Effects of elevated pCO2 on reproductive properties of the benthic copepod Tigriopus japonicus and gastropod Babylonia japonica

We investigated the effects of elevated pCO₂ in seawater both on the acute mortality and the reproductive properties of the benthic copepod Tigriopus japonicus and gastropod Babylonia japonica with the purpose of accumulating basic data for assessing potential environmental impacts of sub-sea geological storage of anthropogenic CO₂ in Japan. Acute tests showed that nauplii of T. japonicus have a high tolerance to elevated pCO₂ environments. Full life cycle tests on T. japonicus indicated NOEC = 5800 μatm and LOEC = 37,000 μatm. Adult B. japonica showed remarkable resistance to elevated pCO₂ in the acute tests. Embryonic development of B. japonica showed a NOEC = 1500 μatm and LOEC = 5400 μatm. T. japonicus showed high resistance to elevated pCO₂ throughout the life cycle and B. japonica are rather sensitive during the veliger stage when they started to form their shells.     

Spatial variability in selenium and mercury interactions in a key recreational fish species: Implications for human health and environmental monitoring

Selenium’s (Se) protective effects against mercury (Hg) toxicity have been demonstrated; however, this is seldom considered in health assessments, where dietary exposure is still evaluated by Hg concentration alone. Se:Hg ratios and selenium health benefit values (Se HBVs) offer a more comprehensive seafood safety model. Here we describe total mercury (THg), methylmercury (MeHg) and Se concentrations in fish from a Hg-polluted estuary. Spatial variation in THg, MeHg and Se was evident, though all regions maintained Se:Hg ratio values >1. Se HBV varied between regions and in one region mean negative values (−5.17) were evident. This study provides the first evidence that quoting a single all-encompassing Se HBV is not appropriate when species demonstrate strong site fidelity. It highlights the need for research into Se–Hg relationships in environments with established Hg pollution and reinforces the assertion that Se concentration be considered in assessments of human health risk to Hg exposure.     

High-order <Emphasis Type="Italic">h</Emphasis>-adaptive discontinuous Galerkin methods for ocean modelling

In this paper, we present an h-adaptive discontinuous Galerkin formulation of the shallow water equations. For a discontinuous Galerkin scheme using polynomials up to order , the spatial error of discretization of the method can be shown to be of the order of , where is the mesh spacing. It can be shown by rigorous error analysis that the discontinuous Galerkin method discretization error can be related to the amplitude of the inter-element jumps. Therefore, we use the information contained in jumps to build error metrics and size field. Results are presented for ocean modelling problems. A first experiment shows that the theoretical convergence rate is reached with the discontinuous Galerkin high-order h-adaptive method applied to the Stommel wind-driven gyre. A second experiment shows the propagation of an anticyclonic eddy in the Gulf of Mexico. An erratum to this article can be found at     

四川芦山7.0级地震前中小地震P轴方位角CV值的变化

通过对2003年1月1日—2013年4月1日芦山地震前震源区中小地震震源机制解的分析,发现不同阶段的震源机制解在一定程度上反映了强震孕育过程中构造应力场随时间的变化。震源区中小地震的P轴方位角C_V值在芦山M7.0地震发生前有一个上升-下降-上升的过程,只是相比于汶川8.0级地震前C_V值的下降-上升过程经历了更长的时间,这表明四川芦山M7.0地震的孕育经历了长时间的应力积累,与许多研究结果相一致。2007年1月1日—2014年4月1日C_V值空间分布的非均匀性特征在龙门山断裂带南段有显著的增强与减弱过程,对于发震地点可能有一定的指示意义。     

Bacterioplankton dynamics along the gradient from highly eutrophic Pearl River Estuary to oligotrophic northern South China Sea in wet season: implication for anthropogenic inputs

Bacterioplankton abundance (BA) and biomass (BB) from the eutrophic Pearl River Estuary (PRE) to the oligotrophic northern South China Sea (NSCS) were studied in the wet season. BA was significantly higher (p < 0.05) in PRE (12.51 ± 3.52 × 10⁸ cells L⁻¹), than in the continental shelf neritic province (CSNP, 4.95 ± 2.21 × 10⁸ cells L⁻¹) and in the deep oceanic province (OP, 3.16 ± 1.56 × 10⁸ cells L⁻¹). Nutrient-replete PRE waters (DIN > 100 μM and PO₄ > 1 μM) resulted in high chl a and BB, whereas nutrient-depleted offshore waters (DIN <5 μM and PO₄ < 0.5 μM) had low biomass. Temperature (>26 °C) was not the controlling factor of BA. BB was significantly correlated with chl a biomass both in PRE and NSCS. The bacteria to phytoplankton biomass (BB/PB) ratio increased clearly along the gradient from near-shore PRE (0.15) to offshore CSNP (0.93) and deep OP (2.75), indicating the important role of small cells in the open ocean compared to estuarine and coastal zones.     

