutrient fluxes on the Arctic Shelf

Historic data from the Russian-American Hydrochemical Atlas of Arctic Ocean together with data from the TRANSDRIFT II 1994 and TUNDRA 1994 cruises have been used to assess the spatial and inter-annual variability of carbon and nutrient fluxes, as well as air–sea CO₂ exchange in the Laptev and western East Siberian Seas during the summer season. Budget computations using summer data of dissolved inorganic phosphate (DIP), dissolved inorganic nitrogen (DIN) and dissolved inorganic carbon (DIC) gives that the Laptev Sea shelf is a net sink of DIP and DIN of 2.5×10⁶, 23.2×10⁶ mol d⁻¹, respectively, while it is a net source of DIC (excluding air–sea exchange) of 1249×10⁶ mol d⁻¹. In the East Siberian Seas the budget computations give 0.5×10⁶, −11.4×10⁶ and −173×10⁶ mol d⁻¹ (minus being a sink) for DIP, DIN, and DIC, respectively. In summers, the Laptev Sea Shelf is net autotrophic while the East-Siberian Sea Shelf is net heterotrophic, and both systems are weak net denitrifying. The Laptev Sea Shelf takes up 2.1 mmol CO₂ m⁻² d⁻¹ from atmosphere, whereas the western part of the East-Siberian Sea Shelf loose 0.3 mmol CO₂ m⁻² d⁻¹ to the atmosphere. The variability of DIP, DIN and DIC fluxes during summer in the different regions of the Laptev and East Siberian Seas depends on bottom topography, river runoff, exchange with surrounding seas and wind field.     

Circulation and connectivity on the Australian North West Shelf

Australia's North West Shelf supports a diverse range of tropical habitats and marine communities, as well as being Australia's most economically significant marine region. This study is the first attempt to describe the ocean circulation across the North West Shelf on time-scales from hours to years, and space scales from 10 km over the entire shelf to 1 km in a selected focus area around the Dampier Archipelago. A series of nested circulation models have been developed with forcing by realistic winds, tides, and larger scale oceanographic conditions (taken from a global circulation model). Dispersion and connectivity patterns have also been estimated over the shelf using particle-tracking techniques. The simulations covered a period of more than 6 years, allowing the tidal, seasonal, and interannual characteristics to be investigated. Model results confirm that the instantaneous current patterns are strongly dominated by the barotropic tide and its spring–neap cycle. However, longer term transports over the inner- and mid-shelf were mainly controlled by wind-driven flow, which followed the seasonal switch from summer monsoon winds to southeasterly trades in winter. Results were shown to be relatively insensitive to adjustable model parameters and sub-model structures. However, model performance was strongly dependent on the quality of the forcing fields. Connectivity results have been represented in terms of a comprehensive set of statistical probabilities that have been made available online (http://www.per.marine.csiro.au/connie). The potential regional-scale connectivity between coral reefs on the North West Shelf has been used to illustrate the approach.     

Ocean circulation on the North Australian Shelf

The ocean circulation on Australia's Northern Shelf is dominated by the Monsoon and influenced by large-scale interannual variability. These driving forces exert an ocean circulation that influences the deep Timor Sea Passage of the Indonesian Throughflow, the circulation on the Timor and Arafura Shelves and, further downstream, the Leeuwin Current. Seasonal maxima of northeastward (southwestward) volume transports on the shelf are almost symmetric and exceed 10⁶ m³/s in February (June). The associated seasonal cycle of vertical upwelling from June to August south of 8.5°S and between 124°E and 137.5°E exceeds 1.5×10⁶ m³/s across 40 m depth. During El Niño events, combined anomalies from the seasonal means of high regional wind stresses and low inter-ocean pressure gradients double the northeastward volume transport on the North Australian Shelf to 1.5×10⁶ m³/s which accounts for 20% of the total depth-integrated transport across 124°E and reduce the total transport of the Indonesian Throughflow. Variability of heat content on the shelf is largely determined by Pacific and Indian Ocean equatorial wind stress anomalies with some contribution from local wind stress forcing.     

Modulation of near-inertial motions on the Mississippi-Alabama Shelf

Ocean Dynamics - In this study, we diagnose the time variability and vertical structure of the high- and low-frequency motions on the Mississippi-Alabama Shelf as observed with a bottom-mounted...