Impacts of Climate-Related Drivers on the Benthic Nutrient Filter in a Shallow Photic Estuary

In shallow photic systems, the benthic filter, including microphytobenthos and denitrifiers, is important in preventing or reducing release of remineralized NH₄ ⁺ to the water column. Its effectiveness can be impacted by climate-related drivers, including temperature and storminess, which by increasing wind and freshwater delivery can resuspend sediment, reduce salinity and deliver nutrients, total suspended solids, and chromophoric dissolved organic matter (CDOM) to coastal systems. Increases in temperature and freshwater delivery may initiate a cascade of responses affecting benthic metabolism with impacts on sediment properties, which in turn regulate nitrogen cycling processes that either sequester (via microphytobenthos), remove (via denitrification), or increase sediment nitrogen (via remineralization, nitrogen fixation, and dissimilatory nitrate reduction to ammonium). We conducted a seasonal study at shallow stations to assess the effects of freshwater inflow, temperature, wind, light, and CDOM on sediment properties, benthic metabolism, nitrogen cycling processes, and the effectiveness of the benthic filter. We also conducted a depth study to constrain seasonally varying parameters such as temperature to better assess the effects of light availability and water depth on benthic processes. Based on relationships observed between climatic drivers and response variables, we predict a reduction in the effectiveness of the benthic filter over the long term with feedbacks that will increase effluxes of N to the water column with the potential to contribute to system eutrophication. This may push shallow systems past a tipping point where trophic status moves from net autotrophy toward net heterotrophy, with new baselines characterized by degraded water quality.     

Benthic and Pelagic Primary Production in Different Nutrient Regimes

Benthic flora can contribute significantly to gross primary production (GPP) of shallow coastal waters where light reaches the sea bottom. We quantified and compared benthic and pelagic GPP along nutrient gradients in time and space in the shallow estuary, Limfjorden, Denmark, based on monitoring data combined with historical information. Limfjorden experienced a shift from a pristine, benthic-dominated clear water regime with high total GPP in the early twentieth century to a eutrophic, plankton-dominated regime still with high total GPP in the 1980s when nutrient loadings peaked. Recent reductions in nutrient loadings reduced pelagic GPP, particularly in spring, but water clarity and benthic GPP did not increase correspondingly, so total GPP declined. The most nutrient-rich basins have remained plankton-dominated, with benthic vegetation constrained to shallow waters. The results support existing evidence that total GPP of shallow coastal areas does not increase systematically with eutrophication. Furthermore, the results suggest that total GPP may decline temporarily during oligotrophication as pelagic GPP declines, while feedback mechanisms delay or prevent restoration to a state with benthic dominance of GPP.     

Optical Changes in a Eutrophic Estuary During Reduced Nutrient Loadings

Loss of water clarity is one of the consequences of coastal eutrophication. Efforts have therefore been made to reduce external nutrient loadings of coastal waters. This paper documents improvements to water clarity between 1985 and 2008–2009 at four stations in the microtidal estuary Roskilde Fjord and find significant relationships to freshwater nutrient loadings. The paper then investigates to which extent changes in phytoplankton biomass (chlorophyll a (Chl a)), non-algal particulate organic matter (POM*), and residual attenuation in the water (K _b), respectively, can account for this optical improvement. Vertical light attenuation (K _d) declined, on average, by 34 %, accompanying a 71 % reduction of Chl a and an 80 % reduction of POM*. Residual attenuation declined by 26 % over the period in accordance with a measured 34 % decline of dissolved organic nitrogen. Analysis of simultaneous changes in light attenuation and Secchi depth also suggested a reduction of the scatter-to-absorption ratio over time. Considering the stronger reductions of particle concentrations than dissolved organic matter, the contribution of residual attenuation to vertical attenuation increased from 54 to 74 % in 1985 to 78 to 85 % in 2008–2009. Overall, efforts to reduce nutrient loading and improve water clarity appeared to have had a larger impact on POM* than on Chl a and colored dissolved organic matter concentrations in the estuary, which can account for the decrease in the scatter-to-absorption ratio. These optical changes lead to larger improvements of Secchi depth than of vertical light attenuation. The consequence of this is an overestimation (0.45–1.48 m) of the predicted increase of potential seagrass depth limits when based on Secchi depth rather than K _d.     

