Late Holocene δC and pollen records of paleosalinity from tidal marshes in the San Francisco Bay estuary, California

Records of stable carbon isotopes (δ¹³C) are presented from cores collected from four San Francisco Bay marshes and used as a proxy for changes in estuary salinity. The δ¹³C value of organic marsh sediments are a reflection of the relative proportion of C₃ vs. C₄ plants occupying the surface, and can thus be used as a proxy for vegetation change on the marsh surface. The four marshes included in this study are located along a natural salinity gradient that exists in the San Francisco Bay, and records of vegetation change at all four sites can be used to infer changes in overall estuary paleosalinity. The δ¹³C values complement pollen data from the same marsh sites producing a paleoclimate record for the late Holocene period in the San Francisco Bay estuary. The data indicate that there have been periods of higher-than-average salinity in the Bay estuary (reduced fresh water inflow), including 1600-1300 cal yr B.P., 1000-800 cal yr B.P., 300-200 cal yr B.P., and ca. A.D. 1950 to the present. Periods of lower-than-average salinity (increased fresh water inflow) occurred before 2000 cal yr B.P., from 1300 to 1200 cal yr B.P. and ca. 150 cal yr B.P. to A.D. 1950. A comparison of the timing of these events with records from the California coast, watershed, and beyond the larger drainage of the Bay reveals that the paleosalinity variations reflected regional precipitation.     

Dissolved sulfides in the oxic water column of San Francisco Bay,California

Trace contaminants enter major estuaries such as San Francisco Bay from a variety of point and nonpoint sources and may then be repartitioned between solid and aqueous phases or altered in chemical speciation. Chemical speciation affects the bioavailability of metals as well as organic ligands to planktonic and benthic organisms, and the partitioning of these solutes between phases. Our previous, work in south San Francisco Bay indicated that sulfide complexation with metals may be of particular importance because of the thermodynamic stability of these complexes. Although the water column of the bay is consistently well-oxygenated and typically unstratified with respect to dissolved oxygen, the kinetics of sulfide oxidation could exert at least transient controls on metal speciation. Our initial data on dissolved sulfides in the main channel of both the northern and southern components of the bay consistently indicate submicromolar concenrations (from <1 nM to 162 nM), as one would expect in an oxidizing environment. However, chemical speciation calculations over the range of observed sulfide concentrations indicate that these trace concentrations in the bay water column can markedly affect chemical speciation of ecologically significant trace metals such as cadmium, copper, and zinc.     

Lateral migration and bank erosion in a saltmarsh tidal channel in San Francisco Bay, California

Saltmarsh tidal channels have often been recognized as being stable landscape features, despite highly sinous planforms, severely undercut banks, and high rates of bank erosion. In an effort to solve this paradox, a saltmarsh tidal channel in the San Francisco Bay was monitored from March 1995 to March 1996. The short-term rate of bank erosion was measured using erosion pins and found to be 57 ± 10 mm yr^?1 on the outside banks of meander bends. In addition, a long-term maximum lateral migration rate of 23 ± 23 mm yr^?1 was estimated from aerial photos, producing a dimensionless channel migration rate (defined as the rate of migration divided by channel with), of 0.5% yr^?1. The difference in the rates of lateral migration and bank erosion is attributed to the persistence of failed bank material (slump blocks) in the channel. The slump blocks induce sedimentation, protect the banks, and prevent further bank erosion. A published stability analysis method for undercut banks is applied to determine a maximum overhanging width. Using the measured compressive and tensile strengths of rooted bank material, 16.55 ± 1.16 kPa and 2.93 ± 0.71 kPa, respectively, the maximum width of an undercut bank is calculated to be 0.69 m. The average width of slump blocks measured in the field is 0.67 ± 0.25 m. A simple numerical model predicting the rate of lateral migration is derived using the results from the stability analysis and data from sedimentation and erosion pins inserted throughout the channel. This model accurately predicts a rate of 23 ± 3 mm yr^?1.     

