Evaluating the impact of spatio-temporal scale on CPUE standardization

This study focused on the quantitative evaluation of the impact of the spatio-temporal scale used in data collection and grouping on the standardization of CPUE(catch per unit effort).We used the Chinese squid-jigging fishery in the northwestern Pacific Ocean as an example to evaluate 24 scenarios at different spatio-temporal scales,with a combination of four levels of temporal scale(weekly,biweekly,monthly,and bimonthly)and six levels of spatial scale(longitude×latitude:0.5°×0.5°,0.5°×1°,0.5°×2°,1°×0.5°,1°×1°,and 1°×2°).We applied generalized additive models and generalized linear models to analyze the24 scenarios for CPUE standardization,and then the differences in the standardized CPUE among these scenarios were quantified.This study shows that combinations of different spatial and temporal scales could have different impacts on the standardization of CPUE.However,at a fine temporal scale(weekly)different spatial scales yielded similar results for standardized CPUE.The choice of spatio-temporal scale used in data collection and analysis may create added uncertainty in fisheries stock assessment and management.To identify a cost-effective spatio-temporal scale for data collection,we recommend a similar study be undertaken to facilitate the design of effective monitoring programs.     

Importance of weighting for multi-variable habitat suitability index model: A case study of winter-spring cohort of Ommastrephes bartramii in the Northwestern Pacific Ocean

Weighting values for different habitat variables used in multi-factor habitat suitability index (HSI) modeling reflect the relative influences of different variables on distribution of fish species. Using the winter-spring cohort of neon flying squid (Ommastrephes bartramii) in the Northwestern Pacific Ocean as an example, we evaluated the impact of different weighting schemes on the HSI models based on sea surface temperature, gradient of sea surface temperature and sea surface height. We compared differences in predicted fishing effort and HSI values resulting from different weighting. The weighting for different habitat variables could greatly influence HSI modeling and should be carefully done based on their relative importance in influencing the resource spatial distribution. Weighting in a multi-factor HSI model should be further studied and optimization methods should be developed to improve forecasting squid spatial distributions.     

Modeling a habitat suitability index for the eastern fall cohort of Ommastrephes bartramii in the central North Pacific Ocean

The eastern fall cohort of the neon flying squid, Ommastrephes bartramii, has been commercially exploited by the Chinese squid jigging fleet in the central North Pacific Ocean since the late 1990s. To understand and identify their optimal habitat, we have developed a habitat suitability index (HSI) model using two potential important environmental variables - sea surface temperature (SST) and sea surface height anomaly (SSHA) - and fishery data from the main fishing ground (165°-180°E) during June and July of 1999-2003. A geometric mean model (GMM), minimum model (MM) and arithmetic weighted model (AWM) with different weights were compared and the best HSI model was selected using Akaike’s information criterion (AIC). The performance of the developed HSI model was evaluated using fishery data for 2004. This study suggests that the highest catch per unit effort (CPUE) and fishing effort are closely related to SST and SSHA. The best SST- and SSHA-based suitability index (SI) regression models were SISST-based = 0.7SIeffort-SST + 0.3 SICPUE-SST, and SISSHA-based = 0.5SIeffort-SSHA + 0.5SICPUE-SSHA, respectively, showing that fishing effort is more important than CPUE in the estimation of SI. The best HSI model was the AWM, defined as HSI=0.3SISST-based+ 0.7SISSHA-based, indicating that SSHA is more important than SST in estimating the HSI of squid. In 2004, monthly HSI values greater than 0.6 coincided with the distribution of productive fishing ground and high CPUE in June and July, suggesting that the models perform well. The proposed model provides an important tool in our efforts to develop forecasting capacity of squid spatial dynamics.     