Spatial and Temporal Variability of Benthic Oxygen Demand and Nutrient Regeneration in an Anthropogenically Impacted New England Estuary

Strong benthic–pelagic coupling is an important characteristic of shallow coastal marine ecosystems. Building upon a rich history of benthic metabolism data, we measured oxygen uptake and nutrient fluxes across the sediment–water interface along a gradient of water column primary production in Narragansett Bay, RI (USA). Despite the strong gradients seen in water column production, sediment oxygen demand (SOD) and benthic nutrient fluxes did not exhibit a clear spatial pattern. Some of our sites had been studied in the 1970s and 1980s and thus allowed historical comparison. At these sites, we found that SOD and benthic fluxes have not changed uniformly throughout Narragansett Bay. In the uppermost portion of the bay, the Providence River Estuary, we observed a significant decrease in dissolved inorganic phosphorus fluxes which we attribute to management interventions. At another upper bay site, we observed significant declines in SOD and dissolved inorganic nitrogen fluxes which may be linked to climate-induced decreases in water column primary production and shifts in bloom phenology. In the 1970s, benthic nutrient regeneration supplied 50% to over 200% of the N and P needed to support primary production by phytoplankton. Summer nutrient regeneration in the Providence River Estuary and Upper bay now may only supply some 5–30% of the N and 3–20% of the P phytoplankton demand.     

The Impact of Hurricane Katrina on the Coastal Vegetation of the Weeks Bay Reserve,Alabama from NDVI Data

Normalized Difference Vegetation Index (NDVI) data were used to investigate vegetation changes after Hurricane Katrina (2005) for the Weeks Bay Reserve and surrounding area of coastal AL. Landsat 5 satellite images were acquired before landfall (March 24, 2005), after landfall (September 16, 2005), and 8 months after landfall (April 28, 2006). The March 2005 to September 2005 image comparison showed that average NDVI values decreased by 49% after landfall. Continuing into the next year, average NDVI values were −44% lower in April 2006 than they were in March 2005. Among habitat types, the estuarine emergent wetland experienced the largest average NDVI value decrease (−64%). The estuarine emergent wetland NDVI values continued to decrease by −27% from September 2005 to April 2006, whereas other habitats increased in NDVI. This continued suppression of NDVI values was attributed to increased salinity from the storm surge and to regional drought conditions that occurred after landfall. These results provide insight into the sensitivity of coastal vegetation from the interactions of both tropical cyclones and long-term environmental conditions.     

Feedback Mechanisms Between Cyanobacterial Blooms,Transient Hypoxia,and Benthic Phosphorus Regeneration in Shallow Coastal Environments

We investigated the dissolved oxygen metabolism of the Curonian Lagoon (Baltic Sea) to assess the relative contributions of pelagic and benthic processes to the development of transient hypoxic conditions in shallow water habitats. Metabolism measurements along with the remote sensing-derived estimates of spatial variability in chlorophyll a were used to evaluate the risk of hypoxia at the whole lagoon level. Our data demonstrate that cyanobacterial blooms strongly inhibit light penetration, resulting in net heterotrophic conditions in which pelagic oxygen demand exceeds benthic oxygen demand by an order of magnitude. The combination of bloom conditions and reduced vertical mixing during calm periods resulted in oxygen depletion of bottom waters and greater sediment nutrient release. The peak of reactive P regeneration (nearly 30 μmol m^?2 h^?1) coincided with oxygen depletion in the water column, and resulted in a marked drop of the inorganic N:P ratio (from >40 to <5, as molar). Our results suggest a strong link between cyanobacterial blooms, pelagic respiration, hypoxia, and P regeneration, which acts as a feedback in sustaining algal blooms through internal nutrient cycling. Meteorological data and satellite-derived maps of chlorophyll a were used to show that nearly 70 % of the lagoon surface (approximately 1,000 km²) is prone to transient hypoxia development when blooms coincide with low wind speed conditions.     

