Modeling sensitive elasmobranch habitats

Basic information on the distribution and habitat preferences of ecologically important species is essential for their management and protection. In the Mediterranean Sea there is increasing concern over elasmobranch species because their biological (ecological) characteristics make them highly vulnerable to fishing pressure. Their removal could affect the structure and function of marine ecosystems, inducing changes in trophic interactions at the community level due to the selective elimination of predators or prey species, competitors and species replacement. In this study Bayesian hierarchical spatial models are used to map the sensitive habitats of the three most caught elasmobranch species (Galeus melastomus, Scyliorhinus canicula, Etmopterus spinax) in the western Mediterranean Sea, based on fishery-dependent bottom trawl data. Results show that habitats associated with hard substrata and sandy beds, mainly in deep waters and with a high seabed gradient, have a greater probability registering the presence of the studied species than those associated with muddy shallow waters. Temperature and chlorophyll-α concentration show a negative relationship with S. canicula occurrence. Our results identify some of the sensitive habitats for elasmobranchs in the western Mediterranean Sea (GSA06 South), providing essential and easy-to-use interpretation tools, such as predictive distribution maps, with the final aim of improving management and conservation of these vulnerable species.     

Ichthyoplankton in a southern african surf zone: Nursery area for the postlarvae of estuarine associated fish species?

The surf zone ichthyoplankton of Swartvlei Bay was studied between February 1986 and June 1987, with particular emphasis on its potential role as a nursery area for estuarine associated marine fish species. Larvae and/or postlarvae of 16 families were identified from the surf zone, with the Gobiidae, Soleidae, Sparidae and Mugilidae comprising 85·7% of all teleosts sampled. The postlarvae of several taxa (including the six most common species), which utilize the Swartvlei estuary as a juvenile nursery area, were abundant in the surf zone. Conversely, species which are common in nearshore marine waters as juveniles and adults, but seldom enter estuaries, totalled less than 8% of the surf zone ichthyoplankton assemblage.Larval and postlarval densities peaked during summer when water temperatures exceeded 19°C and the estuary mouth was open. Concentrations of ichthyoplankton were highest at those sampling stations closest to the estuary mouth during the summer period. Diel changes in total catches revealed no significant difference between day and night densities; but of the four major taxa, the Mugilidae and Sparidae tended to be more abundant during the day, the Gobiidae at night and the Soleidae showed no distinct pattern. Results from a 24 h sampling session indicated that tidal phase may also be important in governing ichthyoplankton abundance in the surf zone.     

Latitudinal changes (6°S-20°N) of summer ciliate abundance and species compositions in surface waters from the Java Sea to the South China Sea

Ciliates play a curial role in energy transfer from pico-and nano-phytoplankton to mesozooplankton in marine ecosystems. In order to visualize their geographical distributions from the Java Sea to the South China Sea (6°S to 20°N), the authors investigated the ciliate abundance and species composition in surface waters during May 18 to 27 of 2010. The ciliate abundance decreased latitudinally from 3 080 ind./L (～6°S) to 40 ind./L (～3°N), and then increased to 1 180 ind./L (～16°N) at the end of the survey. A total of 22 ciliates belonging to 15 genera were identified with the tintinnids accounted for 50% (11 species); and the species number showed a same spatial change as the ciliate abundance. Moreover, the Strombidium occupied over 50% of total ciliate abundance in most stations and Mesodinium and Tintinnopsis contributed to about 18.7% and 11.4%, respectively. In particular, our results indicate that the geographical changes in ciliate abundance were positively regulated by larger nano-and micro-phytoplankton biomass, rather than smaller pico-phytoplankton in the investigated waters.     