水温变动对2009年西北太平洋柔鱼产量下降的影响

分布在西北太平洋的柔鱼是我国远洋鱿钓渔业的重要捕捞对象,近些年来其产量一直处在稳定的水平。然而,2009年8～10月旺汛期间在传统作业渔场(150°E～165°E、38°E～46°E)柔鱼产量出现大幅度下降,其日产量仅为正常年份的一半。为此,根据2007～2009年8～10月我国在西北太平洋鱿钓生产数据,以及产卵场表层水温,探讨2009年柔鱼产量下降及渔场变动的原因。研究表明,其产量出现下降的原因可能有2个:(1)柔鱼产卵场(20°N～30°N,130°E～170°E)黑潮大弯曲的发生,使得21℃等温线向南偏移,使得柔鱼资源补充量受到影响,从而使得渔汛期间柔鱼产量的下降;(2)旺汛期间(8～9月)传统作业渔场(42°N～46°N,150°E～165°E)的100m水层有一个明显冷水南下,分布位置为154°E～156°E,将传统作业渔场(150E～165°E)一分为二,向南的前锋(水温低于5℃)到达42°N,明显不同于正常年份,使得作业渔场的范围明显缩小,不适合柔鱼的集群,导致产量出现大幅下降。     

Dicroerisma （Actiniscales,Dinophyceae） in the open Pacific Ocean,a gymnodinioid dinoflagellate with an endoskeleton

This study is the first to describe and illustrate the dinoflagellate genus Dicroerisma in the open Pacific Sea and in the southern hemisphere. Eleven individuals ascribed to Dicroerisma psilonereiella were encountered in subsurface waters （〉70 m depth） from 34°N to 33°S. Another specimen that differs from the type is also illustrated. These findings reveal that Dicroerisma is a widespread genus and that there is tentative existence of another species within the genus.     

A review of interaction between neon flying squid (<Emphasis Type="Italic">Ommastrephes bartramii</Emphasis>) and oceanographic variability in the North Pacific Ocean

The neon flying squid (Ommastrephes bartramii) is a short-lived opportunistic species widely distributed in subtropical and temperate waters in the North Pacific Ocean. The life cycle of O. bartramii from planktonic eggs to nektonic adults is closely linked to oceanographic conditions. The fluctuations in O. bartramii abundance and distribution tend to increase and widen continuously due to the heavy influences of ocean-climate events on various spatio-temporal scales. In this study, we reviewed the interaction between O. bartramii and oceanography variability in the North Pacific with respect to large-scale climatic-oceanic phenomena including El Niño, La Niña, Kuroshio, Oyashio and Pacific Decadal Oscillation (PDO), as well as regional environmental variables such as sea surface temperature (SST), sea surface height (SSH), sea surface salinity (SSS), chlorophyll-a (Chl-a) concentration, and plankton density. The population dynamics of O. bartramii is mediated mainly by meso- and large-scale climatic-oceanic events (e.g., Kuroshio and Oyashio Currents) rather than other local environmental conditions (e.g., SST and Chl-a concentration), because all of the oceanographic influences are imposed on the context of large-scale climate changes (e.g., PDO). An unstructured-grid finite-volume coastal ocean model coupled with an individual-based model is proposed to simulate relevant physical-biological oceanographic processes for identifying ocean-climate influence and predicting O. bartramii distribution and abundance in the North Pacific. Future research needs to be focused on improving the knowledge about early life history of O. bartramii and evaluating the relationship between marine physical environment and two separate passive drifting life stages of O. bartramii including free-floating eggs and planktonic paralarvae.     

Fluctuation in <Emphasis Type="Italic">Ommastrephe bartrami</Emphasis> yield in the North Pacific

The fluctuation in Ommastrephe bartrami yield from 1995 to 2001 in the North Pacific was shown obvious, on which this study was conducted using data of sea surface temperature (SST), chlorophyll-a (chl-a) and statistical production. The study shows that, cool water and low food abundance caused by abnormal Kuroshio resulted in the reduction in abundance of O. bartrami, which was worsened by excessive catch and the unawareness to local fishery resources protection. Supported by National Key Project for Basic Research of China (2005CB422300)     

The antitumor effect of bromophenol derivatives <Emphasis Type="Italic">in vitro</Emphasis> and <Emphasis Type="Italic">Leathesia nana</Emphasis> extract <Emphasis Type="Italic">in vivo</Emphasis>