Seasonal Alternation Between Groundwater Discharge and Benthic Coupling as Nutrient Sources in a Shallow Coastal Lagoon

Submarine groundwater discharge (SGD) is now recognized as an important source of nutrients and freshwater to some coastal environments. We studied a shallow coastal lagoon (Little Lagoon, AL, USA) in the northern Gulf of Mexico that lacks riverine inputs but has been suspected to receive significant SGD. We observed persistent salinity gradients between the east and west ends of the lagoon and the pass connecting it to the Gulf of Mexico. Covariance between salinity in the lagoon and the groundwater tracer ²²²Rn indicated that SGD was responsible for the salinity gradients and is the primary source of freshwater to the lagoon. Cluster analysis of 246 biweekly samples based on temperature, salinity, and two proxies of SGD revealed two hydrographic regimes with different drivers for nutrient inputs. In samples characterized by high discharge and low temperatures (generally December–April), total nitrogen (TN) was negatively correlated with salinity, while total phosphorus (TP) was positively correlated with temperature. Total nitrogen in the groundwater was very high (0.36–4.80 mM) while total phosphorus was relatively low (0.3–2.3 μM), consistent with SGD as the source of TN during the high-discharge periods. In periods with low discharge and higher temperatures (approx. May–November), TN and TP had strong positive correlations with temperature and are inferred to originate from benthic efflux. Seasonal changes in nutrient stoichiometry in the lagoon water column also indicate an alternation between low TN/TP sediments and high TN/TP groundwater as the primary sources of nitrogen in this system.     

Response of resource excavations in Mobile Bay, Alabama, to extreme forcing

Fossil reef deposits of the American oyster,Crassostrea virginica, are a common component of the near surface sediments in the middle and upper reaches of Mobile Bay, northern Gulf of Mexico. Mining of these deposits occurred from 1946 through 1982 in open areas of undisturbed bay bottom, outside of the shipping channel corridors, in water depths of 3–5 m. The mining process resulted in the formation of pit to furrow-shaped depressions with elevated rims at some sites and troughs and ridges in other areas. Studies carried out in the early 1970s predicted normal physical processes would restore the bottom to pre-shell mining conditions within 1 yr, thus minimizing any long-term effects on the Mobile Bay estuary. However, over the period 1974–1976 unfilled excavations, some with raised rims and ridges, were observed where mining had occurred 3–5 yr earlier. In addition, the depressions tended to be sites of relatively high salinity, hypoxic to anoxic water. In 1992–1993, close grid bathymetric surveys produced no indication of either depressions or raised features at any of the old mining sites. Evidence suggests this leveling of the bay’s bathymetry was the result of two major hurricanes, Frederic in 1979 and Elena in 1985, which mobilized and redistributed significant quantities of sediments within Mobile Bay. These findings indicate currents and waves associated with Mobile Bay’s normal tidal activity and annual recurrent storms were acting very slowly to refill depressions and flatten elevated features. In contrast, the direct impact of major hurricanes appears to have served as an effetive agent to return Mobile Bay’s bathymetry to a state similar to pre-shell mining conditions.     

Decadal Changes in Water Quality and Net Productivity of a Shallow Danish Estuary Following Significant Nutrient Reductions

We utilized an extensive data set (1977–2013) from a water quality monitoring program to investigate the recovery of a Danish estuary following large reductions in total phosphorus (TP) and total nitrogen (TN) loading. Monthly rates of net transport and biogeochemical transformation of dissolved inorganic nitrogen (DIN) and phosphorus (DIP) were computed in two basins of the estuary using a box model approach, and oxygen-based rates of net ecosystem production (NEP) were determined. Since 1990, nutrient loading was reduced by 58 % for nitrogen and 80 % for phosphorus, causing significant decreases in DIN (60 %) and DIP (85 %) concentrations. Reductions in nutrient loadings and concentrations reduced annual chlorophyll levels by 50 % in the inner estuary and improved Secchi depth by approximately 1 m during the same period, particularly in the summer period. In the outer, deeper region of the estuary trends in water quality was less evident. Improvements in the inner estuary were strongly coupled to declines in DIN. Thresholds of DIN and DIP concentrations limiting phytoplankton growth indicated that both regions of the estuary were nitrogen limited. NEP rates indicated the development of more net autotrophic conditions over time that were likely associated with higher benthic primary production stimulated by improved light conditions. Box model computations revealed a modest reduction in summer net production of DIP over time, despite the persistence of elevated fluxes for several years after external loads were reduced. Since the mid-1990s, nutrient loading and transformation were stable while nutrient concentrations continued to decline and water quality improved in the inner estuary. The oligotrophication trajectory involved an initial fast transformation and modest retention of nutrients followed by a gradual decline in the rate of improvement towards a new stable condition.     