Whole genome data for omics-based research on the self-fertilizing fish Kryptolebias marmoratus

Genome resources have advantages for understanding diverse areas such as biological patterns and functioning of organisms. Omics platforms are useful approaches for the study of organs and organisms. These approaches can be powerful screening tools for whole genome, proteome, and metabolome profiling, and can be used to understand molecular changes in response to internal and external stimuli. This methodology has been applied successfully in freshwater model fish such as the zebrafish Danio rerio and the Japanese medaka Oryzias latipes in research areas such as basic physiology, developmental biology, genetics, and environmental biology. However, information is still scarce about model fish that inhabit brackish water or seawater. To develop the self-fertilizing killifish Kryptolebias marmoratus as a potential model species with unique characteristics and research merits, we obtained genomic information about K. marmoratus. We address ways to use these data for genome-based molecular mechanistic studies. We review the current state of genome information on K. marmoratus to initiate omics approaches. We evaluate the potential applications of integrated omics platforms for future studies in environmental science, developmental biology, and biomedical research. We conclude that information about the K. marmoratus genome will provide a better understanding of the molecular functions of genes, proteins, and metabolites that are involved in the biological functions of this species. Omics platforms, particularly combined technologies that make effective use of bioinformatics, will provide powerful tools for hypothesis-driven investigations and discovery-driven discussions on diverse aspects of this species and on fish and vertebrates in general.     

Theoretical/numerical model for the transport of non-uniform suspended sediment in open channels

In this paper, we address the transport of multi-disperse suspended sediment mixtures in open channels, via the use of the two-fluid model. To that end, we extend previously developed frameworks for the dilute and non-dilute transport of suspended sediment. Within the scope of the Reynolds-averaged Navier-Stokes (RANS) equations, these modeling frameworks comprise mass and momentum equations for both phases (water and sediment). Here, we calculate the distribution of total volumetric concentration of sediment using two approaches: (1) by considering the mixture as represented by a single size; we call this approach Partial two-fluid model for uniform sediments (PTFMU); and (2) by combining the volumetric concentration of the sediment corresponding to several particle size classes; we call this approach Partial two-fluid model for non-uniform sediments (PTFMNU). In the second approach, we propose a methodology for the computation of the overall velocity of the disperse phase as a function of the velocities of each size class. k-ε type closures to account for the turbulence in the carrier phase (water) are applied. We also consider the coupling between the two phases through the drag force. Velocities of the carrier and disperse phases, and concentrations for each sediment class size are numerically solved by integrating the differential equations over control volumes. In order to validate our models, we compare numerical results to experimental data of Einstein and Chien [H.A. Einstein, N. Chien, Effects of heavy sediment concentration near the bed on velocity and sediment distribution, MRD sediment series report, University of California, Berkley, 1955] and Taggart et al. [W.C. Taggart, C.A. Yermoli, S. Montes, A. Ippen, Effects of sediment size and gradation on concentration profiles for turbulent flow, Massachusetts Institute of Technology, 1972]. Results of mean velocity of the carrier phase are in close agreement with the experimental data. For the prediction of sediment concentrations, we observe that there is a difference in the results using the two approaches mentioned above. We additionally obtain values of the Schmidt number needed to improve the agreement between predictions of the distribution of suspended sediment and the experimental data, and discuss the effect of sediment size and increasing sediment concentration on the values of the Schmidt number.     

可液化场地大直径扩底桩的动力p-y曲线特征研究

可液化场地大直径扩底桩-土动力相互作用p-y曲线研究对扩底桩抗震设计具有重要意义。基于有限差分程序FLAC~(3D),分别建立扩底桩和等直径桩的三维有限差分模型,通过在模型底部输入正弦波,得到可液化场地中不同埋深下扩底桩与等直径桩的桩-土动力相互作用p-y曲线,对两者的动力p-y曲线特征进行对比分析。结果表明:正弦波输入下扩底桩动力p-y曲线多呈倒"S"形,随着埋深增加,动力p-y曲线滞回圈面积及面积增长速度逐渐减小,斜率逐渐增大;扩底桩与等直径桩动力p-y曲线所围成的图形相似,两者动力p-y曲线斜率均随埋深增加逐渐增大,扩底桩动力p-y曲线滞回圈面积及面积增长速度在各埋深处均大于等直径桩,利于能量耗散,抗震性能更好。     