Variation in Surf-zone Fish Community Structure Across a Wave-exposure Gradient

Fluctuations in various attributes of a surf-zone fish community were examined by beach seining at a series of sites spanning a wave-exposure gradient in the Saldanha Bay–Langebaan Lagoon system, on the South African west coast. During April 1994, 24 species, totalling 25 676 individuals and 434 kg, were captured. Three teleosts,Atherina breviceps, Liza richardsoniiandPsammogobius knysnaensis, dominated numerically, while three elasmobranchs,Rhinobatos annulatus, Mustelus mustelusandMyliobatis aquila, dominated the biomass. Elasmobranchs displayed no discernible distribution patterns. Two important trends were, however, evident in the teleost catches: overall teleost abundance (mean density) increased markedly as wave exposure decreased; and highest species richness and diversity, and lowest dominance were both recorded at intermediate levels of exposure. A positive relationship between fish size and exposure was also evident for at least two of the species. These trends were attributed primarily to the availability and abundance of suitable food resources, and to physical disturbance introduced by breaking waves.     

Climate variability and its effects on major fisheries in Korea

Understanding in climate effects on marine ecosystem is essential to utilize, predict, and conserve marine living resources in the 21s t century. In this review paper, we summariz ed t h e past history and current status of Korean fisheries as well as the changes in climate and oceanographic phenomena since the 1960s. Ocean ecosystems in Korean waters can be divided into three, based on the marine commercial fish catches; the demersal ecosystem in the Yellow Sea and the East China Sea, the pelagic ecosystem in the Tsushima Warm Current from the East China Sea to the East/Japan Sea, and the demersal ecosystem in the northern part of the East/Japan Sea. Through the interdisciplinary retrospective analysis using available fisheries, oceanographic, and meteorological information in three important fish communities, the trend patterns in major commercial catches and the relationship between climate/ environmental variability and responses of fish populations were identified. Much evidence revealed that marine ecosystems, including the fish community in Korean waters, has been seriously affected by oceanographic changes, and each species has responded differently. In general, species diversity is lessening, and mean trophic level of each ecosystem has decreased during the last 3~4 decades. Future changes in fisheries due to global warming are also considered for major fisheries and aquaculture in Korean waters.     

On the dynamics of demersal fish assemblages off Namibia in the 1990s

Demersal fish surveys carried out off Namibia from 1990 to 2000 were used to study the dynamics of demersal fish assemblages on the shelf and upper slope. The study was performed on each major assemblage, i.e. over the shelf (100–300 m deep) and the slope (300–600 m). Changes in size spectrum, diversity, species composition and trends in abundance of the dominating species were analysed. The most evident changes were those related to overall abundance and diversity of the slope assemblage.     

Long-term trends in the structure of eastern Adriatic littoral fish assemblages: Consequences for fisheries management

Long-term interannual changes in abundance, biomass, diversity and structure of littoral fish assemblages were examined between 1993 and 2009 by experimental trammel net fishing up to six times per year, within the warm period - May to September, at multiple areas along the eastern Adriatic coast with the aim of testing for the consistency of patterns of change across a large spatial scale (∼600 km). The results revealed spatially consistent increasing trends of total fish abundance and biomass growing at an average rate of 15 and 14% per year, respectively. Of the diversity indices analysed, the same pattern of variability was observed for Shannon diversity, while Pielou evenness and average taxonomic distinctness measures Δ^∗ and Δ⁺ showed spatial variability with no obvious temporal trends. Multivariate fish assemblage structure underwent a directional change displaying a similar pattern through time for all the areas. The structural change in fish assemblages generally involved most of the species present in trammel net catches. A large pool of fish species responsible for producing the temporal pattern of assemblage change was relatively different in each of the areas reflecting a large geographic range covered by the study. An analysis of 4 fish species (Symphodus tinca, Pagellus erythrinus, Mullus surmuletus, Scorpaena porcus) common to each of the study areas as the ones driving the temporal change indicated that there were clear increasing trends of their mean catches across the years at all the study areas. A common pattern among time trajectories across the spatial scale studied implies that the factor affecting the littoral fish assemblages is not localised but regional in nature. As an underlying factor having the potential to induce such widespread and consistent improvements in littoral fish assemblages, a more restrictive artisanal fishery management that has progressively been put in place during the study period, is suggested and discussed.     