Spatial and seasonal patterns in sediment nitrogen remineralization and ammonium concentrations in San Francisco Bay,California

Nitrogen remineralization and extractable ammonium concentrations were measured in sediments from several locations in North and South San Francisco bays. In South Bay, remineralization rates decreased with depth in sediment and were highest in the spring following the seasonal phytoplankton bloom. At the channel stations, peak remineralization lagged peak water-column phytoplankton biomass (as measured by chlorophylla) by a month. Remineralization rates were generally higher in South Bay than North Bay. The lower remineralization rates in North Bay may be a result of anomalously low phytoplankton production and thus reduced deposition to the sediments, as well as low reiverine organic inputs to the upper estuary in recent years. Remineralization rates were positively correlated to carbon and nitrogen content of the sediments. In general, ammonium profiles in South Bay sediments showed no increase in deeper (4–8 cm) sediments. In North Bay, ammonium concentrations were greatest at stations with highest remineralization rates, and, in contrast to South Bay, extractable ammonium increased in deeper sediment. Differences in ammonium pools between North Bay and South Bay may be a result of increased irrigation by deep-dwelling macrofauna, which are more abundant in South Bay.     

Silver in San Francisco Bay estuarine waters

Spatial gradients of silver concentrations in the surface waters of San Francisco Bay reveal substantial anthropogenic perturbations of the biogeochemical cycle of the element throughout the estuarine system. The most pronounced perturbations are in the south bay, where dissolved (<0.45 μm) silver concentrations are as high as 250 pM. This is more than one order-of-magnitude above baseline concentrations in the northern reach of the estuary (6 pM) and approximately two orders-of-magnitude above natural concentrations in adjacent coastal waters (3 pM). The excess silver is primarily attributed to wastewater discharges of industrial silver to the estuary on the order of 20 kg d^?1. The contamination is most evident in the south bay, where wastewater discharges of silver are on the order of 10 kg d^?1 and natural freshwater discharges are relatively insignificant. The limited amount of freshwater flushing in the south bay was exacerbated by persistent drought conditions during the study period. This extended the hydraulic residence time in the south bay (≥160 d), and revealed the apparent seasonal benthic fluxes of silver from anthropogenically contaminated sediments. These were conservatively estimated to average ≈16 nmol m^?2 d^?1 in the south bay, which is sufficient to replace all of the dissolved silver in the south bay within 22 d. Benthic fluxes of silver throughout the estuary were estimated to average ≈11 nmol m^?2 d^?1, with an annual input of approximately 540 kg yr^?1 of silver to the system. This dwarfs the annual fluvial input of silver during the study period (12 kg yr^?1) and is equivalent to approximately 10% of the annual anthropogenic input of silver to the estuary (3,700–7,200 kg yr^?1). It is further speculated that benthic fluxes of silver may be greater than or equal to waste water fluxes of silver during periods of intense diagenic remobilization. However, all inputs of dissolved silver to the estuary are efficiently sorbed by suspended particulates, as evidenced by the relatively constant conditional distribution coefficient for silver throughout the estuary (K_d≈10⁵).     

Selenium Behavior in San Francisco Bay Sediments

Sediment and porewater samples (1997–1999) were collected in the Northern Reach of the San Francisco Bay and Sacramento–San Joaquin Delta for determinations of sedimentary selenium and its chemical speciation. Total sedimentary selenium increased with depth, with approximately 50% of the sedimentary selenium as elemental selenium and 35% as organic selenide. Porewater total dissolved selenium increased with depth in the estuary and Delta, and fluxes out of the sediments were calculated at 0.01 and 0.06 nmol cm⁻² year⁻¹ for the estuary and Delta, respectively. Present-day sediment–water exchange of dissolved selenium and internal transformations cannot explain the observed increase in total sedimentary selenium with depth. However, mass balance calculations demonstrate that the increase in total selenium with depth may be linked to higher dissolved selenium concentrations in the water column in the 1980s, suggesting that the sediments could be used as historical recorders of selenium in the estuary.     

Distributions of pesticides and organic contaminants between water and suspended sediment,San Francisco Bay,California

Suspended-sediment and water samples were collected from San Francisco Bay in 1991 during low river discharge and after spring rains. All samples were analyzed for organophosphate, carbamate, and organochlorine pesticides; petroleum hydrocarbons; biomarkers; and polynuclear aromatic hydrocarbons. The objectives were to determine the concentrations of these contaminants in water and suspended sediment during two different hydrologic conditions and to determine partition coefficients of the contaminants between water and sediment. Concentrations of hydrophobic contaminants, such as polynuclear aromatic hydrocarbons, varied with location of sample collection, riverine discharge, and tidal cycle. Concentrations of hydrophobic contaminants in suspended sediments were highest during low river discharge but became diluted as agricultural soils entered the bay after spring rains. Polynuclear aromatic hydrocarbons defined as dissolved in the water column were not detected. The concentrations sorbed on suspended sediments were variable and were dependent on sediment transport patterns in the bay. In contrast, the relatively hydrophilic organophosphate pesticides, such as chlorpyrifos and diazinon, has a more uniform concentration in suspended sediment. These pesticides were detected only after spring rains. Most of the measured diazinon, at least 98% for all samples, was in the dissolved phase. Measured partition coefficients for diazinon generally were uniform, which suggests that suspended-sediment concentrations were close to equilibrium with dissolved concentrations. The concentration of diazinon sorbed to suspended sediments, at any given sampling site, was driven primarily by the more abundant solution concentration. The concentrations of diazinon sorbed to suspended sediments, therefore, were independent of the patterns of sediment movement.     

