Dynamics of the Oder river plume in the Southern Baltic Sea: satellite data and numerical modelling

The Oder river discharge into the Pomeranian Bight of the Baltic Sea was investigated in a combined study using satellite data, numerical modelling and shipborne measurements. The aim was to understand the dynamical processes forming the freshwater distribution patterns during the prevailing winds. From an analysis of typical distribution patterns of the river discharge in relation to the main wind directions and in comparison to seasonal wind statistics, the two main transport directions were determined. The prevailing westerly winds produce an onshore transport and a downwind coastal jet which transports the river water along the Polish coast, in certain cases over a distance of 300 km to the Gdansk Bay. During a period of stable westerly winds in June 1994, the calculated time scale for a water transport over 250 km corresponded to the observed time of 12 d. In spring, the period of maximum river runoff, easterly winds dominate and transport occurs along the German coast into the Arkona Sea. The river water is guided by upwelling processes in front of the Polish coast. During occasional north-easterly winds stable plumes form in front of the Swine river mouth; this occurred in May 1991 for several days. The numerical model showed that the stability of the plume is caused by an interaction between the alignment of the coast, the large-scale circulation in the north, the buoyancy of the freshwater and the Coriolis effect. The underlying anticyclonic eddy is indicated by warm rings in a high resolution Landsat Thematic Mapper scene. From the different datasets the range of the spatial and temporal scales of a stable plume were determined. The volume varied between 0.14 and 0.9 km³, and the suspended matter and chlorophyll load between 1120 and 7200 t and 2.8 and 18 t, respectively. These values are important for ecological budget calculations in turnover process studies.     

Submesoscale eddies in Peter the Great Bay of the Japan/East Sea in winter

Ocean Dynamics - Cold-core (T < 0 °C) domes of dense water σθ > 27.24 kg/m3 were observed in the near-bottom layer at the...     

A numerical study of island wake generated by an elliptical tidal flow

An idealized numerical study of the influence of a tidal flow around an island has been undertaken with ROMS. The study focusses on coastal island wakes which are mainly controlled by elliptical tidal current flows on shallow shelves. This model is typical of some isolated continental shelf islands. The model is forced by a semi-diurnal barotropic inertia gravity wave imposed on the four open boundaries of a rectangular domain and its propagation results in an elliptical tidal flow within the domain in which the circular island lies. The influence of the surrounding island bathymetry and of the ellipse shape has been studied both in two and three dimensions. In the island vicinity, the residual circulation patterns over a tidal period show alongshore flow divergence along the major axis and convergence along the minor axis. A thin tidal ellipse (i.e. with a large ratio between major and minor axes) leads to strong eddy activity periods in the lee of the island during the flood and ebb phases, with eddy dissipation phases in between. By contrast, an almost round ellipse (axis ratio nearly 1) leads to vorticity filaments which continuously progress around the island without eddy shedding. The presence of a topographic slope in the vicinity of the island strengthens the eddy activity. This study suggests that the tidal current rotation favors the development of the eddy rotating in the same direction and weakens the development of the second eddy. In three dimensions with a surrounding bathymetry, an intense upwelling occurs in a large area in the lee of the island and the vertical velocities are stronger with thinner ellipses. With a flat bottom the vertical motions are almost fully generated by convergence and divergence of the secondary flow. With a varying bottom topography, the vertical motions come from a combination of this mechanism with convergence and divergence of the depth averaged flow.     

Physical mechanisms of submesoscale eddies generation: evidences from laboratory modeling and satellite data in the Black Sea

Ocean Dynamics - The observed evidence of the implementation of three different mechanisms of the submesoscale eddies generation in the Black Sea previously studied by the field research and...     