To investigate the antitumor effect of bromophenol derivatives in vitro and Leathesia nana extract in vivo, six bromophenol derivatives 6-(2,3-dibromo-4,5-dihydroxybenzyl)-2,3-dibromo-4,5-dihydroxy benzyl methyl ether (1), (+)-3-(2,3-dibromo-4,5-dihydroxyphenyl)-4-bromo-5,6-dihydroxy-1,3-dihydroisobenzofuran (2), 3-bromo-4-(2,3-dibromo-4,5-dihydroxybenzyl)-5-methoxymethyl-pyrocatechol (3), 2,2′,3,3′-tetrabromo-4,4′,5,5′-tetrahydroxy-diphenylmethane (4), bis(2,3-dibromo-4,5-dihydroxybenzyl) ether (5), 2,2′,3-tribromo-3′,4,4′,5-tetrahydroxy-6′-ethyloxymethyldiphenylmethane (6) were isolated from brown alga Leathesia nana, and their cytotoxicity were tested by MTT assays in human cancer cell lines A549, BGC-823, MCF-7, B16-BL6, HT-1080, A2780, Bel7402 and HCT-8. Their inhibitory activity against protein tyrosine kinase (PTK) with over-expression of c-kit was analyzed also by ELISA. The antitumor activity of ethanolic extraction of Leathesia nana (EELN) was evaluated on S₁₈₀-bearing mice. All compounds showed very potent cytotoxicity against all of the eight cancer cell lines with IC₅₀ below 10 μg/mL. In PTK inhibition study, all bromophenol derivatives showed moderate inhibitory activity and compounds 2, 5 and 6 showed significant bioactivity with the inhibition ratio of 77.5%, 80.1% and 71.4%, respectively. Pharmacological studies reveal that EELN could inhibit the growth of Sarcoma 180 tumor and increase the indices of thymus and spleen to improve the immune system remarkably in vivo. Results indicated that the bromophenol derivatives and EELN can be used as potent antitumor agents for PTK over-expression of c-kit and considered in a new therapeutic strategy for treatment of cancer. Supported by the National High Technology Research and Development Program of China (863 Program, No. 2007AA09Z410) and Knowledge Innovation Program of Chinese Academy of Sciences (No. KZCX2-YW-209)     

<Emphasis Type="Italic">GST</Emphasis> (<Emphasis Type="Italic">phi</Emphasis>) gene from Macrophyte <Emphasis Type="Italic">Lemna minor</Emphasis> is involved in cadmium exposure responses

Reactive oxygen species (ROS) scavengers, including ascorbate peroxidase, superoxide dismutase, catalase and peroxidase, are the most commonly used biomarkers in assessing an organisms’ response to many biotic and abiotic stresses. In this study, we cloned an 866 bp GST (phi) gene in Lemna minor and investigated its characteristics, expression and enzymatic activities under 75 μmol/L cadmium concentrations in comparison with other ROS scavengers. GST (phi) gene expression patterns were similar to those of other scavengers of ROS. This suggests that GST (phi) might be involved in responding to heavy metal (cadmium) stress and that its expression level could be used as a bio-indicator in monitoring cadmium pollution.     

Synedra ulna var. repanda,a new variety of Synedra （Bacillariophyta） from Xinjiang,China

Synedra ulna var, repanda Q. X. Wang ＆ Q. M. You, a new variety of Synedra （Bacillariophyta） from Xinjiang, China, is described and illustrated, and the characteristic of the variety： includes undulate-linear valves and straight pseudoraphe, differs from other species of Synedra.     

Fatty acid composition of <Emphasis Type="Italic">Euphausia superba</Emphasis>, <Emphasis Type="Italic">Thysanoessa macrura</Emphasis> and <Emphasis Type="Italic">Euphausia crystallorophias</Emphasis> collected from Prydz Bay,Antarctica

The information of trophic relationship is important for studying the Southern Ocean ecosystems. In this study, three dominant krill species, Euphausia superba, Thysanoessa macrura and Euphausia crystallorophias, were collected from Prydz Bay, Antarctica, during austral summer of 2009/2010. The composition of fatty acids in these species was studied. E. superba and T. macrura showed a similar fatty acid composition which was dominated by C14:0, C16:0, EPA (eicosapentenoic acid) and DHA (decosahexenoic acid) while E. crystallorophias showed higher contents of C18:1(n-9), C18:1(n-7), DHA and EPA than the former two. Higher fatty acid ratios of C18:1(n-9)/18:1(n-7), PUFA (polyunsaturated fatty acid)/SFA (saturated fatty acid), and 18PUFA/16PUFA indicated that E. crystallorophias should be classified as a typical omnivore with a higher trophic position compared with E. superba and T. macrura.     