Impact of high herbivore densities on introduced smooth cordgrass,Spartina alterniflora,invading San Francisco Bay,California

Spartina alterniflora, smooth cordgrass, invading San Francisco Bay, California (USA), is attacked by high densities of a plant hopper, Prokelisia marginata, and a mirid bug, Trigonotylus uhleri. Both herbivores are sap-feeders. We investigated the impact of these herbivores on S. alterniflora's growth rate, vegetative spread, and seed production by manipulating herbivore densities in the field and in a greenhouse. Herbivore densities in the field peaked in early fall, with P. marginata averaging more than 300 individuals per mature culm of S. alterniflora (about 100,000 per m²) and T. uhleri densities exceeding 10 per culm (about 3,000 per m²). Field reductions of herbivore densities by approximately 70% with insecticidal soap did not result in greater vegetative growth rates or lateral spread of plants; plants grew vigorously with the highest densities of insects. In the greenhouse study, conducted with seedlings, herbivory significantly reduced plant mass and tiller number in some but not all replicate herbivory treatments. In both field and greenhouse, there were significant differences between some clones' growth rates independent of herbivory. Inflorescence production in the field was not affected by reduced-herbivory treatments. Seed set was low under conditions of both natural and reduced herbivory, averaging 0.4%. Despite densities of P. marginata and T. uhleri that are much higher than typically observed in areas where S. alterniflora is native, herbivory by these particular insects appears to have little impact and in unlikely to limit S. alterniflora’s spread through San Francisco Bay. *** DIRECT SUPPORT *** A01BY070 00009     

Phytoplankton blooms and nitrogen productivity in San Francisco Bay

San Francisco Bay has been considered an HNLC or HNLG (high nutrient low chlorophyll or low growth) region with nonlimiting concentrations of inorganic nutrients yet low standing stocks of phytoplankton. Most of the studies leading to this conclusion come from the South Bay and little is known about nutrient processes and phytoplankton productivity in the northern and central parts of the estuary. Data collected over 3 yr (1999–2003) in Suisun, San Pablo, and Central Bays describe the availability of dissolved inorganic nitrogen (DIN), silicate, and phosphate and the seasonal variability in phytoplankton abundance. Rate measurements of fractionated nitrogen productivity provide the relative contributions of different forms of DIN (ammonium and nitrate) and different sized phytoplankton to the development of seasonal phytoplankton blooms. Regional differences in bloom dynamics are observed with Suisun Bay, the least saline, highest nutrient, most turbid region having less phytoplankton biomass and productivity than San Pablo and Central Bays, except in the abnormally wet spring of 2000. Spring blooms in San Francisco Bay are driven primarily by high rates of nitrate uptake by larger phytoplankton cells following a period of increased ammonium uptake that depletes the ambient ammonium. The smaller occasional fall blooms are apparently flueled mostly by ammonium uptake by small sized phytoplankton. The data suggest that the HNLC condition in the northern and central parts of San Francisco Bay is due primarily to light availability modulated by the interaction between ammonium and nitrate, and the relative amounts of the two forms of the DIN pool available to the phytoplankton.     

Stratigraphy of late Quaternary estuarine deposits and amino acid stereochemistry of oyster shells beneath San Francisco Bay,California

The sequence of Quaternary deposits beneath the floor of San Francisco Bay includes four to seven noncontemporaneous estuarine units intercalated with alluvium and dune sand. Units L (0–10,000 B.P.), M (>40,000 B.P., probably ca. 80,000–140,000 B.P.), and N (older than unit M) are distinctly superposed. The dominant molluscan fossil in each of these three units is Ostrea lurida Carpenter, the native oyster along much of the pacific Coast of North America. Despite a lamellar structure that suggests vulnerability to contamination, O. lurida shells generally yield amino acid enantiomeric ratios that are analytically reproducible and stratigraphically consistent. The kinetics of racemization in O. lurida conceivably resembles that of Protothaca and Saxidomus, other bivalves whose kinetics of racemization are relatively well understood. Assuming such a resemblance, enantiomeric ratios in O. lurida imply that (1) unit M is the same approximate age as estuarine terrace deposits bordering San Pablo Bay and Carquinez Strait, providing that the terrace deposits have been at diagenetic temperatures 1°-2°C warmer than unit M; and (2) the age of unit N is about four times greater than that of unit M, providing that both units have been at the same approximate diagenetic temperature.     