Baroclinic tidal flows and inundation processes in Cook Inlet, Alaska: numerical modeling and satellite observations

A wetting and drying (WAD) algorithm is implemented in a baroclinic three-dimensional ocean circulation model of Cook Inlet, Alaska, where large tidal ranges (≈10 m) regularly expose extensive mudflats. The model includes tides and wind- and buoyancy-induced flows. In the upper Inlet, the model successfully simulates large amplification of tides and propagation of fast (3 ∼ 4 m s⁻¹) tidal bores over shallow mudflats. The simulated return flows during ebb expose large areas (∼100 km²) of the mudflats. Medium-resolution (250- and 500-m) images obtained from the moderate resolution imaging spectroradiometer (MODIS) instruments aboard the Terra and Aqua satellites were used to verify the model results by identifying the location, extent, and temporal changes of the exposed mudflat regions. The results demonstrate the value of operational, medium-resolution remote sensing data in evaluating the WAD model. Sensitivity tests show that WAD produces approximately 20% larger tidal amplitude and 10% slower phase than the corresponding experiment without WAD. In the deep channel of the central Inlet, the confluence of saline water of the lower Inlet with brackish water from rivers and melting ice from land around the upper Inlet produces a salinity front. At the simulated front, strong vertical circulation cells and surface convergence and currents develop, especially during the flood. The characteristics resemble those of “rip tides” often observed in this region.     

Hydrodynamic modelling of mesoscale eddies in the Black Sea

A three dimensional structure of mesoscale circulation in the Black Sea is simulated using the Proudman Oceanographic Laboratory Coastal Ocean Modelling System. A number of sensitivity tests reveal the response of the model to changes in the horizontal resolution, time steps, and diffusion coefficients. Three numerical grids are examined with x-fine (3.2 km), fine (6.7 km) and coarse (25 km) resolution. It is found that the coarse grid significantly overestimates the energy of the currents and is not adequate even for the study of basin-scale circulation. The x-fine grid, on the other hand, does not give significant advantages compared to the fine grid, and the latter is used for the bulk of simulations. The most adequate parameters are chosen from the sensitivity study and used to model both the basin-scale circulation and day-to-day variability of mesoscale currents for the months of May and June of 2000. The model is forced with actual wind data every 6 h and monthly climatic data for evaporation, precipitation, heat fluxes and river run-off. The results of the fine grid model are compared favourably against the satellite imagery. The model adequately reproduces the general circulation and many mesoscale features including cyclonic and anticyclonic eddies, jets and filaments in different parts of the Black Sea. The model gives a realistic geographical distribution and parameters of mesoscale currents, such as size, shape and evolution of the eddies.     

Remote sensing of coral reefs and their physical environment

There has been a vast improvement in access to remotely sensed data in just a few recent years. This revolution of information is the result of heavy investment in new technology by governments and industry, rapid developments in computing power and storage, and easy dissemination of data over the internet. Today, remotely sensed data are available to virtually anyone with a desktop computer. Here, we review the status of one of the most popular areas of marine remote sensing research: coral reefs. Previous reviews have focused on the ability of remote sensing to map the structure and habitat composition of coral reefs, but have neglected to consider the physical environment in which reefs occur. We provide a holistic review of what can, might, and cannot be mapped using remote sensing at this time. We cover aspects of reef structure and health but also discuss the diversity of physical environmental data such as temperature, winds, solar radiation and water quality. There have been numerous recent advances in the remote sensing of reefs and we hope that this paper enhances awareness of the diverse data sources available, and helps practitioners identify realistic objectives for remote sensing in coral reef areas.     

A demographic approach to monitoring the health of coral reefs

Inshore coral reefs adjacent to the wet tropics in North Queensland, Australia, are regularly exposed to flood plumes from coastal river systems. Changes in the nature of these plumes have been linked to the declining health of coral reefs in the region. The effect of flood plumes on the health of inshore corals was investigated by quantifying aspects of the demography of populations of corymbose and digitate Acropora at three groups of Island reefs along a gradient of exposure and decreasing water quality (High Island >Frankland's >Fitzroy). The size-structures of colonies, the rates of sexual recruitment, and the growth and survival of juveniles, all varied among the Island reefs. Juvenile and adult sized colonies were far more abundant at the Fitzroy Island reefs, than at the High or Frankland Island reefs that were more exposed to flood plumes. Additionally, there were up to eight times as many sexual recruits at the Fitzroy Island reefs, compared with the High Island reefs. However, the rates of growth and survival of the juvenile sized corals at the Fitzroy Island reefs were lower than at the more exposed reefs. The comparatively low abundance of adult corals at the exposed reefs is most likely due to their histories of disturbance from crown-of-thorns and coral bleaching, but the lack of subsequent recovery due to their low levels of larval recruitment. If a stock-recruitment relationship is typical for these groups of reefs, then the low rates of recruitment may be linked to the low density of adult colonies. Alternately, direct or indirect effects of chronic exposure to poor water quality may have resulted in less suitable substrata for larval settlement. We discuss these results and provide examples of how information about population structure and dynamics can be used in simple matrix models to quantify the current and future health of populations of corals under various scenarios.     