Benthic exchange of nutrients in Galveston Bay, Texas

Nutrient regeneration rates were determined at three sites increasing in distance from the Trinity River, the main freshwater input source, to Galveston Bay, Texas, from 1994 through 1996. Diffusive fluxes generally agreed in direction with directly measured benthic fluxes but underestimated the exchange of nutrients across the sediment-water interface. While the fluxes of ammonium and phosphate were directed from the sediment into the overlying waters, the fluxes of silicate and chloride changed in both magnitude and direction in response to changing Trinity River flow conditions. Oxygen fluxes showed benthic production during both summer 1995 and winter 1996, while light-dark deployments showed production-consumption, respectively. Benthic inputs of nutrients were higher at either the middle or outer Trinity Bay regions, most likely due to a higher quality and quantity of the autochthonous organic matter deposited. This feature is consistent with and gives evidence for previously observed non-conservative mixing behaviors reported for nutrients in this region of Galveston Bay. Calculated turnover times, between 7 to 135 d for phosphate, 4 to 56 d for silicate, and 0.3 to 10 d for ammonium were significantly shorter than the average Trinity Bay water residence time of 1.5 yr for the period September 1995 through October 1996. During periods of decreased Trinity River flow and increased residence times, benthic inputs of ammonium and phosphate were 1 to 2 orders of magnitude greater than Trinity River inputs and were the dominant input source of these nutrients to Trinity Bay. The sediments, a sink for silicate when overlying water column concentrations of silicate were elevated, became a source of silicate to the overlying waters of Trinity Bay under reduced flow, high salinity conditions.     

Nutrient dynamics in pore water of tidal marshes near the Yangtze Estuary and Hangzhou Bay, China

Tidal marshes act as a buffer system for nutrients in the pore water and play important roles in controlling the budget of nutrients and pollutants that reach the sea. Spatial and seasonal dynamics of pore water nutrients were surveyed in three tidal marshes (Chongming Island, Hengsha Island, and Fengxian tidal flat) near the Yangtze Estuary and Hangzhou Bay from August 2007 to May 2008. Nutrient variations in pore water closely followed seawater quality in the estuaries, while the average concentration of NH₄ ⁺–N, the main form of inorganic nitrogen in pore water, was over two orders of magnitude higher than that in seawater which was dominated by nitrate. NH₄ ⁺–N export (13.81 μmol m^?2 h^?1) was lower than the import of (NO₃ ^?+NO₂ ^?)–N (?24.17 μmol m^?2 h^?1) into sediment over the 1-year period, hence reducing N-eutrophication in coastal waters. The export of SiO₃ ^2?–Si and PO₄ ^3?–P from tidal marshes regulated nutrient level and composition and lifted the ratio beyond potentidal element limitation in the coastal system. Moreover, macrophyte plants (Spartina alterniflora and Phragmites australis) played significant roles in controlling nutrient concentration in pore water and its exchange between marshes and estuaries. Fengxian marsh was characterized by higher nutrient concentrations and fluxes than other marshes in response to the more serious eutrophication in Hangzhou Bay than in the Yangtze Estuary.     

Estimating Benefits in a Recovering Estuary: Tampa Bay,Florida

Restoration and preservation of riparian forests and coastal marshes provides nutrient removal and other biochemical and physical functions which may preclude, reduce, or delay the need for additional water treatment, while also protecting human health. We examined the ecosystem goods and related potential cost savings for the Tampa Bay community from seagrass expansion (more than 3,100 ha since 1990), coastal marsh, and mangrove restoration/recovery (more than 600 ha since 1990), and habitat that has been maintained or preserved. Habitats in and around Tampa Bay provide nutrient reductions equivalent to just over US$22 million per year in avoided wastewater treatment plant costs. Future accrual of value associated with maintaining the ecosystem good of usable clean water could rapidly increase to as high as ～US$3 billion per year, when one takes into account the additional costs of water treatment and storm water diversion infrastructure that is likely as the region’s population continues to grow. There is additional value accrual close to a quarter million dollars per year based on avoided social costs to the global community due to greenhouse gases sequestered by bay habitats. Most human beneficiaries associated with the maintenance of usable clean water in Tampa Bay are part of the surrounding regional community. The large current and future cost savings for the community surrounding Tampa Bay and additional benefits for the global community speak to the value of maintaining a healthy bay through past and continued restoration and preservation efforts.     