Microbial processes in the San Francisco Bay estuarine turbidity maximum

We examined microbial processes and the distribution of particulate materials in the estuarine turbidity maximum (ETM, salinity 2–10 PSS) of northern San Francisco Bay on three cruises during the late spring of 1994 (low flow: April 19, April 28, May 17) and two cruises during the early summer of 1995 (high flow; June 13, July 18). Under low flow conditions, chlorophyll concentrations decreased by a factor of 2–4, bacterial abundance decreased by 20%, and L-leucine incorporation rate decreased by a factor of about 2 over a salinity range of 0–2 PSS, then remained relatively constant at higher salinities. Over this same salinity range under high flow conditions, chlorophyll concentration was c. twofold lower, bacterial abundance was c. threefold higher, and L-leucine incorporation rate was in the same range as during low flow. Under high flow conditions, chlorophyll concentration increased by 20%., bacterial abundance decreased by a factor of 2, and L-leucine incorporation rate decreased by half (June 13) or remained unchanged (July 19) with increasing salinity. Under low flow conditions the concentration of suspended particulate material (SPM), particulate organic carbon (POC), and particulate organic nitrogen (PON) increased 3–10 fold with salinity, to a maximum at intermediate salinities (c. 6 PSS). As a result, the contribution of phytoplankton to POC decreased from a maximum of 32% in fresh water to c. 6% in the ETM. The contribution of bacterial biomass similarly decreased from 5% in fresh water to 0.8% in the ETM. The C:N ratio of particulate material increased from <10 in fresh water to >12 in the ETM. High variability in abundance estimates confounded analysis of patterns in bacterial biomass partitioning between particle-associated and free-living fractions along the salinity gradient. However, the partitioning of L-leucine incorporation shifted dramatically from being predominantly by free-living cells in fresh water to being predominantly by particleassociated populations in the ETM. The metabolic fate of thymidine taken up differed, between particle-associated and free-living bacteria, suggesting some metabolic divergence of these assemblages.     

Late Holocene vegetation changes in Greenwater Valley,Mojave Desert,California

Small-scale late Holocene vegetation changes were determined from a series of 13 modern and fossil packrat middens collected from a site in the Greenwater Valley, northern Mojave Desert, California. Although the site is above the modern lower limit of Coleogyne ramosissima (black-brush), macrofossils of this shrub are only present in samples younger than 270 yr B.P. In order to measure changes more subtle than presence vs absence, macrofossil concentrations were quantified, and principal components and factor analyses were used to distinguish midden plant assemblages. Both the presence/absence data and the statistical analyses suggest a downward shift of 50 to 100 m for Coleogyne (blackbrush) communities between 1435 and 1795 A.D.     

Nutrient Fluxes from Sediments in the San Francisco Bay Delta

In September 2011 and March 2012, benthic nutrient fluxes were measured in the San Francisco Bay Delta, across a gradient from above the confluence of the Sacramento and San Joaquin Rivers to Suisun Bay. Dark and illuminated core incubation techniques were used to measure rates of denitrification, nutrient fluxes (phosphate, ammonium, nitrate), and oxygen fluxes. While benthic nutrient fluxes have been assessed at several sites in northern San Francisco Bay, such data across a Delta–Bay transect have not previously been determined. Average September rates of DIN (nitrate, nitrite, ammonium) flux were net positive across all sites, while March DIN flux indicated net uptake of DIN at some sites. Denitrification rates based on the N₂/Ar ratio approach were between 0.6 and 1.0 mmol m^?2 day^?1, similar to other mesotrophic estuarine sediments. Coupled nitrification–denitrification was the dominant denitrification pathway in September, with higher overlying water nitrate concentrations in March resulting in denitrification driven by nitrate flux into the sediments. Estimated benthic microalgal productivity was variable and surprisingly high in Delta sediments and may represent a major source of labile carbon to this ecosystem. Variable N/P stoichiometry was observed in these sediments, with deviations from Redfield driven by processes such as denitrification, variable light/dark uptake of nutrients by microalgae, and adsorption of soluble reactive phosphorus.     