Sensitivity of tidal sand wavelength to environmental parameters: A combined data analysis and modelling approach

An integrated field data-modelling approach is employed to investigate relationships between the wavelength of tidal sand waves and four environmental parameters: tidal current amplitude, water depth, tidal ellipticity and median grain size. From echo sounder data at 23 locations on the Dutch continental shelf, the average wavelengths of observed sand waves are determined and compared with the wavelengths obtained with a process-based model. The latter describes the initial formation of these bedforms due to feedbacks between the tidal current and the erodible bed and uses environmental parameters for the 23 locations as input. Good agreement between observed and modelled wavelengths is found if the bottom stress experienced by tidal currents is adequately quantified. Model results show that the wavelength of sand waves increases with increasing water depth, tidal ellipticity and grain size (coarse sand), whilst it decreases with increasing tidal current amplitude and grain size (fine sand). Due to the limited number of stations and the fact that all four parameters change from location to location, the modelled relationships are only partly supported by the field observations.     

On the response of Black Sea level to external forcing: altimeter data and numerical modelling

In this work, we address the Black Sea setup of Nucleus for European Modelling of the Ocean (NEMO), and in particular some model enhancements associated with the most important characteristic of ocean dynamics in this semi-enclosed basin, that is the sea-level variability and its relationship with water cycles and wind. Forcing data are presented in detail and compared with previously used coarser-resolution data. One emphasis in this paper is on the statistical analyses of forcing data and outputs from simulations with a focus on the sea level and its change. Numerical simulations are carried out as free run, and alternatively, altimeter data assimilation based on displacement of water properties in the pycnocline is used. Comparisons between the two runs identify the robustness of circulation driven by water balance and winter intensification. Problems in the model to replicate the redistribution of water properties between the two sub-basins in free-run mode are also discussed, which are observed during years with extreme climatic conditions.     

Mercury levels in coral reefs along the Caribbean coast of Central America

Sediment and coral skeleton samples from 23 coral reefs along the Caribbean coast of Costa Rica and Panama (1497 km) were evaluated for total mercury (Hg). High levels of pollution were found in the entire region with averages of 18.9 and 71.3 ppb in coral skeletons and sediments respectively. Significantly higher contamination was found in Panamanian corals (21.4 ppb) while compared to Costa Rican reef sediments (85.9 ppb). Hg from several processes and non-point sources (e.g., erosion, runoff, flooding, mining, overuse of agrochemicals, industrial waste, ports, and refineries) may have affected the entire region. The widespread observed distribution suggests that Hg is being carried along long distances within the region due to its high concentrations found in “pristine” reefs. Forest burning and colonial mining residues may be considered as possible contamination factors.     

Factors influencing the calculation of periodic secondary circulation in a tidal river: numerical modelling of the lower Sacramento River,USA

Secondary circulation is the component of three‐dimensional (3D) flow in river channels perpendicular to the primary flow direction. Secondary circulation calculated from acoustic Doppler current profiler (ADCP) transects is sensitive to the calculation method and is affected by the transect angle relative to the mean flow direction and variations in the flow direction along a transect. To quantify bounds on transect alignment relative to river flow for field data collection and examine tidal time‐scale variability in secondary circulation, the 3D hydrodynamic model UnTRIM was applied to simulate the hydrodynamics in the lower reach of the Sacramento River (CA, USA). Secondary circulation was calculated using the Rozovskii and the zero net discharge methods on repeated transects extracted from the model results in regions of both relatively uniform and complex flows. When the depth‐averaged flow direction along a transect varied by more than about 5 °, occurring when the transect was as little as 10 to 20 ° out of normal to the mean flow direction, the Rozovskii method produced more realistic secondary circulation than the zero net discharge method. Analysis indicated that ADCP transects should be within 20 ° of perpendicular to the mean flow direction when calculating secondary circulation. Secondary circulation strength around two tidally influenced bends generally increased with increasing flow and broke down near slack water. However, the strength of the secondary circulation was not only a function of the flow magnitude, but also depended on the direction of the water flow and the transect location relative to the river curvature, which varied with the tidal flow direction. Copyright © 2015 John Wiley & Sons, Ltd.     