The effects of dock shading on the seagrass Halodule wrightii in Perdido Bay, Alabama

Aboveground and belowground biomass, density, blade length, and chlorophyll content of seagrass growing directly under docks were compared with adjacent unshaded sites. The amount of light reduction due to dock shading was measured using quantum spherical irradiance meters. Seagrasses were present under docks; they were shaded such that light levels were 19% and 16% of surface irradiance, at shallow and deep sites, respectively. Shoot density was 40–47% lower in shaded plots than in unshaded plots; total biomass was 30–33% lower in shaded plots than in unshaded plots. In contrast, blade length and chlorophyll content were increased at shaded plots relative to unshaded plots. Seagrasses were not found under docks at light levels less than 14% of surface irradiance. These results are in agreement with published in situ compensation irradiance estimates of 15–18% for Halodule wrightii in Texas coastal waters. Shading effects were most apparent between the hours of 1000 and 1500; therefore, the light received during the early morning and late afternoon hours may be critical for plants growing under docks. The north-south orientation of the docks in this study is likely an important factor contributing to the continued survival and growth of the seagrasses.     

The application of a segmented tidal mixing model to the Great Bay Estuary,N.H.

Measurements show that in general salt is vertically well-mixed everywhere in the Great Bay Estuary, New Hampshire except near the river entrances at the head of the estuary. Dyer and Taylor’s (1973) modified version of Ketchum’s segmented tidal prism model has been applied to the Great Bay Estuarine System in order to predict high and low water salinity distribution for a specified river flow. The theory has been modified here to account for the mixing which occurs at the junction of two branches of an estuary. The mixing parameter, which in this model is related to the tidal excursion of water in the estuary, has been determined for different segments in the estuary on the basis of a comparison between predictions and a comprehensive data set obtained for a low river flow period. Using a mixing parameter distribution based on the low river flow calibration procedure the salinity distribution has been predicted for high river flow. The resulting salinity distribution compares favorably with observations for most of the estuary. The corresponding flushing times for water parcels entering at the head of the estuary during periods of low and high river flow is 54.5 and 45.9 tidal cycles respectively.     

Effects of Hypoxia on Fish Survival and Oyster Growth in a Highly Eutrophic Estuary

Human land use activities around estuaries can result in high levels of eutrophication. At Elkhorn Slough estuary, a highly eutrophic California estuary, we investigated the effects of impaired water quality on two stress-tolerant estuarine species, a common fish, the staghorn sculpin, Leptocottus armatus and a foundational invertebrate, the Olympia oyster, Ostrea lurida. We caged the two indicator species at six wetlands with different levels of water quality impairment, four of which had restricted tidal flow. We also recorded water quality parameters simultaneously at all sites using YSI sondes, and sampled nutrients and chlorophyll-a monthly, building on the National Estuarine Research Reserve System-wide Monitoring Program. We found that the monitored environmental variables predicted ecological responses by the indicator species. In particular, we found that the duration and severity of hypoxia were negatively correlated with fish survival and oyster growth. Further, our results corroborate previous studies that artificial tidal restriction leads to increased hypoxia stress. We conclude that large diurnal fluctuations in dissolved oxygen and extended nighttime hypoxia can have lethal and sub-lethal effects even on stress-tolerant organisms in the estuary. While laboratory experiments have often shown such effects, it is relatively rare to demonstrate negative effects of oxygen variation with in situ experiments, which provide stakeholders with concrete evidence for impaired water quality at local wetlands. Tidally restricted sites, which experience the largest fluctuations in dissolved oxygen and longest periods of hypoxia, harbor conditions harmful to vertebrates and invertebrates in the estuary. Reversing the anthropogenically induced low oxygen levels, by restoring more natural tidal exchange and by decreasing agricultural runoff, could improve the survival and growth of important estuarine organisms.     