Fine‐scale patterns in the day,night and crepuscular composition of a temperate reef fish assemblage

The distribution, abundance and composition of marine fish assemblages are influenced by changes in behaviour and movement associated with the diel cycle. The majority of studies exploring day–night differences have demonstrated that there is a greater abundance and diversity of fishes during diurnal compared with nocturnal hours, and that fish assemblage composition varies with time of day or night. We investigated fine‐scale (hourly) diel cycles in the composition and relative abundance of temperate reef fishes using unbaited remote underwater video systems. We observed short crepuscular changeover periods with the hours around dawn and dusk sharing many species, some of which are nocturnal and others diurnal. Diurnal surveys recorded a greater number of individuals (16,990) and species (70) than nocturnal surveys (1053 individuals and 19 species). There was a clear difference between the diurnal assemblage, which was characterized by benthic invertivores, and the nocturnal assemblage composition, which contained zooplanktivores and generalist feeders. Within the diurnal period the hourly temporal variation was relatively homogenous, indicating that standardization of diurnal sampling to a particular time of day may not be necessary.     

Decadal changes in fish assemblages in waters near the Ieodo ocean research station (East China Sea) in relation to climate change from 1984 to 2010

We compiled and analyzed past time-series data to evaluate changes in oceanographic conditions and marine ecosystems near the Ieodo ocean research station (IORS) in the East China Sea (N 31°15??C33°45??, E 124°15??C127°45??) in relation to longterm changes in climate and global warming. The environment data we used was a depth-specific time-series of temperature and salinity for the water columns at 175 fixed stations along 22 oceanographic lines in Korean waters, based on bimonthly measurements since 1961 taken by the National Fisheries Research & Development Institute. As an indicator for the ecosystem status of the waters off Ieodo, we analyzed species composition in biomass of fishes caught by Korean fishing vessels in the waters near the IORS (1984?C2010) and summarized the data in relation to the environmental changes using canonical correspondence analysis (CCA). To detect step changes in the time-series of environmental factors, we applied a sequential t-test analysis of regime shift. Correspondence analysis detected a major shift in fish assemblage structure between 1990 and 1993: the dominant species was filefish during 1981?C1992, but chub mackerel during 1992?C2007. This shift in fish assemblage structure seemed to be related to the well-established 1989 regime shift in the North Pacific, which was confirmed again with respect to temperature in the Yellow Sea and the Korea Strait (but not in the waters off the IORS). In overall from 1984 to 2010, salinity was more important than water temperature in CCA, implying that the fluctuation of the Tsushima warm current is a most important force driving the long-term changes in fish assemblage structure in the waters off the IORS. Further multidisciplinary researches are required to identify oceanographic and biological processes that link climate-driven physical changes to fish recruitment and habitat range fluctuations.     

Depth zonation and bathymetric trends of deep-sea megafaunal scavengers of the Hawaiian Islands

The deep sea has been shown to exhibit strong depth zonation in species composition and abundance. Examination of these patterns can offer ecological insight into how organisms adapt and respond to changing environmental parameters that co-occur with depth. Here we provide the first tropical study on bathymetric zonation and other depth-related trends (size, abundance, and species richness) spanning shelf to abyssal depths of scavenging megafauna. Baited time-lapse free-vehicle cameras were used to examine the deep-sea benthic and demersal scavenging communities of the Hawaiian Islands, an area for which the biology and ecology have remained poorly studied below 2000 m. Twenty-two deployments ranging in depth from 250 to 4783 m yielded 37 taxa attracted to bait, including the first known occurrence of the family Zoarcidae in the Hawaiian Islands. Cluster analysis of Bray–Curtis similarity of species peak abundance (n_max) revealed four main faunal zones (250–500, 1000, 1500–3000, and ?4000 m) with significant separation (ANOSIM, global R=0.907, p=0.001) between designated depth groups. A major faunal break was identified at the 500–1000 m transition where species turnover was greatest, coinciding with the location of the local oxygen minimum zone. Dominance in species assemblage shifted from decapod crustaceans to teleosts moving from shallow to deeper faunal zones. Significant size differences in total length with depth were found for two of the four fish species examined. A logarithmic decline was observed in scavenger relative abundance with depth. Evidence of interaction between scavenging species was also noted between Synaphobranchus affinis and Neolithodes sp. (competition) and Histiobranchus sp. and aristeid shrimp (predation), suggesting that interactions between scavengers could influence indices of abundance generated from baited camera data.     