基于频度统计和神经网络的北太平洋柔鱼渔场预报模型比较

利用2004~2010年北太平洋鱿钓船队生产数据和海洋环境数据,以海表温度(SST)1℃、海面高度(SSH)为1 cm、叶绿素a浓度(CHL-a)为0.1 mg/m3的间距,分析作业产量、CPUE与SST、SSH、CHL-a的关系,得到柔鱼渔场适宜环境因子范围,并将生产数据和环境数据匹配组成样本集,建立北太平洋柔鱼空间分布BP神经网络模型;利用2011年环境数据预报柔鱼渔场,并与2011年实际生产数据进行对比。结果表明,6~10月各月实际作业位置落入基于频度统计方法预报渔场的概率达90%以上;而BP模型预报的平均精度为79.2%,最低精度为52.5%。基于多环境因子的频度统计柔鱼渔场预报模型优于神经网络模型。     

Species composition and gear characteristics of the <Emphasis Type="Italic">Macrobrachium</Emphasis> fishery of the Cross River Estuary,Nigeria

The Cross River Estuary, Nigeria, is an important shrimping area for artisanal fishermen of the coastal communities. The multi-species Macrobrachium fishery is exploited with three main gears, namely beach seine, push net and trap. Studies on species composition of this fishery recorded thirteen shrimp species, one swimming crab (Callinectes amnicola) and two fish species (Eleotris sp. and Pellonula leonensis). The shrimp species identified included Macrobrachium macrobrachion (83.39% and 55.69% by number and weight, respectively), M. vollenhovenii (9.66% and 37.18%), M. equidens (3.8% and 2.87%), juveniles-sub-adults of Penaeus notialis (1.11% and 1.3%), M. dux, M. felicinum, Palaemonetes africanus, Palaemon maculatus, Palaemon elegans, Desmocaris sp., Leander sp., Nematopalaemon hastatus and Alpheus pontederiae. While the selectivity index for trap was 0.25, beach seine and push net had a lower index of 0.063. The results present the first comprehensive and representative report for the Estuary shrimp fishery and will assist in the management of the biodiversity of this ecosystem.     

Biodegradation of <Emphasis Type="Italic">Enteromorpha</Emphasis> polysaccharides by intestinal micro-community from <Emphasis Type="Italic">Siganus oramin</Emphasis>

Micro-communities are supposed to have more potential functions of biodegradation of polysaccharides than single strain; however, the intestinal micro-communities involved in the biodegradation of Enteromorpha polysaccharides (EP) were seldom reported. In order to obtain the EP-degrading micro-community, the intestines of Siganus oramin was obtained to isolate the micro-communities, which were enriched by 0.3% of EP as the sole carbon source. A stable micro-community with EP degradative capability was achieved after seven generations of subculture, named H1. Results showed that H1 was able to degrade 75% of EP within 24 hours, and the activity of EP lyases reached 500 U mL^?1 in 32 hours. With denaturing gradient gel electrophoresis (DGGE) and 16S rRNA gene clone library analysis, ten bacteria closely related to Marinomonas pontica, Microbacterium sp., Leucobacter chironomi, Cyclobacterium sp., Algoriphagus winogradskyi, Pseudoalteromonas sp. and Vibrio sp. were determined. Furthermore, compared with the DGGE bands sequence and the clone library analysis, the dominant bacteria of the EP-biodegrading micro- community were Pseudoalteromonas sp. and Vibrio sp., with the respective proportion of 38% and 46%, and they should play an important role in EP degradation together with other degrading bacteria in the micro-community H1.     

Immune response of <Emphasis Type="Italic">Pseudosciaena crocea</Emphasis> to the injection of <Emphasis Type="Italic">Vibrio alginolyticus</Emphasis>

For the investigation of anti-infection immune response of Pseudosciaena crocea, 160 healthy fish samples were categorized into infected and control groups. Each individual fish in the infected group was injected intraperitoneally (i.p.) with 0.2 ml bacterial suspension of Vibrio alginolyticus in density of 2×10⁷ CFU/ml, while each individual in the control group was injected i.p. with 0.2 ml sterile saline solution (0.85%). It was observed that the artificial injection of V. alginolyticus significantly increased the number of erythrocytes, leucocytes, lymphocytes in peripheral blood as well as peripheral serum antibacterial activity and antibody titer of large yellow croaker, and significantly reduced the number of peripheral blood granulocytes as compared with those in the control group. No significant difference in acid phosphytase and superoxide dismutase activity of serum was detected between the two groups. It is suggested that non-specific immune factors including leucocytes and anti-bacteria substance in peripheral blood played important role at the initial stage of infection, and specific immune factors such as antibody then played important role in response to anti-infection at the latter stage. Supported by the National High Technology Research and Development Program of China (863 program, No. 2007AA09Z115) and Technology Program of Xiamen (No. 3502Z73019)     