Isotopic Approach to Determining the Fate of Ammonium Regenerated from Sediments in a Eutrophic Sub-estuary of Waquoit Bay,MA

We measured fluxes of NH₄⁺ and NO₃⁻ and δ¹⁵N of NH₄⁺, sediment, and porewater NH₄⁺ from incubated sediment cores along a nitrate gradient and in different seasons from Childs River, MA. NH₄⁺ flux was low at the downstream site with the lowest concentration of organic matter (high salinity) but otherwise did not differ along the estuary. The δ¹⁵N of regenerated NH₄⁺ ranged from +6.1‰ to +15.3‰ but did not vary significantly with season or salinity; the mean for the entire estuary was +10.4 ± 0.5‰. Based on differences between the δ¹⁵N of regenerated NH₄⁺ and sediment, and expected isotopic fractionation due to remineralization, we concluded that nitrification occurred after remineralization of NH₄⁺. Differences between the δ¹⁵N of regenerated NH₄⁺ and the δ¹⁵N of porewater NH₄⁺ provided further evidence of nitrification. We estimated that 11% to 48% of remineralized NH₄⁺ underwent coupled nitrification–denitrification before release into the water column. In spite of losses to denitrification, NH₄⁺ flux released 1.4 mol N m⁻² year⁻¹ to the water column and could provide 42% of phytoplankton nitrogen requirements.     

Environmental Factors Contributing to the Development and Demise of a Toxic Dinoflagellate (<Emphasis Type="Italic">Karlodinium veneficum</Emphasis>) Bloom in a Shallow,Eutrophic, Lagoonal Estuary

A dense bloom of the ichthyotoxic dinoflagellate Karlodinium veneficum was discovered in the Neuse River Estuary, North Carolina, on 19 October 2006 and was associated with four subsequent fish kills. Microscopic, photopigment, DNA, and toxicological techniques confirmed bloom identity and toxicity. High-resolution spatio-temporal data from ship-board and fixed automated sampling stations provided a unique opportunity to investigate the environmental conditions that initiated, maintained, and terminated the K. veneficum bloom. Bloom initiation and growth were favored by high nutrient availability and reduced dispersal during the period of declining riverine discharge after Tropical Storm Ernesto. K. veneficum out-competed other co-occurring dinoflagellates, perhaps because of the production of karlotoxins that are known to act as grazing deterrents and to facilitate mixotrophic feeding. Once the bloom was established, small-scale hydrodynamic processes, coupled with vertical migration, concentrated cells along a frontal convergence to high densities (>200,000 cells per milliliter). By 26 October 2006, wind mixing and possible nutrient stress disrupted the bloom. Release of cell-bound toxins during the bloom collapse likely accounted for the associated fish kill events where fish were reported as exhibiting typical symptoms of karlotoxin poisoning. The dynamics of this bloom underscore the tight control of harmful algal blooms by meteorological forcing, hydrology, and sediment nutrient input in this shallow lagoonal estuary.     

Importance of CDOM Distribution and Photoreactivity in a Shallow Texas Estuary

This study examined freshwater discharge of dissolved organic matter (DOM) to the shallow Lavaca–Matagorda (LM) Bay estuarine system along the central Texas coast and investigated whether chromophoric DOM (CDOM) photochemical reactions have the potential to stimulate microbial activity within LM estuarine waters. Dissolved organic carbon (DOC) concentrations ranged from 3 to 10 mg C l⁻¹ and CDOM levels (reported as a ₃₀₅) ranged from 8 to 77 m⁻¹ during April and July, 2007, when the LM system was experiencing very high freshwater inputs. DOC and CDOM levels were well-correlated with salinities > 3, but exhibited considerable variability at salinities < 3. CDOM photobleaching rates (i.e., decrease in a ₃₀₅ resulting from exposure to solar radiation) for estuarine samples ranged from 0.014 to 0.021 h⁻¹, corresponding to photobleaching half-lives of 33–50 h. Our data indicate when Matagorda Bay waters photobleach; dissolved organic carbon utilization is enhanced perhaps due to enhanced microbial respiration of biologically labile photoproducts (BLPs). Net ecosystem metabolism calculations indicate that most of the LM system was net heterotrophic during our study. We estimate that BLP formation could support up to 20% of the daily microbial respiratory C demand in LM surface waters and combined with direct photochemical oxygen consumption could have an important influence on O₂ cycles in the LM system.