The influence of an extreme drought event in the fish community of a southern Europe temperate estuary

Between 2003 and 2006, a severe drought occurred throughout the Mondego River catchment's area, inducing lower freshwater flows into the estuary. As a consequence, both 2004 and 2005 were considered as extreme drought events. From June 2003 to June 2006, the fish assemblage of the Mondego Estuary was sampled monthly in five stations during the night, using a 2 m beam trawl. Fish abundance was standardized as the number of individuals per 1000 m² per season and the assemblage was analyzed based on ecological guilds: estuarine residents, marine juveniles, marine adventitious, freshwater, catadromous and marine species that use the estuary as a nursery area. A total of 42 species belonging to 23 families were identified, with estuarine residents and nursery species dominating the fish community. Variations in the fish community were assessed using non-metric MDS, being defined as three distinct periods: summer and autumn 2003, 2004/2005 and winter and summer 2006. The main drought-induced effects detected were the depletion of freshwater species and an increase in marine adventitious in 2004/2005, due to an extended intrusion of seawater inside the estuary and a significant reduction in abundance during the driest period of estuarine resident species. Nevertheless, from the management point of view, it could be stated that although some variations occurred due to environmental stress, the main core of the Mondego Estuary fish community remained relatively unchanged.     

黄河口及邻近水域小型鳀鲱鱼类数量分布及其与环境因子的关系

小型鳀鲱鱼类多为浮游生物食性种类;又是多种高营养层次鱼类的饵料生物;作为生态系统中的重要类群;其数量分布对多种生物均具有重要影响。本文根据2013年6月、8月、10月和2014年2月、4月、5月在黄河口及邻近水域进行的渔业资源和环境调查数据;分析了该海域小型鳀鲱鱼类资源数量分布特征;并用广义可加模型研究了其数量分布与时空和环境因子等之间的关系。黄河口及邻近水域小型鳀鲱鱼类相对资源量呈现明显的季节变化;夏、秋季相对资源量明显高于冬、春季。小型鳀鲱鱼类相对资源量具有明显的空间变化;且在不同月份呈现不同的空间分布格局;在4月、5月、6月小型鳀鲱鱼类主要分布于近岸水域;在8月、10月小型鳀鲱鱼类分布外移且范围扩大。GAM分析表明;影响黄河口及邻近水域小型鳀鲱鱼类相对资源量时空分布的主要环境因子包括表层盐度、表层水温、水深和浮游植物丰度等。小型鳀鲱鱼类相对资源量随表层盐度的升高呈现升高的趋势;在盐度达到30时;小型鳀鲱鱼类相对资源量处于最高水平。随表层水温的升高相对资源量有升高趋势;当表层水温达到15℃后;小型鳀鲱鱼类相对资源量增加趋势减缓且丰度较大。小型鳀鲱鱼类相对资源量随浮游植物丰度的增大总体呈现上升趋势;而随水深的变化呈现先降低后升高的趋势。黄河口及邻近水域小型鳀鲱鱼类相对资源量的时空变化与鳀鲱鱼类产卵、索饵和越冬洄游有关;受到季节变化、黄河径流变化以及黄河调水调沙等引起的海洋环境因子变动的影响。     