Effects of terrestrial runoff on the ecology of corals and coral reefs: review and synthesis

This paper reviews and evaluates the current state of knowledge on the direct effects of terrestrial runoff on (1) the growth and survival of hard coral colonies, (2) coral reproduction and recruitment, and (3) organisms that interact with coral populations (coralline algae, bioeroders, macroalgae and heterotrophic filter feeders as space competitors, pathogens, and coral predators). The responses of each of these groups are evaluated separately against the four main water quality parameters: (1) increased dissolved inorganic nutrients, (2) enrichment with particulate organic matter, (3) light reduction from turbidity and (4) increased sedimentation. This separation facilitates disentangling and understanding the mechanisms leading to changes in the field, where many contaminants and many responses co-occur. The review also summarises geographic and biological factors that determine local and regional levels of resistance and resilience to degradation. It provides a conceptual aid to assess the kind of change(s) likely to occur in response to changing coastal water quality.     

ENCORE: the effect of nutrient enrichment on coral reefs. Synthesis of results and conclusions

Coral reef degradation resulting from nutrient enrichment of coastal waters is of increasing global concern. Although effects of nutrients on coral reef organisms have been demonstrated in the laboratory, there is little direct evidence of nutrient effects on coral reef biota in situ. The ENCORE experiment investigated responses of coral reef organisms and processes to controlled additions of dissolved inorganic nitrogen (N) and/or phosphorus (P) on an offshore reef (One Tree Island) at the southern end of the Great Barrier Reef, Australia. A multi-disciplinary team assessed a variety of factors focusing on nutrient dynamics and biotic responses. A controlled and replicated experiment was conducted over two years using twelve small patch reefs ponded at low tide by a coral rim. Treatments included three control reefs (no nutrient addition) and three + N reefs (NH4Cl added), three + P reefs (KH2PO4 added), and three + N + P reefs. Nutrients were added as pulses at each low tide (ca twice per day) by remotely operated units. There were two phases of nutrient additions. During the initial, low-loading phase of the experiment nutrient pulses (mean dose = 11.5 microM NH4+; 2.3 microM PO4(-3)) rapidly declined, reaching near-background levels (mean = 0.9 microM NH4+; 0.5 microM PO4(-3)) within 2-3 h. A variety of biotic processes, assessed over a year during this initial nutrient loading phase, were not significantly affected, with the exception of coral reproduction, which was affected in all nutrient treatments. In Acropora longicyathus and A. aspera, fewer successfully developed embryos were formed, and in A. longicyathus fertilization rates and lipid levels decreased. In the second, high-loading, phase of ENCORE an increased nutrient dosage (mean dose = 36.2 microM NH4+; 5.1 microM PO4(-3)) declining to means of 11.3 microM NH4+ and 2.4 microM PO4(-3) at the end of low tide) was used for a further year, and a variety of significant biotic responses occurred. Encrusting algae incorporated virtually none of the added nutrients. Organisms containing endosymbiotic zooxanthellae (corals and giant clams) assimilated dissolved nutrients rapidly and were responsive to added nutrients. Coral mortality, not detected during the initial low-loading phase, became evident with increased nutrient dosage, particularly in Pocillopora damicornis. Nitrogen additions stunted coral growth, and phosphorus additions had a variable effect. Coral calcification rate and linear extension increased in the presence of added phosphorus but skeletal density was reduced, making corals more susceptible to breakage. Settlement of all coral larvae was reduced in nitrogen treatments, yet settlement of larvae from brooded species was enhanced in phosphorus treatments. Recruitment of stomatopods, benthic crustaceans living in coral rubble, was reduced in nitrogen and nitrogen plus phosphorus treatments. Grazing rates and reproductive effort of various fish species were not affected by the nutrient treatments. Microbial nitrogen transformations in sediments were responsive to nutrient loading with nitrogen fixation significantly increased in phosphorus treatments and denitrification increased in all treatments to which nitrogen had been added. Rates of bioerosion and grazing showed no significant effects of added nutrients. ENCORE has shown that reef organisms and processes investigated in situ were impacted by elevated nutrients. Impacts were dependent on dose level, whether nitrogen and/or phosphorus were elevated and were often species-specific. The impacts were generally sub-lethal and subtle and the treated reefs at the end of the experiment were visually similar to control reefs. Rapid nutrient uptake indicates that nutrient concentrations alone are not adequate to assess nutrient condition of reefs. Sensitive and quantifiable biological indicators need to be developed for coral reef ecosystems. The potential bioindicators identified in ENCORE should be tested in future research on coral reef/nutrient interactions. Synergistic and cumulative effects of elevated nutrients and other environmental parameters, comparative studies of intact vs. disturbed reefs, offshore vs. inshore reefs, or the ability of a nutrient-stressed reef to respond to natural disturbances require elucidation. An expanded understanding of coral reef responses to anthropogenic impacts is necessary, particularly regarding the subtle, sub-lethal effects detected in the ENCORE studies.     

