Development of a fish-based index to assess the ecological quality of transitional waters: The case of French estuaries

The Water Framework Directive requires the assessment of the ecological status of transitional waters considering the fish component. An original methodology, based on a pressure-impact approach, was established to develop a multimetric fish-based index to characterize the ecological quality of French estuaries. An index of contamination, based on the chemical pollution affecting aquatic systems, was used as a proxy of anthropogenic pressure. The fish metric selection was based on their response to disturbances tested via statistical models (generalized linear models) taking into account sampling strategy and estuarine features. Four metrics, for which discriminating responses to level of pressure were demonstrated, were retained to constitute the estuarine multimetric fish index. This new tool appeared particularly relevant to detect the contamination effects on fish communities in estuaries. It could help managers to take decisions in order to maintain or reach the good status required by the Water Framework Directive for 2015.     

A zone-specific fish-based biotic index as a management tool for the Zeeschelde estuary (Belgium)

Fish-based indices monitor changes in surface waters and are a valuable aid in communication by summarising complex information about the environment (Harrison and Whitfield, 2004). A zone-specific fish-based multimetric estuarine index of biotic integrity (Z-EBI) was developed based on a 13 year time series of fish surveys from the Zeeschelde estuary (Belgium). Sites were pre-classified using indicators of anthropogenic impact. Metrics showing a monotone response with pressure classes were selected for further analysis. Thresholds for the good ecological potential (GEP) were defined from references. A modified trisection was applied for the other thresholds. The Z-EBI is defined by the average of the metric scores calculated over a one year period and translated into an ecological quality ratio (EQR). The indices integrate structural and functional qualities of the estuarine fish communities. The Z-EBI performances were successfully validated for habitat degradation in the various habitat zones.     

Efficacy of adapted estuarine fish-based multimetric indices as tools for evaluating ecological status of the marine environment

The assessment of ecological status of marine fish communities required by the marine strategy framework directive (MSFD) emphasises the need for fish-based ecological indices in marine waters. In this study we adapt five estuarine multimetric indices to the marine environment and apply them in three types of substrates, analysing the metrics responsible for the obtained patterns of ecological status. The results show inefficiency of the community degradation index (CDI) and the biological health index (BHI) in ecological status assessment and disagreement between the estuarine biotic integrity index (EBI), the estuarine fish community index (EFCI) and the transitional fish classification index (TFCI). Analysis of individual metrics suggests lack of representativeness and consideration for the particularities of each substrate’s typical fish communities. None of the tested indices were efficient on the marine environment, urging the need for new marine indices that account for differences between types of substrate and depth.     

Ecological quality assessment of small estuaries from the Portuguese coast based on benthic macroinvertebrate assemblages indices

Benthic macroinvertebrates communities are the most consistently emphasized biotic component of aquatic ecosystems and are one of the biological indicators required for assessment by the European Water Framework Directive. In this context, several indices based on these communities have been developed in order to assess ecological quality of estuarine systems. In the present work we used AMBI, M-AMBI, BENTIX and BAT to distinguish ecological status of five small estuarine systems of the Portuguese south and southwest coasts. Although indices outputs did not differ between systems and sampling seasons, results indicated that the metrics in which these indices are based could differentiate community structures as a result of two main gradients that force these communities: the natural variability, and the anthropogenic impact.     

Seasonal variability of benthic indices: an approach to test the applicability of different indices for ecosystem quality assessment

In recent studies, several benthic biological indices were developed or used to assess the ecological quality status of marine environments. In the present study the seasonal variability of several univariate and multimetric indices was studied on a monthly scale (September 2000 until May 2002) in different areas of the North Sea such as the German Bight, the Oyster Ground and the Dogger Bank. The stations were chosen to reflect a gradient in the hydrographic regime, temperature and organic matter supply. The seasonal variability was highest for the univariate indices such as the Shannon–Wiener Index and the Hurlbert Index. Thus, due to sensitivity to recruitment the corresponding ecological status ranged from ‘good’ to ‘poor’ depending on the season. For the multimetric indices such as the AMBI or the BQI the seasonal variability and the corresponding ecological status were low. The results are discussed concerning possible consequences for ecological quality assessment especially related to the Water Framework Directive (WFD).     