Influence of summer conditions on the larval fish assemblage in the eastern coast of Tunisia (Ionian Sea,Southern Mediterranean)

The structure of the summer larval fish assemblage off the eastern coast of Tunisia and its relation to environmental conditions was studied, from ichthyoplankton samples taken during a survey conducted between 23rd June and 9th July 2008. A total of 68 larval fish taxa were identified, 52 to species level. The taxonomic composition and abundance of the larval fish assemblage showed high spatial heterogeneity. Mesoscale hydrographic features, such as eddies, seem to play an important role in the spatial distribution of fish larvae in the area, enhancing concentration and retention. The larval fish assemblage was dominated by the small pelagic species Sardinella aurita (26.6% of the total larval fish abundance), followed by Engraulis encrasicolus (22.6%), Spicara spp. (8.6%) and Mullus barbatus (6.8%). Shannon–Weaver index (H′) ranged between 0 and 2.62. The highest values were found offshore, at 95 miles east of Sousse, over depths around 250 m. The diversity was higher in this region as a result of transport by currents and retention by eddies. It has also been shown that the eastern coast of Tunisia is a spawning ground for the tuna species Auxis rochei, Thunnus thynnus and Thunnus alalunga. Larvae of mesopelagic fishes represented 5.46% of the total abundance, with Cyclothone braueri, Ceratoscopelus maderensis and Lampanyctus crocodilus being the most important species. Canonical correspondence analysis (CCA) indicated that depth was the most important environmental factor in explaining species distribution.     

Antioxidant efficiency and detoxification enzymes in spotted dogfish Scyliorhinus canicula

Although elasmobranchs are widely distributed species, commonly found on sandy, gravely or muddy bottoms, several biological aspects of their metabolism still remain poorly investigated. In this work the efficiency of antioxidant system and detoxification enzymes were investigated in the coastal spotted dogfish Scyliorhinus canicula and in the red mullet Mullus barbatus for comparison with a teleost species.Organisms were sampled during a bottom trawl survey and analyzed for the biotransformation activity (EROD), levels of metallothioneins, catalase, glutathione S-transferases and total oxyradical scavenging capacity (TOSC) toward peroxyl radicals and hydroxyl radicals.EROD activity in the elasmobranchs was more than one order of magnitude lower than in the red mullets, while similar levels of metallothioneins were measured in these species. S. canicula showed significantly lower antioxidant enzymes and a more reduced efficiency in neutralizing ^√OH; on the other hand the scavenging capability toward ROO^√ was comparable in S. canicula and M. barbatus.     

What role do beds of submerged macrophytes play in structuring estuarine fish assemblages? Lessons from a warm-temperate South African estuary

Habitat variability is one of the factors influencing species richness within estuarine systems, and a loss of habitat can result in a restructuring of the estuarine ichthyofaunal assemblage, particularly if these conditions persist over long time periods. The potential effects of the loss of extensive submerged macrophyte beds (Ruppia cirrhosa and Potamogeton pectinatus) on an estuarine fish assemblage were investigated through an analysis of a long-term seine net catch dataset from the temporarily open/closed East Kleinemonde Estuary, South Africa. Catch data for a 12-year period, encompassing six years of macrophyte presence and six years of macrophyte senescence, indicated that the loss of this habitat did not influence species richness but changes in the relative abundance of certain species were evident. A shift in dominance from vegetation-associated species to those associated with sandy environments (e.g. members of the family Mugilidae) was observed. However, species wholly dependent on macrophytes such as the critically endangered estuarine pipefish Syngnathus watermeyeri were only recorded during years when macrophyte beds were present, while vegetation-associated species such as the sparid Rhabdosargus holubi persisted at lower levels of relative abundance. The reduced abundance of all vegetation-associated fish species during years of macrophyte senescence was probably reflective of declining food resources resulting from the loss of macrophyte beds and/or increased vulnerability to predation. Submerged beds of aquatic plants are therefore important habitats within temporarily open/closed estuaries, South Africa’s dominant estuary type.     