Trace metals (Cd,Cu, Ni,and Zn) and nutrients in coastal waters adjacent to San Francisco Bay,California

Samples collected in December 1990 and July 1991 show that dissolved Cd, Cu, Ni, and Zn distributions in the Gulf of the Farallones are dominated by mixing of two end-members: (1) metal-enriched San Francisco Bay water and (2) offshore California Current water. The range of dissolved metal concentrations observed is 0.2–0.9 nmol kg^?1 for Cd, 1–20 nmol kg^?1 for Cu, 4–16 nmol kg^?1 for Ni, and 0.2–20 nmol kg^?1 for Zn. Effective concentrations in fresh water discharged into San Francisco Bay during 1990–1991 (estimated by extrapolation to zero salinity) are 740–860 μmol kg^?1 for silicate, 21–44 μmol kg^?1 for phosphate, 10–15 nmol kg^?1 for Cd, 210–450 nmol kg^?1 for Cu, 210–270 nmol kg^?1 for Ni, and 190–390 nmol kg^?1 for Zn. Comparison with effective trace metal and nutrient concentrations for freshwater discharge reported by Flegal et al. (1991) shows that input of these constituents to the northern reaches of San Francisco Bay accounts for only a fraction of the input to Gulf of the Farallones from the estuary system as a whole. The nutrient and trace metal composition of shelf water outside a 30-km radius from the mouth of the estuary closely resembles that of California Current water further offshore. In contrast to coastal waters elsewhere, there is little evidence of Cd, Cu, Ni, and Zn input by sediment diagenesis in continental shelf waters of California.     

Late Holocene paleoecology of the Southern Plains

Analyses of pollen and land snails from rocksheter sites in the Osage Hills of northeastern Oklahoma indicate that the period 2000-1000 yr B.P. was moister than today. During that time, colonies of the prairie vole Microtus ochrogaster were present in the Texas Panhandle. About 1000 yr B.P. the climate changed to dry conditions that have persisted to the present. Disjunct colonies of small mammals in Texas became extinct at the beginning of the dry episode, thereby establishing the composition of the modern fauna. The climatic model for the origin of the Panhandle Aspect (A.D. 1200–1500) is questioned on the grounds that the Southern Plains experienced a long period of dry climate commencing A.D. 950.     

Distribution of colloidal trace metals in the San Francisco Bay estuary

The size distribution of trace metals (Al, Ag, Cd, Cu, Fe, Mn, Ni, Sr, and Zn) was examined in surface waters of the San Francisco Bay estuary. Water samples were collected in January 1994 across the whole salinity gradient and fractionated into total dissolved (<0.2 μm colloidal (10 KDa–0.2 μm) and < 10 kDa molecular weight phases. In the low salinity region of the estuary, concentrations of colloidal A1, Ag, and Fe accounted for ≥84% of the total dissolved fraction, and colloidal Cu and Mn accounted for 16–20% of the total. At high salinities, while colloidal Fe was still relatively high (40% of the dissolved), very little colloidal Al, Mn, and Cu (<10%) and no colloidal Ag was detectable. Colloidal Zn accounted for <3% of the total dissolved along the estuary, and colloidal Ni was only detectable (<2%) at the river endmember. All of the total dissolved Cd and Sr throughout the estuary consisted of relatively low molecular weight (<10 kDa) species. The relative affinity of metals for humic substances and their reactivity with particle surfaces appear to determine the amounts of metal associated with colloids. The mixing behavior of metals along the estuary appears to be determined by the relative contribution of the colloidal phase to the total dissolved pool. Metals with a small or undetectable colloidal fraction showed a nonconservative excess (Cd, Cu, Ni, and Mn) or conservative mixing (Sr) in the total dissolved fraction, relative to ideal dilution of river water and seawater along the estuary.

The salt-induced coagulation of colloidal A1, Fe, and Cu is indicated by their highly nonconservative removal along the salinity gradient. However, colloidal metals with low affinity for humic substances (Mn and Zn) showed conservative mixing behavior, indicating that some riverine colloids are not effectively aggregated during their transport to the sea. While colloidal metal concentrations correlated with dissolved organic carbon, they also covaried with colloidal Al, suggesting that colloids are a mixture of organic and inorganic components. Furthermore, the similarity between the colloidal metal:A1 ratios with the crustal ratios indicated that colloids could be the product of weathering processes or particle resuspension. Distribution coefficients for colloidal particles (K_c) and for large, filter-retained particles (K_d) were of the same magnitude, suggesting similar binding strength for the two types of particles. Also, the dependence of the distribution coefficients on the amount of suspended particulate matter (the so-called particle concentration effect) was still evident for the colloids-corrected distribution coefficient (K_p+c) and for metals (e.g., Ni) without affinity for colloidal particles.     