基于CHAMP卫星与三维Taylor多项式模型的区域地磁建模研究

利用CHAMP卫星矢量和标量地磁测量数据,通过三维Taylor多项式模型建立了2010.0年中国及邻近地区在300 km高度附近的X、Y、Z和F分量的三维磁场模型.为了比较验证所建模型,分析了其与Taylor多项式模型(二维模型)不同截断阶数所对应的均方偏差(RMSE)、残差及分布等.结果表明,三维模型每一阶的RMSE和残差绝对值的平均值均要比二维模型的小约45%.由于采用了系数完全展开的建模方式,三维模型的系数数量约为二维模型的2倍,三维模型较低的截断阶数可以反映更多的地磁信息.本研究中的5阶三维Taylor模型基本可达到8阶Taylor模型的精度.两种模型绘制的地磁场及残差分布有较好的一致性.     

Nocturnal temperature changes over tropics during CAWSES-III campaign: Comparison with numerical models and satellite data

In the frame of the third CAWSES tidal campaign in June–August 2007, lidar and satellite data were collected and compared with numerical models. Continuous nocturnal middle atmospheric temperature measurements performed with a Rayleigh lidar located at La Reunion Island (20.8°S–55.5°E) were obtained for three subsequent nights. The results clearly show the presence of tidal components with a downward phase propagation. Comparisons with SABER satellite data show good agreement on tidal amplitude; however, some differences on the structures are reported probably due to the zonal nature of the retrieval provided by the SABER data. The observed tidal components are compared with two different numerical models such as the 2D global scale wave model and the 3D-GCM LMDz-REPROBUS. Both models reveal good agreement with temperature lidar patterns, while simulated tidal amplitudes are smaller by a factor of around 2–2.5 K.     

Potentialities,uncertainties and complexities in the response of coral reefs to future sea-level rise

Coral islands formed of largely unconsolidated sands only a few metres above sea level are thought to be particularly vulnerable to sea-level rise consequent upon global warming. However, scenarios which predict catastrophic flooding and loss of island area need reassessment, particularly in the light of the continued downwards revision of projected rates of future sea-level rise. Revised questions concern the interactions between reef growth and sea-level change, biophysical constraints on coral growth, and the importance to reef systems of potential changes in the magnitude, frequency and location of tropical cyclones and hurricanes. It is clear that most reefs have the growth potential to meet even the highest of future sea-level rise scenarios, but too little is known about physiological and physical constraints to reef growth to adequately evaluate the importance of these two factors in constraining this potential at the present time. Future sea-level rise in the tropical oceans, and coral reef responses, will take place against a backdrop of inter-regional differences in Holocene sea levels, resulting from the varying interaction of eustatic and hydro-isostatic processes. These differences have generated varying constraints on the development of modern reefs and varying inherited topographies upon which future sea-level changes will be superimposed. These controls are particularly important in assessing differences in vulnerability to future sea-level rise for reef islands in the Pacific Ocean and the Caribbean Sea.     