Occurrence and feeding of three shark species,Carcharhinus brachyurus,C. obscurus and Sphyrna zygaena,on the Eastern Cape coast of South Africa

The shark species Carcharhinus brachyurus, C. obscurus and Sphyrna zygaena, which attain more than 2 m when adult, occur in coastal waters of the Southern Cape as juveniles. They use these coastal waters as nursery areas and their relative abundance there varies through the year, possibly because of seasonally varying oceanographic conditions. Adult C. brachyurus occur in the same geographic area but usually deeper, although there is some overlap in juvenile and adult depth ranges. Adult C. obscurus prefer the warmer subtropical and tropical waters north of the study area. Adult S. zygaena are found over deep reefs at the edge of the continental shelf. There was considerable dietary overlap between the three species, the prey of all three being dominated by small schooling fish, such as pilchard, and squid. For the three species, animals of total length >2 m took larger prey, such as elasmobranchs, with greater frequency, although they continued to prey on squid and schooling fish. It is postulated that the nursery areas are in the study area because of the abundance of food there, and that avoidance of cannibalism would be enhanced by the use of such nurseries.     

The impact of river flooding and high flow on the demersal fish assemblages of the freshwater-dominated Great Fish Estuary,South Africa

Freshwater inflow has a strong impact on the biological, chemical and physical characteristics of estuaries, which in turn affect the distribution and abundance of estuarine organisms. Increased climatic variability associated with climate change is predicated to modify precipitation patterns, which will likely intensify floods in estuaries. The demersal fish assemblage of the freshwater-dominated Great Fish Estuary, South Africa, was sampled using beam trawls, monthly, from December 2013 to November 2014. The first six months of the study were characterised by river flooding and high flow, with estuarine conditions found only in the mouth region; this was followed by six months of intermediate flow, with estuarine conditions recorded up to 10 km from the mouth. River flooding and subsequent reduced salinity resulted in a decrease in species richness and abundances of fishes in the estuary, with only two estuarine species (Glossogobius callidus and Psammogobius knysnaensis) and one marine migrant (Solea turbynei) recorded following river flooding (201 m³ s^?1), in January 2014. The greatest species richness and abundances among both marine and estuarine fishes were recorded during intermediate flow conditions. We conclude that although freshwater inflow into estuaries is important for the nursery function of these systems, flooding—especially in freshwater-dominated estuaries—may cause a temporary decline in the abundance of most marine and estuarine fish species, including important bentho-pelagic marine migrant fishery species, such as Argyrosomus japonicus and Pomadasys commersonnii.     

Climate variability and the Icelandic marine ecosystem

This paper describes the main features of the Icelandic marine ecosystem and its response to climate variations during the 20th century. The physical oceanographic character and faunal composition in the southern and western parts of the Icelandic marine ecosystem are different from those in the northern and the eastern areas. The former areas are more or less continuously bathed by warm and saline Atlantic water while the latter are more variable and influenced by Atlantic, Arctic and even Polar water masses to different degrees. Mean annual primary production is higher in the Atlantic water than in the more variable waters north and east of Iceland, and higher closer to land than farther offshore. Similarly, zooplankton production is generally higher in the Atlantic water than in the waters north and east of Iceland. The main spawning grounds of most of the exploited fish stocks are in the Atlantic water south of the country while nursery grounds are off the north coast. In the recent years the total catch of fish and invertebrates has been in the range of 1.6–2.4 million ton. Capelin (Mallotus villosus) is the most important pelagic stock and cod (Gadus morhua) is by far the most important demersal fish stock. Whales are an important component of the Icelandic marine ecosystem, and Icelandic waters are an important habitat for some of the largest seabird populations in the Northeast Atlantic.In the waters to the north and east of Iceland, available information suggests the existence of a simple bottom-up controlled food chain from phytoplankton through Calanus, capelin and to cod. Less is known about the structure of the more complex southern part of the ecosystem. The Icelandic marine ecosystem is highly sensitive to climate variations as demonstrated by abundance and distribution changes of many species during the warm period in the 1930s, the cold period in the late 1960s and warming observed during the recent years. Some of these are highlighted in the paper.     