Carbon Sequestration and Sediment Accretion in San Francisco Bay Tidal Wetlands

Tidal wetlands play an important role with respect to climate change because of both their sensitivity to sea-level rise and their ability to sequester carbon dioxide from the atmosphere. Policy-based interest in carbon sequestration has increased recently, and wetland restoration projects have potential for carbon credits through soil carbon sequestration. We measured sediment accretion, mineral and organic matter accumulation, and carbon sequestration rates using ¹³⁷Cs and ²¹⁰Pb downcore distributions at six natural tidal wetlands in the San Francisco Bay Estuary. The accretion rates were, in general, 0.2?C0.5?cm?year^?1, indicating that local wetlands are keeping pace with recent rates of sea-level rise. Mineral accumulation rates were higher in salt marshes and at low-marsh stations within individual sites. The average carbon sequestration rate based on ²¹⁰Pb dating was 79?g?C?m^?2?year^?1, with slightly higher rates based on ¹³⁷Cs dating. There was little difference in the sequestration rates among sites or across stations within sites, indicating that a single carbon sequestration rate could be used for crediting tidal wetland restoration projects within the Estuary.     

Modeling Fate, Transport, and Biological Uptake of Selenium in North San Francisco Bay

Selenium behavior in North San Francisco Bay, the largest estuary on the US Pacific coast, is simulated using a numerical model. This work builds upon a previously published application for simulating selenium in the bay and considers point and non-point sources, transport and mixing of selenium, transformations between different species of selenium, and biological uptake by phytoplankton, bivalves, and higher organisms. An evaluation of the calibrated model suggests that it is able to represent salinity, suspended material, and chlorophyll a under different flow conditions beyond the calibration period, through comparison against long-term data, and the distribution of different species of dissolved and particulate selenium. Model-calculated selenium concentrations in bivalves compared well to a long-term dataset, capturing the annual and seasonal variations over a 15-year period. In particular, the observed lower bivalve concentrations in the wet flow periods, corresponding to lower average particulate selenium concentrations in the bay, are well represented by the model, demonstrating the role of loading and hydrology in affecting clam concentrations. Simulated selenium concentrations in higher organisms including white sturgeon and greater scaup also compared well to the observed data in the bay. Finally, a simulation of changing riverine inflows into the bay that might occur as a consequence of proposed hydrologic modifications indicated significant increases in dissolved and particulate selenium concentrations in the bay. The modeling framework allows an examination of the relationship between selenium loads, variations in inflow, in-bay concentrations, and biota concentrations to support management for limiting wildlife impacts.     

Sources of nitrogen and phosphorus to Northern San Francisco Bay

We studied nutrient sources to the Sacramento River and Suisun Bay (northern San Francisco Bay) and the influence which these sources have on the distributions of dissolved inorganic nitrogen (DIN) and dissolved reactive phosphorus (DRP) in the river and bay. We found that agricultural return flow drains and a municipal wastewater treatment plant were the largest sources of nutrients to the river during low river flow. The Sutter and Colusa agricultural drains contributed about 70% of the transport of DIN and DRP by the river above Sacramento (about 20% of the total transport by the river) between August 8 and September 26, 1985. Further downstream, the Sacramento Regional Wastewater Treatment Plant discharged DIN and DRP at rates that were roughly 70% of total DIN and DRP transport by the river at that time. Concentrations at Rio Vista on the tidal river below the Sacramento plant and at the head of the estuary were related to the reciprocals of the river flows, indicating the importance of dilution of the Sacramento waste by river flows. During very dry years, elevated DIN and DRP concentrations were observed in Suisun Bay. We used a steady-state, one-dimensional, single-compartment box model of the bay, incorporating terms for advection, exchange, and waste input, to calculate a residual rate for all processes not included in the model. We found that the residual for DIN was related to concentrations of chlorophylla (Chla). The residual for DRP was also related to Chla at high concentrations of Chla, but showed significant losses of DRP at low Chla concentrations. These losses were typically equivalent to about 80% of the wastewater input rate.