Quality assessment of benthic macroinvertebrates under the scope of WFD using BAT, the Benthic Assessment Tool

Assessing the health of ecosystems has become a focal point among researchers worldwide. Recently, the European Water Framework Directive intensified the development of approaches to assess ecosystems’ ecological quality. The Benthic Assessment Tool (BAT) is a multimetric approach to evaluate condition of subtidal soft bottom macroinvertebrates of coastal and transitional waters. The effects of anthropogenic disturbances on benthic macroinvertebrate communities, from 1990 to 2006, allowed testing BAT performance in Mondego estuary (Portugal). The method was able to detect decrease on ecological quality, induced essentially by eutrophication and physical disturbances, and follow communities’ subsequent recovery. It evidenced, nevertheless, some limitations associated with the unstable nature of estuaries. The ecological classification of key species in the community and the balance expected between ecological groups of estuarine communities had great influence in the final ecological assessment. Shortcomings of the method were discussed in the light of its suitability for assessing transitional waters’ condition.     

Influence of macrofauna long-term natural variability on benthic indices used in ecological quality assessment

An essential prerequisite for the assessment of the ecological quality of marine ecosystems is the understanding of the natural variability and its effect on the performance of quality indices. This study is focused on the long-term natural variability of diversity, biotic and multimetric indices by using long-term macrofauna data of a coastal area in the southern North Sea (1978-2005). The univariate and most biotic and multimetric indices respond significantly on specific natural disturbance events such as cold winters, but the strength of response varied between indices as well as between events. As a result, the ecological quality status can decrease over a range of 3 (out of 5) classification units. The overall ecological quality was good to high, but an increase of indices occurred from the mid 1980s onwards due to changes in the climate regime. This long-term variability has to be considered within ecological quality assessment schemes.     

Developing multimetric indices for monitoring ecological restoration progress in salt marshes

Effective tools for monitoring the status of ecological restoration projects are critical for the management of restoration programs. Such tools must integrate disparate data comprised of multiple variables that describe restoration status, including the condition of environmental stressors, landscape connectivity, ecosystem resilience, and ecological structure and function, while communicating these concepts effectively to a wide range of stakeholders. In this paper we describe the process of constructing multimetric indices (MMIs) for monitoring restoration status for restoration projects currently underway on the eastern coast of Saudi Arabia. During this process, an initial suite of measurements is filtered for response and sensitivity to ecosystem stressors, eliminating measurements that provide little information and reducing future monitoring efforts. The retained measurements are rescaled into comparable domain metrics and assembled into MMIs. The MMIs are presented in terms of established restoration theories, including restoration trajectory and restoration endpoint targets.     

The use of diatom assemblages as ecological indicators in highly stratified estuaries and evaluation of existing diatom indices

Diatom indices are used to evaluate the ecological status of rivers but they have been rarely applied in estuaries. This study aimed to identify the diatom species indicating the main environmental gradients and pressures in a highly stratified estuary; and to evaluate the applicability of existing freshwater diatom indices. Marine influence due to salt-wedge intrusion and sea water mixing appeared as the main factor affecting diatom community. Three diatom assemblages were identified: indicators of riverine conditions (without marine influence), indicators of estuarine conditions (heterogeneous conditions with higher conductivities due to marine influence) and those specifically indicating well-established salt-wedge situations. Nowadays, the main human pressure affecting diatom community in the Ebro Estuary is the hydrological alteration resulting from flow regulation and abstraction. Several limitations were encountered in the application of diatom indices (e.g. inverse response with nutrients; ecologically important species not considered). Therefore, their use in estuaries should be done cautiously.     

Response of single benthic metrics and multi-metric methods to anthropogenic pressure gradients, in five distinct European coastal and transitional ecosystems