Bacterial accumulation by the Demospongiae Hymeniacidon perlevis: A tool for the bioremediation of polluted seawater

Sponges can filter large amounts of water, which exerts an important grazing impact on free bacteria, an important component of the diet of sponges. We examined the accumulation of bacteria in the Demospongiae (Hymeniacidon perlevis). Analyses were performed on homogenates from unstarved and starved sponges in seawater from their sampling site (the Ionian Sea). Culturable heterotrophic bacteria (22 °C), total culturable bacteria (37 °C) and vibrios densities were measured on marine agar 2216, plate count agar and TCBS agar, respectively. Total and fecal coliforms, as well as fecal streptococci, were determined by the most probable number method (MPN). H. perlevis was able to accumulate all of the six microbiological groups. Bacterial groups differed in their resistance to digestion by H. perlevis. Our data suggest that H. perlevis may accumulate, remediate and metabolize bacteria and that they may be employed as a useful bioindicator and bioremediator.     

Investigation of the mud crab (Scylla serrata) as a potential bio-monitoring species for tropical coastal marine environments of Australia

Mud crabs, Scylla serrata, were sampled from four estuaries (the Normanby, Herbert, Burdekin and Fitzroy Rivers) along the coast of northern Queensland, Australia, representing a pollution gradient from low to high contamination based upon previous chemical monitoring. Four biomarkers; glutathione-S-transferase (GST) activity, cholinesterase (ChE) inhibition and the urinary metabolite concentrations of naphthalene (NPH) and benzo-a-pyrene (BaP) were evaluated in S. serrata hepatopancreas, haemolymph and urine. Site-specific evidence of elevated GST activity and BaP metabolite concentrations and significant ChE inhibition was detected. Biomarker responses from this field study provide evidence of contaminant exposure of S. serrata from river estuaries along the coast of northern Queensland and indicate that further investigation is warranted. Based on the current results, and with further work on characterising the dose-response and seasonal variation in this species, mud crabs have great potential as indicator species for water quality and ecosystem monitoring programs across tropical coastal regions of Australia.     

Saharan dust and phosphatic fidelity: A three-dimensional biogeochemical model of Trichodesmium as a nutrient source for red tides on the West Florida Shelf

The availability of iron within the surface waters of the broad, oligotrophic West Florida Shelf (WFS) controls periodic blooms of the pelagic marine cyanobacterium Trichodesmium. Summer delivery of Saharan dust provided adequate iron (Fe) to shift limitation of growth to the availability of phosphorus (P). Florida's rivers drain Miocene phosphorus deposits to provide the WFS with freshwater nutrient supplies at molar dissolved inorganic nitrogen/phosphate (DIN/PO₄) ratios of <6. These diazotrophs draw upon ubiquitous stocks of dissolved nitrogen gas, once stimulated by Fe-deposition within P-replete waters of the WFS.     

Dependence of eelgrass (Zostera marina) light requirements on sediment organic matter in Massachusetts coastal bays: Implications for remediation and restoration

Using a calibrated bio-optical model we determined that the optical water quality conditions in several nitrogen-impaired embayments and in one unimpaired system were within the range of values known to support eelgrass growth. We also used the model to identify a range of light requirements for eelgrass (Zostera marina). Higher eelgrass light requirements, expressed as a percentage of surface-incident irradiance, corresponded with higher sediment organic matter content. These results corroborated findings by previous studies which indicate a generalized relationship: seagrasses growing in turbid conditions with poorer water and sediment quality have higher light requirements than those growing in less degraded conditions. The mechanistic reason for the variation in light requirements is still not completely explained and cannot be attributed to a single independent variable. Varying light requirement have important implications for eelgrass protection and should be considered when setting restoration targets for eelgrass in water quality and nitrogen remediation programs.     

P/Ca in coral skeleton as a geochemical proxy for seawater phosphorus variation in Daya Bay, northern South China Sea

The P/Ca ratio in coral skeletons is considered to be a direct proxy for the nutrient P in seawater. We examined the reliability of this proxy by analyzing P/Ca in a Porites coral collected from a eutrophic area in the northern South China Sea. P concentrations were significantly higher compared to previously reported values from pristine and open seas, corresponding to the elevated nutrients from the study site. We compared coral P/Ca against recent in-situ records of seawater P concentrations. Our results show that P/Ca was primarily a function of TP sw rather than PO₄sw, and that the signal of skeletal P included not only phosphate, but also organic phosphorus. Besides the form of skeletal P, sub-sampling and analytical procedures and the distinctive nutrient regime were the most reasonable explanations for our results. We suggest that total P in coral skeletons may be an efficient proxy for seawater P variations and associated phytoplankton dynamics in eutrophic environments.