Development and Characterization of Microsatellite Markers for the Pacific Abalone （Haliotis discus） via EST Database Mining

The EST database of the Pacific abalone (Haliotis discus) was mined for developing mierosatellite markers. A total of 1476 EST sequences were registered in GenBank when data mining was performed. Fifty sequences (approximately 3.4%) were found to contain one or more mierosatellites. Based on the length and GC content of the flanking regions, duster analysis and BLASTN, 13 microsatellite-containing ESTs were selected for PCR primer design. The results showed that 10 out of 13 primer pairs could amplify seorable PCR products and showed polymorphism. The number of alleles ranged from 2 to 13 and the values of Hoand He varied from 0.1222 to 0.8611 and 0.2449 to 0.9311, respectively. No significant linkage disequilibrium (LD) between any pairs of these loci was found, and 6 of 10 loci conformed to the Hardy-Weinberg equilibrium (HWE). These EST-SSRs are therefore potential tools for studies of intraspecies variation and hybrid identification.     

Bioaccumulation of Pb<Superscript>2+</Superscript> and its effects on growth,morphology and pigment contents of <Emphasis Type="Italic">Spirulina</Emphasis> (<Emphasis Type="Italic">Arthrospira</Emphasis>) <Emphasis Type="Italic">platensis</Emphasis>

A laboratory experiment was conducted to assess the bioaccumulation of Pb²⁺ and its effects on growth, morphology and pigment contents of Spirulina (Arthrospira) platensis. The specimen cultured in Zarrouk liquid medium was treated with various initial metal concentrations (0, 5, 10, 30, 50 and 100 μg mL⁻¹). The growth of S. platensis was adversely affected by Pb²⁺ at high concentrations (30, 50 and 100 μg mL⁻¹). However, at low concentrations (5 μg mL⁻¹), Pb²⁺ could stimulate its growth slightly. The pigment contents (chlorophyll α and β carotene) were decreased in a dose-dependent manner. The highest reductions (67% and 53% respectively in chlorophyll α and β carotene) were observed in 100 μg mL⁻¹ treatment group. The LC₅₀ (96 h) of Pb²⁺ was measured as 75.34 μg mL⁻¹. Apart from a few cases of filament breakages at elevated concentrations (50 and 100 μg mL⁻¹), morphological abnormalities are not specific. Metal bioaccumulation increased with Pb²⁺ concentrations, but decreased with exposure time. The maximum accumulated amount was 188 mg g⁻¹ dry weight. The bioconcentration factor (BCF) reached to a peak at day 2, followed by a gradual reduction for all the exposure concentrations. S. platensis is able to tolerate considerably high Pb²⁺ concentrations. Consequently it can be used as a potential species to remove heavy metal from contaminated waters.     

Genome size of <Emphasis Type="Italic">Alexandrium catenella</Emphasis> and <Emphasis Type="Italic">Gracilariopsis lemaneiformis</Emphasis> estimated by flow cytometry

Flow cytometry(FCM) technique has been widely applied to estimating the genome size of various higher plants. However, there is few report about its application in algae. In this study, an optimized procedure of FCM was exploited to estimate the genome size of two eukaryotic algae. For analyzing Alexandrium catenella, an important red tide species, the whole cell instead of isolated nucleus was studied, and chicken erythrocytes were used as an internal reference. The genome size of A. catenella was estimated to be 56.48 ± 4.14 Gb(1C), approximately nineteen times larger than that of human genome. For analyzing Gracilariopsis lemaneiformis, an important economical red alga, the purified nucleus was employed, and Arabidopsis thaliana and Chondrus crispus were used as internal references, respectively. The genome size of Gp. lemaneiformis was 97.35 ± 2.58 Mb(1C) and 112.73 ± 14.00 Mb(1C), respectively, depending on the different internal references. The results of this research will promote the related studies on the genomics and evolution of these two species.