In recent times many benthic indices have been proposed to assess the ecological quality of marine waters worldwide. In this study we compared single metrics and multi-metric methods to assess coastal and transitional benthic status along human pressure gradients in five distinct environments across Europe: Varna bay and lake (Bulgaria), Lesina lagoon (Italy), Mondego estuary (Portugal), Basque coast (Spain) and Oslofjord (Norway). Hence, 13 single metrics (abundance, number of taxa, and several diversity and sensitivity indices) and eight of the most common indices used within the European Water Framework Directive (WFD) for benthic assessment were selected: index of size spectra (ISS), Benthic assessment tool (BAT), Norwegian quality index (NQI), Multivariate AMBI (M-AMBI), Benthic quality index (BQI), (Benthic ecosystem quality index (BEQI), Benthic index based on taxonomic sufficiency (BITS), and infaunal quality index (IQI). Within each system, sampling sites were ordered in an increasing pressure gradient according to a preliminary classification based on professional judgement. The different indices are largely consistent in their response to pressure gradient, except in some particular cases (i.e. BITS, in all cases, or ISS when a low number of individuals is present). Inconsistencies between indicator responses were most pronounced in transitional waters (i.e. IQI, BEQI), highlighting the difficulties of the generic application of indicators to all marine, estuarine and lagoonal environments. However, some of the single (i.e. ecological groups approach, diversity, richness) and multi-metric methods (i.e. BAT, M-AMBI, NQI) were able to detect such gradients both in transitional and coastal environments, being these multi-metric methods more consistent in the detection than single indices. This study highlights the importance of survey design and good reference conditions for some indicators. The agreement observed between different methodologies and their ability to detect quality trends across distinct environments constitutes a promising result for the implementation of the WFD’s monitoring plans. Moreover, these results have management implications, regarding the dangers of misclassification, uncertainty in the assessment, use of conflicting indices, and testing and validation of indices.     

Use of multimetric indices to classify estuaries with different hydromorphological characteristics and different levels of human pressure

The assessment of estuaries based on benthic communities is widely used to determine impacts caused by human pressure and is one of the required tools for the implementation of the European Water Framework Directive (WFD). Our study compared multimetric approaches (B-IBI and TICOR) to assess the benthic condition of three Portuguese estuaries (Mondego, Tejo, and Mira rivers) with different levels of natural and human induced stress. Benthic community condition was classified into quality status categories of the WFD and compared for consistency with a priori status categories based upon physical-chemical criteria. Both multimetric indices discriminated equally well between locations classified above or below the good status category but were unable to provide good separation between other quality classes (high/good, moderate, poor/bad). Metrics included in these indices are greatly affected by natural stress and we recommend the development of habitat-specific thresholds to increase the discriminatory ability of any benthic condition index.     

Opportunistic macroalgae metrics for transitional waters. Testing tools to assess ecological quality status in Portugal

Macroalgae communities constitute one of the ecological quality elements for the evaluation of the ecological quality status (EQS) of coastal and transitional waters, required to implement the WFD. While these algae are natural components of estuarine systems and play important roles in several estuarine processes, macroalgal blooms are of ecological concern because they can reduce the habitat quality. Several works are being carried out to set standard methods for monitoring macroalgae blooms, in order to develop tools to derive EQS based upon this biological quality element. The aim of this paper is to apply the methodology described by Scanlan et al. [Scanlan, C.M., Foden, J., Wells, E., Best, M.A., 2007. The monitoring of opportunistic macroalgal blooms for the water framework directive. Marine Pollution Bulletin 55, 162–171] to a series of data assembled in the south arm of the Mondego estuary (Atlantic coast of Portugal) considering two different ecological situations. Additionally, an alternative assessment method intended to be used when no biomass data are available was also tested. In general, both options captured the inter-annual variations in accordance with the system evolution. Option 2, less expensive and time-consuming, allowed an EQS evaluation with accurate results when biomass data were not available. The results suggest that sampling should be carried out from April to June.     

A Marine Biotic Index to Establish the Ecological Quality of Soft-Bottom Benthos Within European Estuarine and Coastal Environments

In this paper, a marine Biotic Index (BI) for soft-bottom benthos of European estuarine and coastal environments is proposed. This is derived from the proportions of individual abundance in five ecological groups, which are related to the degree of sensitivity/tolerance to an environmental stress gradient. The main difference with previously published indices is the use of a simple formula that produces a continuous Biotic Coefficient (BC) – which makes it more suitable for statistical analysis, in opposition with previous discreet biotic indices – not affected by subjectivity. Relationships between this coefficient and a complementary BI with several environmental variables are discussed. Finally, a validation of the proposed index is made with data from systems affected by recent human disturbances, showing that different anthropogenic changes in the environment can be detected through the use of this BI.     