Comparison of,and the effects of altered freshwater inflow on,fish assemblages of two contrasting South African estuaries: the cool-temperate Olifants and the warm-temperate Breede

This study compares the fish assemblages of the permanently open cool-temperate Olifants and warm-temperate Breede estuaries on the west and south coasts of South Africa respectively, and their responses to altered freshwater flows. Both estuaries have experienced a >35% reduction in mean annual runoff (MAR) from a historical reference condition to the present day with a >60% reduction possible under future flow scenarios. With the exception of species that have both marine and estuarine breeding populations, the Olifants Estuary fish assemblage has experienced an overall 20% decrease in abundance from reference (pristine state) to the present day and will gradually decline to 55% of reference with a predicted future 60% reduction in MAR. Consequently, future reductions in flow are likely to result in the Olifants Estuary progressing towards a low biomass, low diversity, marine-dominated system. In contrast, reduced freshwater flows in the Breede Estuary are likely to experience an overall reduction in the abundance of species that breed only in estuaries, and in freshwater and catadromous species. Collectively, entirely estuarine-dependent fish will increase in abundance, but considered individually some important exploited species such as Argyrosomus japonicus and Pomadasys commersonnii will collapse to 50% of historical numbers once there has been a 64% reduction in MAR. Overall, fish abundance in the estuary has increased by 6% from reference to the present day and is likely to increase to 115% of reference with future reductions in flow. Some species with a preference for fresh and brackish water will be all but lost from the system, but overall diversity is likely to increase with the range expansion of warm-temperate and subtropical marine species westward. In all, the fish assemblage of the Breede Estuary will experience a gradual change from a relatively high-diversity, low-abundance, freshwater rich system under historical flow conditions to a high diversity, high-abundance, marine-dominated system with future reductions in flow.     

Temporal and spatial distributions of larval fish assemblages in the Lima estuary (Portugal)

The Lima estuary (NW Portugal) is at the end of an international watershed, whose potential role as a spawning and nursery habitat for local fish populations has not been previously examined. To address this knowledge gap, fortnightly plankton surveys were conducted between April 2002 and April 2004. A total of 12,903 larvae, belonging to 20 families and 50 taxa were collected, with a mean abundance of 8 individuals per 100 m³. Gobiidae was the most abundant family comprising 71% of the total catch, followed by Clupeidae with 12% of the total. The top six abundant taxa (Pomatoschistus spp., Sardina pilchardus, Ammodytes tobianus, unidentified Clupeidae, Symphodus melops and Solea senegalensis) represented 91% of the total catch. Fish larvae showed a seasonal trend with abundances increasing during spring and summer. Diversity was generally low (H′ = 0.65) with high dominance of very few taxa. Near the ocean, the larval fish assemblage was more diverse due to the presence of marine species. In the lower estuary Channel zone, abundance was lower than in the two upstream salt marsh zones (North and South zones) and no statistical differences in abundance or diversity values were found within the latter zones. ANOSIM results demonstrated seasonal differences in the species composition, mainly during the second winter period which was typified by a pelagic species A. tobianus. The community in the Channel zone was more diverse in comparison with the other zones, which were highly dominated by the most abundant species. The spatial and temporal trends of the most abundant species were typical for Iberian estuaries, with the exception of the low abundance of anchovy larvae and the unusually high numbers and frequency of S. pilchardus, usually mentioned as accidental in estuarine systems. Overall results suggest that the Lima estuary larval fish assemblage has a strong seasonality and affinity to the salt marsh zones. It seems that spawning seasonality controlled the presence of temporary estuarine residents, while environmental aspects controlled the general abundance trend of the resident species.