A numerical study of the circulation and monthly-to-seasonal variability in the Caribbean Sea: the role of Caribbean eddies

This study examines the circulation and associated monthly-to-seasonal variability in the Caribbean Sea using a regional ocean circulation model. The model domain covers the region between 99.0 and 54.0°W and between 8.0 and 30.3°N, with a horizontal resolution of 1/6°. The ocean circulation model is driven by 6-hourly atmospheric reanalysis data from the National Center for Environmental Prediction and boundary forcing extracted from 5-day global ocean reanalysis data produced by Smith et al. (Mercator Newsletter 36:39–49, 2010), and integrated for 7 years. A comparison of model results with observations demonstrates that the regional ocean circulation model has skill in simulating circulation and associated variability in the study region. Analysis of the model results, as well as a companion model run that uses steady annual mean forcing, illustrates the role of Caribbean eddies for driving monthly-to-seasonal circulation variability in the model. It is found that vertically integrated transport between Nicaragua and Jamaica is influenced by the interaction between the density perturbations associated with Caribbean eddies and the Nicaraguan Ridge. The impact of Caribbean eddies squeezing through the Yucatan Channel is also discussed.     

Analysis of multiple enteric viral targets as sewage markers in coral reefs

Water and coral mucus samples were collected from throughout the Florida Keys National Marine Sanctuary and the Dry Tortugas for three years and were analyzed for human enteric viruses (enteroviruses, noroviruses, hepatitis A virus and adenoviruses) as conservative markers of human sewage using molecular methods. Of the 100 coral and water samples collected, 40 contained genetic material from one or more human enteric viruses. DNA-based adenoviruses were detected widely, in 37.8% of samples and at 91% of stations, including ‘pristine’ reefs in the Dry Tortugas; however, the detection rate was 12% for the RNA-based enteroviruses and noroviruses (hepatitis A virus was never detected). The disparity between the prevalence of RNA- and DNA-based viruses suggests the need for additional work to determine the utility of adenovirus as marker of human sewage.     

Benchmark on the numerical simulations of the hydrodynamic and morphodynamic evolution of tidal channels and tidal inlets

A correct understanding of the hydrodynamics and morphodynamics of tidal basins is of fundamental importance for the fate of the Venice Lagoon, Italy. If on one hand, the development of sophisticated numerical models is called for in order to reproduce the complexity of the mechanisms governing the morphodynamic evolution of many natural environments, including lagoons, on the other hand, a clear knowledge of the reliability and limits of the results provided by these models is crucial in order to establish the condition under which they can be safely applied. To this aim, researchers involved in numerical modeling in the framework of the recent Corila research programmes, agreed to perform an accurate comparison of results provided by three different numerical models, applying them to the test case offered by the experimental investigations performed under controlled conditions by Tambroni et al. (2005a). Here, we consider the following numerical models: (i) a 2D finite element hydrodynamic model coupled with a 2D finite volume morphodynamic model (5 and 3); (ii) a 2D finite element morphodynamic model (Ferrarin et al., 2008); (iii) a 2D depth-averaged model for the inlet region, coupled with a 1D model for the channel (Tambroni et al., 2005b). A first set of simulations concerns the fixed bed case and shows that all the models provide similar results: in particular, they are able to predict the observed free surface oscillations satisfactorily, while comparison with the measured velocity field is less satisfactory. Moreover, as far as the flow field at the inlet is concerned, the models describe accurately the potential flow into the channel during the flood phase, while they are not able to adequately reproduce the occurrence of the fine structure of the shear layers shed by the inlet edges during the ebb phase. This limit is related to the shallow water character of the models. As for the morphodynamics, the long term equilibrium configurations of the bottom of the channel and of the near inlet region show qualitative agreement with the experimental observations, although in this case the differences between the results provided by the distinct numerical approaches are more marked.