Ecological status in the Ligurian Sea: the effect of coastline urbanisation and the importance of proper reference sites

The assessment of the ecological status, as required by the Water Framework Directive (WFD), plays an important role in coastal zone management, but only a small number of ecological indices are applicable on rocky bottoms. In this study, we apply a previously defined ecological quality index based on the cartography of littoral and upper-sublittoral rocky-shore communities (CARLIT), based on the sensitivity of algae dominated communities to anthropogenic impacts along a moderate urban gradient. We also apply this index in four Marine Protected Areas (MPAs), proposed as reference sites at a regional scale. After comparing the outputs with water variables and other quality indices, we can affirm that (1) the CARLIT index is suitable to detect different kinds of anthropogenic pressures, that (2) the choice of proper reference sites is a focal point in the fulfilment of the WFD (Water Framework Directive) and that (3) historical data are important to define reference conditions and the degradation of ecological status.     

Effective methods for assessing ecological quality in intertidal soft-sediment habitats

Impacts of anthropogenic pollution on marine ecosystems are being addressed by legislation to protect and restore coastal and transitional waters. A range of biological measures have been investigated for their ability to indicate anthropogenic disturbance in subtidal soft-sediment habitats, but little work to date has focussed in intertidal habitats. This study investigated the sensitivity of communities, individual taxa, diversity indices and biotic indices to nutrient and organic enrichment in intertidal soft-sediment habitats. Variation in macrofaunal communities was more strongly associated with anthropogenic stressors than with natural environmental variation. Two multimetric indices, M-AMBI and IQI, were more closely associated with nutrient and organic pollution than the AMBI and ITI indices. Intertidal monitoring based on existing monitoring tools offers a cost effective alternative to subtidal monitoring and has potential to form the basis for an ecosystem level approach.     

Measuring the ecological integrity of an industrial district in the Amazon estuary, Brazil

The aim of the present study is to provide information on the ecological integrity of an industrial district located in the estuary of Pará River (Amazon estuary), by applying a selection of fish based multimetric indices of ecosystem integrity: Abundance Biomass Comparation (ABC); Biological Health Index; Estuarine Fish Community, Transitional Fish Classification and Estuarine Biotic Integrity Indexes. To evaluate the impacts of the industrial area and cargo terminal, three areas were considered: Zone 1, (maximum impact), Zone 2 (median risk) and Zone 3 (reference area). All the biological indices used were considered to be excellent indicators of the ecological integrity of the different sectors of the study area and were especially effective for the demonstration of the critical alterations of the fish community of Zone 1 and Zone 2. The simultaneous use of different indices family, with different assumptions, did strengthen the results enhancing the confidence in the diagnostic.     

Comprehensive assessment of heavy metal contamination in sediment of the Pearl River Estuary and adjacent shelf

Total metal concentrations (Cr, Ni, Cu, Zn, and Pb), acid volatile sulfide and simultaneously extracted metals (AVS-SEM), and heavy metal fractionation were used to assess the heavy metals contamination status and ecological risk in the sediments of the Pearl River Estuary (PRE) and adjacent shelf. Elevated concentrations at estuarine sites and lower concentrations at adjacent shelf sites are observed, especially for Cu and Zn. Within the PRE, the concentration of heavy metals in the western shore was mostly higher than that in the middle shore. The metals from anthropogenic sources mainly occur in the labile fraction and may be taken up by organisms as the environmental parameters change. A combination of total metal concentrations, metal contamination index and sequential extraction analysis is necessary to get the comprehensive information on the baseline, anthropogenic discharge and bioavailability of heavy metals.     

Evaluation of sediment contamination in the Red Sea coastal area combining multiple pollution indices and multivariate statistical techniques

In the recent years,the Red Sea coast of Yemen has been severely affected by intensive anthropogenic activities.The current study constitutes a thorough inquiry to evaluate the extent of heavy metals pollution in Yemen's Red Sea coast sediment and identifies the possible sources of pollution.The concentrations of five metals(copper(Cu),zinc(Zn),cadmium(Cd),lead(Pb),and nickel(Ni))collected from nine sites along the Red Sea coast of Yemen were assessed using an atomic absorption spectrophotometer(ASS).Sediment quality indices,such as the sediment quality guidelines(SQGs),potential ecological risk(RI),contamination factor(CF),pollution load index(PLI),geoaccumulation index(Igeo),and modified degree of contamination(mCd)were computed.In addition,multivariate statistical techniques(principal component analysis(PCA),hierarchical cluster analysis,and Pearson's correlation analysis)were applied to identify the potential sources of metals.The mean concentrations of Cu,Zn,Cd,Pb,and Ni were 51.3,61.9,4.02,9.9,and 33.4 mg/kg dry wt,respectively.The spatial distribution revealed that the metals concentrations were high at the middle zone and low southward of Hodeida city.According to the SQGs,the adverse biological effects of metals were occasionally associated with Cu and Cd,frequently associated with Ni,and not expected to occur with Zn and Pb.The RI indicated that the sediment of the studied sites pose low(RI<50)to considerable(100≤RI<200)ecological risk.The mean effect range-median quotient(M-ERM-Q)indicated that the combination of the studied metals had the toxicity probability of 21%at all studied sites.Igeo and CF indicated that the metals concentrations were in the descending order of:Zn>Ni>Pb>Cd>Cu,whereas the PLI and mCd indicated that Ras Isa(Site 5)and Urj village(Site 6)were the most polluted sites.PCA,cluster analysis,and correlation analysis found that Cd,Pb,and Ni mostly originated from anthropogenic sources while Cu and Zn were mainly derived from natural sources.Thus,it is evident that the intensive anthropogenic activities had negative influence on metals accumulation in the sediment of the Red Sea coast of Yemen leading to detrimental effects to the whole ecosystem.These comprehensive findings provide valuable information and data for future monitoring studies regarding heavy metals pollution and sediment quality at the Red Sea coast of Yemen.     

Influence of oyster culture practices and environmental conditions on the ecological status of intertidal mudflats in the Pertuis Charentais (SW France): a multi-index approach

The ecological quality status (EcoQ) of intertidal mudflats constrained by Pacific oyster farming was assessed by single (H’, AMBI, BENTIX and BOPA) and multimetric (M-AMBI and average score) index approaches in the Pertuis Charentais (SW France). Fifteen sampling stations were monitored seasonally for sedimentological features and macrozoobenthos in 2004. Sediments affected by oyster biodeposits showed organic matter enrichment, and sediments from off-bottom culture sites had higher organic matter contents and lower redox potentials than sediments from on-bottom culture sites. Biotic indices consistently registered responses of macrozoobenthos to organic enrichment but there was only partial agreement between single index-derived EcoQs. The average score was better than M-AMBI and single indices for determining EcoQs. Accordingly, oyster farming alters intertidal macrozoobenthic assemblages moderately, and off-bottom cultures cause more disturbance than on-bottom cultures. Hydrodynamics and seasons may interact with culture practices in smothering/strengthening biodeposition-mediated effects through dispersal/accumulation of biodeposits.     

The European Water Framework Directive 2000/60/EC in the evaluation of the ecological status of watercourses. Case study: the river Chienti (central Apennines,Italy)

The quality of the river Chienti (eastern‐central Apennines, Italy) has been evaluated according to the Water Framework Directive 2000/60/EC, taking into consideration both biotic (animal and vegetable) and chemical parameters. In studying the biotic component, two indices were used: the E.B.I, Extended Biotic Index (version adapted to the Italian rivers), based on macroinvertebrates, and the EPI‐D, the Eutrophication and/or Pollution Index, based on diatoms. For both macroinvertebrates and diatoms, two samplings were conducted, one in June and the other in October 2003. Instead, according to the Italian Law 152/99 the chemical and bacteriological analyses were conducted monthly for the entire year. The results of biomonitoring and chemical‐bacteriological analyses unanimously demonstrated a good ecological situation for the upper section of the Chienti, though the situation tends to worsen as the river continues its descent and undergoes increased anthropogenic pressure. Data obtained were correlated with Spearman's coefficients and principal component analysis. Both statistical calculations showed clear, direct correlation between the two biotic indices and an inverse correlation between these and the chemical and bacteriological parameters. However, a few differences of judgement that emerged among the various indices highlight the importance of using them simultaneously in order to obtain a more accurate diagnosis of the ecological status of the watercourses.